Gchil2296.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2296.t1
Unique NameGchil2296.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length452
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:1249876..1251231 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog267747.PPA1039
Preferred namehemG
PFAMsAmino_oxidase,Methyltransf_11,NAD_binding_8
Max annot lvl2|Bacteria
KEGG rclassRC00885
KEGG koko:K00231
KEGG ReactionR03222,R04178
KEGG Pathwayko00860,ko01100,ko01110,map00860,map01100,map01110
KEGG ModuleM00121
Evalue2.84e-24
EggNOG OGsCOG1232@1|root,COG1232@2|Bacteria
EC1.3.3.15,1.3.3.4
Descriptionprotoporphyrinogen oxidase activity
COG categoryH
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2296Gchil2296Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 1249876..1251231 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2296.t1.start1Gchil2296.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 1249876..1249878 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2296.t1.CDS1Gchil2296.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 1249876..1251231 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2296.t1.exon1Gchil2296.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 1249876..1251231 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2296.t1.stop1Gchil2296.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 1251229..1251231 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2296.t1Gchil2296.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 1249876..1251231 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2296.t1 ID=Gchil2296.t1|Name=Gchil2296.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=452bp
MEPAFPLDTSIAIIGGGPSGLAAAWFLVKLGYKNITVLEKEQQVGGKCLT
VNHTSSAGERKNYELGAEYITFSYDILYSFLEELDEPIVEAGPIMAMAGS
GKFEPPLKIDNPETILALLRYFHLAFTYRAEIESPTNENFAGHPVLSLSS
KTLIEKYGLEPIEGILLVQQFGYGTFENFPALHLFRTVSYDLLLRIVAEE
LHIPICNRPVAALAVNGTQGLFKHMANWIDSQKKTVYPDSPAVLTGSNVT
KVVPTENKVEVHTSSTKITVDKVICSVPPDLLAGMMDLSQEWNSLFTKIM
YHPYWVGCLEFCDRKLPQYYYQNEEPKAFEPVQFSKRYEEGQIIAYGYNY
NYARDAAKEDRPEIDSVLAAFLKDNLLIDRYDTLDLEKYWDSYHPHVSLE
EFQSGYFDKLARFQGTNGIYLTGDTLCMESMECSCRHAKYIVENFFGTKT
T*
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spliced messenger RNA

>Gchil2296.t1 ID=Gchil2296.t1|Name=Gchil2296.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00004419_pilon:1249876..1251231+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCCCGCTTTCCCCCTCGATACCAGCATTGCCATAATTGGGGGAGG
TCCATCCGGTCTGGCAGCAGCTTGGTTTCTCGTTAAACTGGGATACAAGA
ACATCACCGTTTTGGAGAAAGAACAGCAGGTGGGTGGGAAGTGCTTAACT
GTTAACCACACCAGTTCTGCCGGAGAACGAAAGAACTATGAGCTAGGAGC
TGAGTACATTACCTTCTCCTACGACATCTTGTACAGCTTTTTGGAAGAGT
