Gchil2303.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2303.t1
Unique NameGchil2303.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length273
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:1509380..1510283 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2303Gchil2303Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 1509380..1510283 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2303.t1Gchil2303.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 1509380..1510283 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2303.t1.start1Gchil2303.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 1509380..1509382 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2303.t1.CDS1Gchil2303.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 1509380..1510093 +
Gchil2303.t1.CDS2Gchil2303.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 1510179..1510283 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2303.t1.exon1Gchil2303.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 1509380..1510093 +
Gchil2303.t1.exon2Gchil2303.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 1510179..1510283 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2303.t1.intron1Gchil2303.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 1510094..1510178 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2303.t1.stop1Gchil2303.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 1510281..1510283 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2303.t1 ID=Gchil2303.t1|Name=Gchil2303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=273bp
MGFFKRFFLLYFVLLLPSLTSFPVRLGPVQNIKELSYLTQKFHPKTSNRK
ISFRRVFDASSHTTSKKRIFKSLATRRFIPFVHDVSTVERLISNQNLPKV
VLRQGLNLEPCSSVSDCRGNRICVPLYSETGVPEPCDVEDFHCFCLSADA
SCNASSECDDGEVCFDLEESIVHLCISEQIAKNLNGSALNTEDPENVSSP
VENGIDVNDSVSVENGFEHNTSSVDGTGSVFDSGLNGDNPLIVSAFNLVV
LTVPQILIVMMEKFASTSRILY*
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spliced messenger RNA

>Gchil2303.t1 ID=Gchil2303.t1|Name=Gchil2303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=819bp|location=Sequence derived from alignment at tig00004419_pilon:1509380..1510283+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGGCTTCTTTAAAAGATTTTTTCTGCTCTATTTCGTCCTTCTTCTGCC
TTCACTCACATCCTTCCCGGTTCGACTTGGTCCAGTTCAGAACATCAAAG
AACTGTCCTACTTGACGCAGAAGTTCCACCCGAAGACTTCCAATCGCAAA
ATTTCATTTAGGCGAGTCTTTGATGCTTCGTCTCATACCACTTCCAAAAA
GAGGATTTTCAAGAGTCTTGCAACAAGGCGTTTCATCCCGTTCGTACATG
ATGTTTCAACCGTTGAACGCCTCATCTCCAACCAAAATCTTCCGAAAGTT
GTCCTTCGCCAAGGCCTCAACCTCGAACCATGTTCATCGGTGTCAGACTG
TCGAGGGAATCGTATCTGCGTACCTCTATATTCAGAAACTGGTGTACCAG
AACCTTGCGACGTTGAAGATTTCCATTGCTTTTGTCTGAGTGCTGATGCA
TCTTGTAATGCATCCTCCGAATGTGATGACGGCGAAGTCTGCTTTGATTT
GGAAGAAAGTATAGTGCATCTATGTATATCAGAGCAGATTGCAAAAAATT
TGAATGGGTCAGCTCTCAATACAGAAGATCCCGAAAACGTTTCCAGTCCA
GTTGAGAACGGTATTGATGTTAATGATTCAGTGTCGGTTGAGAATGGTTT
CGAACACAATACTTCTTCCGTAGATGGAACTGGTTCTGTCTTCGATTCTG
GACTAAATGGTGATAATCCTCTGATTGTTTCTGCTTTCAACCTAGTGGTG
CTGACTGTGCCACAGATTCTGATTGTGATGATGGAGAAGTTTGCTTCGAC
GAGCCGGATACTGTACTAA
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protein sequence of Gchil2303.t1

>Gchil2303.t1 ID=Gchil2303.t1|Name=Gchil2303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=273bp
MGFFKRFFLLYFVLLLPSLTSFPVRLGPVQNIKELSYLTQKFHPKTSNRK
ISFRRVFDASSHTTSKKRIFKSLATRRFIPFVHDVSTVERLISNQNLPKV
VLRQGLNLEPCSSVSDCRGNRICVPLYSETGVPEPCDVEDFHCFCLSADA
SCNASSECDDGEVCFDLEESIVHLCISEQIAKNLNGSALNTEDPENVSSP
VENGIDVNDSVSVENGFEHNTSSVDGTGSVFDSGLNGDNPLIVSAFNLVV
LTVPQILIVMMEKFASTSRILY*
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mRNA from alignment at tig00004419_pilon:1509380..1510283+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2303.t1 ID=Gchil2303.t1|Name=Gchil2303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=904bp|location=Sequence derived from alignment at tig00004419_pilon:1509380..1510283+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCTTCTTTAAAAGATTTTTTCTGCTCTATTTCGTCCTTCTTCTGCC
TTCACTCACATCCTTCCCGGTTCGACTTGGTCCAGTTCAGAACATCAAAG
AACTGTCCTACTTGACGCAGAAGTTCCACCCGAAGACTTCCAATCGCAAA
ATTTCATTTAGGCGAGTCTTTGATGCTTCGTCTCATACCACTTCCAAAAA
GAGGATTTTCAAGAGTCTTGCAACAAGGCGTTTCATCCCGTTCGTACATG
ATGTTTCAACCGTTGAACGCCTCATCTCCAACCAAAATCTTCCGAAAGTT
GTCCTTCGCCAAGGCCTCAACCTCGAACCATGTTCATCGGTGTCAGACTG
TCGAGGGAATCGTATCTGCGTACCTCTATATTCAGAAACTGGTGTACCAG
AACCTTGCGACGTTGAAGATTTCCATTGCTTTTGTCTGAGTGCTGATGCA
TCTTGTAATGCATCCTCCGAATGTGATGACGGCGAAGTCTGCTTTGATTT
GGAAGAAAGTATAGTGCATCTATGTATATCAGAGCAGATTGCAAAAAATT
TGAATGGGTCAGCTCTCAATACAGAAGATCCCGAAAACGTTTCCAGTCCA
GTTGAGAACGGTATTGATGTTAATGATTCAGTGTCGGTTGAGAATGGTTT
CGAACACAATACTTCTTCCGTAGATGGAACTGGTTCTGTCTTCGATTCTG
GACTAAATGGTGATGTATGTTCCTCAGAATCCGATTGTGAAGGTGATCGC
CTGTGTTTTCTTACATCAGCTAGTTTGTTTCCTGAATTCTGCCCATCAGA
ATCCTCTGATTGTTTCTGCTTTCAACCTAGTGGTGCTGACTGTGCCACAG
ATTCTGATTGTGATGATGGAGAAGTTTGCTTCGACGAGCCGGATACTGTA
CTAA
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Coding sequence (CDS) from alignment at tig00004419_pilon:1509380..1510283+

>Gchil2303.t1 ID=Gchil2303.t1|Name=Gchil2303.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=819bp|location=Sequence derived from alignment at tig00004419_pilon:1509380..1510283+ (Gracilaria chilensis NLEC103_M9 male)
ATGGGCTTCTTTAAAAGATTTTTTCTGCTCTATTTCGTCCTTCTTCTGCC
TTCACTCACATCCTTCCCGGTTCGACTTGGTCCAGTTCAGAACATCAAAG
AACTGTCCTACTTGACGCAGAAGTTCCACCCGAAGACTTCCAATCGCAAA
ATTTCATTTAGGCGAGTCTTTGATGCTTCGTCTCATACCACTTCCAAAAA
GAGGATTTTCAAGAGTCTTGCAACAAGGCGTTTCATCCCGTTCGTACATG
ATGTTTCAACCGTTGAACGCCTCATCTCCAACCAAAATCTTCCGAAAGTT
GTCCTTCGCCAAGGCCTCAACCTCGAACCATGTTCATCGGTGTCAGACTG
TCGAGGGAATCGTATCTGCGTACCTCTATATTCAGAAACTGGTGTACCAG
AACCTTGCGACGTTGAAGATTTCCATTGCTTTTGTCTGAGTGCTGATGCA
TCTTGTAATGCATCCTCCGAATGTGATGACGGCGAAGTCTGCTTTGATTT
GGAAGAAAGTATAGTGCATCTATGTATATCAGAGCAGATTGCAAAAAATT
TGAATGGGTCAGCTCTCAATACAGAAGATCCCGAAAACGTTTCCAGTCCA
GTTGAGAACGGTATTGATGTTAATGATTCAGTGTCGGTTGAGAATGGTTT
CGAACACAATACTTCTTCCGTAGATGGAACTGGTTCTGTCTTCGATTCTG
GACTAAATGGTGATAATCCTCTGATTGTTTCTGCTTTCAACCTAGTGGTG
CTGACTGTGCCACAGATTCTGATTGTGATGATGGAGAAGTTTGCTTCGAC
GAGCCGGATACTGTACTAA
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