TGGATGAACCAATCGTCGAGGCAGGTCCCATCATGGCAATGGCTGGCAGT
GGAAAATTTGAACCTCCTCTCAAGATCGATAACCCTGAAACCATACTTGC
CCTTCTCAGGTACTTCCACCTTGCATTTACGTACAGGGCAGAAATAGAAA
GCCCTACGAACGAAAACTTCGCTGGGCATCCAGTTCTCAGCTTAAGCTCC
AAAACGCTCATCGAAAAATACGGTCTGGAGCCCATTGAAGGCATTCTATT
GGTGCAACAGTTTGGCTACGGTACATTCGAGAACTTCCCAGCTCTTCATC
TTTTCCGCACTGTGTCATATGACCTTCTTCTTCGCATTGTGGCTGAAGAG
CTTCACATACCGATTTGTAATAGACCTGTGGCAGCCCTGGCCGTAAATGG
AACGCAAGGGCTGTTCAAGCACATGGCAAACTGGATTGATTCGCAAAAAA
AAACAGTTTATCCGGATTCACCAGCTGTTTTGACTGGATCCAACGTTACC
AAAGTTGTACCTACTGAAAACAAGGTGGAAGTACACACAAGTTCCACCAA
AATCACTGTTGACAAGGTTATCTGCTCTGTACCTCCAGATCTTTTAGCCG
GGATGATGGATTTATCTCAAGAATGGAATTCATTGTTTACGAAAATCATG
TACCATCCATACTGGGTAGGTTGTTTAGAATTCTGCGATAGAAAGCTTCC
CCAATACTACTACCAGAATGAAGAGCCGAAGGCGTTCGAACCAGTGCAAT
TCAGCAAAAGGTACGAAGAAGGTCAAATCATAGCTTACGGCTACAATTAT
AACTATGCCAGAGATGCAGCTAAGGAAGACAGGCCAGAAATAGACTCAGT
GTTGGCAGCATTTCTCAAGGACAATTTGCTCATCGACCGCTACGATACCC
TCGATCTGGAAAAGTATTGGGATTCATATCATCCGCACGTTTCCTTGGAA
GAATTCCAAAGCGGATATTTTGACAAGTTGGCAAGGTTTCAGGGCACGAA
TGGGATTTATCTTACTGGAGACACATTGTGCATGGAAAGCATGGAGTGCA
GCTGCAGGCATGCTAAATATATAGTCGAAAACTTCTTTGGTACCAAAACC
ACCTAA
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protein sequence of Gchil2296.t1

>Gchil2296.t1 ID=Gchil2296.t1|Name=Gchil2296.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=452bp
MEPAFPLDTSIAIIGGGPSGLAAAWFLVKLGYKNITVLEKEQQVGGKCLT
VNHTSSAGERKNYELGAEYITFSYDILYSFLEELDEPIVEAGPIMAMAGS
GKFEPPLKIDNPETILALLRYFHLAFTYRAEIESPTNENFAGHPVLSLSS
KTLIEKYGLEPIEGILLVQQFGYGTFENFPALHLFRTVSYDLLLRIVAEE
LHIPICNRPVAALAVNGTQGLFKHMANWIDSQKKTVYPDSPAVLTGSNVT
KVVPTENKVEVHTSSTKITVDKVICSVPPDLLAGMMDLSQEWNSLFTKIM
YHPYWVGCLEFCDRKLPQYYYQNEEPKAFEPVQFSKRYEEGQIIAYGYNY
NYARDAAKEDRPEIDSVLAAFLKDNLLIDRYDTLDLEKYWDSYHPHVSLE
EFQSGYFDKLARFQGTNGIYLTGDTLCMESMECSCRHAKYIVENFFGTKT
T*
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mRNA from alignment at tig00004419_pilon:1249876..1251231+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2296.t1 ID=Gchil2296.t1|Name=Gchil2296.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1356bp|location=Sequence derived from alignment at tig00004419_pilon:1249876..1251231+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCCCGCTTTCCCCCTCGATACCAGCATTGCCATAATTGGGGGAGG
TCCATCCGGTCTGGCAGCAGCTTGGTTTCTCGTTAAACTGGGATACAAGA
ACATCACCGTTTTGGAGAAAGAACAGCAGGTGGGTGGGAAGTGCTTAACT
GTTAACCACACCAGTTCTGCCGGAGAACGAAAGAACTATGAGCTAGGAGC
TGAGTACATTACCTTCTCCTACGACATCTTGTACAGCTTTTTGGAAGAGT
TGGATGAACCAATCGTCGAGGCAGGTCCCATCATGGCAATGGCTGGCAGT
GGAAAATTTGAACCTCCTCTCAAGATCGATAACCCTGAAACCATACTTGC
CCTTCTCAGGTACTTCCACCTTGCATTTACGTACAGGGCAGAAATAGAAA
GCCCTACGAACGAAAACTTCGCTGGGCATCCAGTTCTCAGCTTAAGCTCC
AAAACGCTCATCGAAAAATACGGTCTGGAGCCCATTGAAGGCATTCTATT
GGTGCAACAGTTTGGCTACGGTACATTCGAGAACTTCCCAGCTCTTCATC
TTTTCCGCACTGTGTCATATGACCTTCTTCTTCGCATTGTGGCTGAAGAG
CTTCACATACCGATTTGTAATAGACCTGTGGCAGCCCTGGCCGTAAATGG
AACGCAAGGGCTGTTCAAGCACATGGCAAACTGGATTGATTCGCAAAAAA
AAACAGTTTATCCGGATTCACCAGCTGTTTTGACTGGATCCAACGTTACC
AAAGTTGTACCTACTGAAAACAAGGTGGAAGTACACACAAGTTCCACCAA
AATCACTGTTGACAAGGTTATCTGCTCTGTACCTCCAGATCTTTTAGCCG
GGATGATGGATTTATCTCAAGAATGGAATTCATTGTTTACGAAAATCATG
TACCATCCATACTGGGTAGGTTGTTTAGAATTCTGCGATAGAAAGCTTCC
CCAATACTACTACCAGAATGAAGAGCCGAAGGCGTTCGAACCAGTGCAAT
TCAGCAAAAGGTACGAAGAAGGTCAAATCATAGCTTACGGCTACAATTAT
AACTATGCCAGAGATGCAGCTAAGGAAGACAGGCCAGAAATAGACTCAGT
GTTGGCAGCATTTCTCAAGGACAATTTGCTCATCGACCGCTACGATACCC
TCGATCTGGAAAAGTATTGGGATTCATATCATCCGCACGTTTCCTTGGAA
GAATTCCAAAGCGGATATTTTGACAAGTTGGCAAGGTTTCAGGGCACGAA
TGGGATTTATCTTACTGGAGACACATTGTGCATGGAAAGCATGGAGTGCA
GCTGCAGGCATGCTAAATATATAGTCGAAAACTTCTTTGGTACCAAAACC
ACCTAA
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Coding sequence (CDS) from alignment at tig00004419_pilon:1249876..1251231+

>Gchil2296.t1 ID=Gchil2296.t1|Name=Gchil2296.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1356bp|location=Sequence derived from alignment at tig00004419_pilon:1249876..1251231+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCCCGCTTTCCCCCTCGATACCAGCATTGCCATAATTGGGGGAGG
TCCATCCGGTCTGGCAGCAGCTTGGTTTCTCGTTAAACTGGGATACAAGA
ACATCACCGTTTTGGAGAAAGAACAGCAGGTGGGTGGGAAGTGCTTAACT
GTTAACCACACCAGTTCTGCCGGAGAACGAAAGAACTATGAGCTAGGAGC
TGAGTACATTACCTTCTCCTACGACATCTTGTACAGCTTTTTGGAAGAGT
TGGATGAACCAATCGTCGAGGCAGGTCCCATCATGGCAATGGCTGGCAGT
GGAAAATTTGAACCTCCTCTCAAGATCGATAACCCTGAAACCATACTTGC
CCTTCTCAGGTACTTCCACCTTGCATTTACGTACAGGGCAGAAATAGAAA
GCCCTACGAACGAAAACTTCGCTGGGCATCCAGTTCTCAGCTTAAGCTCC
AAAACGCTCATCGAAAAATACGGTCTGGAGCCCATTGAAGGCATTCTATT
GGTGCAACAGTTTGGCTACGGTACATTCGAGAACTTCCCAGCTCTTCATC
TTTTCCGCACTGTGTCATATGACCTTCTTCTTCGCATTGTGGCTGAAGAG
CTTCACATACCGATTTGTAATAGACCTGTGGCAGCCCTGGCCGTAAATGG
AACGCAAGGGCTGTTCAAGCACATGGCAAACTGGATTGATTCGCAAAAAA
AAACAGTTTATCCGGATTCACCAGCTGTTTTGACTGGATCCAACGTTACC
AAAGTTGTACCTACTGAAAACAAGGTGGAAGTACACACAAGTTCCACCAA
AATCACTGTTGACAAGGTTATCTGCTCTGTACCTCCAGATCTTTTAGCCG
GGATGATGGATTTATCTCAAGAATGGAATTCATTGTTTACGAAAATCATG
TACCATCCATACTGGGTAGGTTGTTTAGAATTCTGCGATAGAAAGCTTCC
CCAATACTACTACCAGAATGAAGAGCCGAAGGCGTTCGAACCAGTGCAAT
TCAGCAAAAGGTACGAAGAAGGTCAAATCATAGCTTACGGCTACAATTAT
AACTATGCCAGAGATGCAGCTAAGGAAGACAGGCCAGAAATAGACTCAGT
GTTGGCAGCATTTCTCAAGGACAATTTGCTCATCGACCGCTACGATACCC
TCGATCTGGAAAAGTATTGGGATTCATATCATCCGCACGTTTCCTTGGAA
GAATTCCAAAGCGGATATTTTGACAAGTTGGCAAGGTTTCAGGGCACGAA
TGGGATTTATCTTACTGGAGACACATTGTGCATGGAAAGCATGGAGTGCA
GCTGCAGGCATGCTAAATATATAGTCGAAAACTTCTTTGGTACCAAAACC
ACCTAA
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