Gchil2293.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2293.t1
Unique NameGchil2293.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length170
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:1134753..1135427 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1408424.JHYI01000021_gene42
PFAMsCBM_4_9,CBM_6,Cadherin-like,F5_F8_type_C,FIVAR,Glyco_hydro_16,Gram_pos_anchor,SLH
Max annot lvl91061|Bacilli
Evalue3.92e-26
EggNOG OGsCOG2273@1|root,COG2273@2|Bacteria,1TR5U@1239|Firmicutes,4HB9D@91061|Bacilli,1ZFAG@1386|Bacillus
DescriptionGlycoside hydrolase family 16
COG categoryG
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2293Gchil2293Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 1134753..1135427 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2293.t1Gchil2293.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 1134753..1135427 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2293.t1.stop1Gchil2293.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 1134753..1134755 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2293.t1.CDS1Gchil2293.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 1134753..1135027 -
Gchil2293.t1.CDS2Gchil2293.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 1135110..1135196 -
Gchil2293.t1.CDS3Gchil2293.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 1135280..1135427 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2293.t1.exon1Gchil2293.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 1134753..1135027 -
Gchil2293.t1.exon2Gchil2293.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 1135110..1135196 -
Gchil2293.t1.exon3Gchil2293.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 1135280..1135427 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2293.t1.intron1Gchil2293.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 1135028..1135109 -
Gchil2293.t1.intron2Gchil2293.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 1135197..1135279 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2293.t1.start1Gchil2293.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 1135425..1135427 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2293.t1 ID=Gchil2293.t1|Name=Gchil2293.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=170bp
MKPIGVSGIITSLFTYTAPTDGVGGSTPKHNEIDIEFEGSDPMRVQLNYF
TDDEDPPLQKNEHHHYLGFDASKSFNVYGFRWAPWGIEWQVNGQSVRYVD
NSNDNTTPKVTSQNLQKILANAWVVAKDMENNFGGYFDAQSFTEASAEYK
WIRYTKLDQYARCSIPSSC*
back to top

spliced messenger RNA

>Gchil2293.t1 ID=Gchil2293.t1|Name=Gchil2293.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=510bp|location=Sequence derived from alignment at tig00004419_pilon:1134753..1135427- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAACCAATAGGTGTTTCGGGTATAATCACATCACTGTTTACATATAC
AGCACCCACCGATGGAGTTGGAGGATCTACACCAAAACATAATGAAATTG
ATATCGAGTTTGAAGGAAGTGATCCCATGAGGGTACAGCTGAATTATTTT
ACCGATGATGAAGATCCTCCGCTACAAAAAAACGAACACCATCATTATTT
GGGCTTCGATGCGTCAAAGAGTTTCAACGTTTATGGATTCCGGTGGGCTC
CATGGGGCATTGAGTGGCAAGTGAACGGGCAATCTGTGAGATACGTCGAC
AATAGCAATGACAATACAACGCCCAAAGTCACTTCACAAAATCTGCAAAA
AATTCTGGCAAATGCCTGGGTGGTAGCCAAAGATATGGAGAACAATTTCG
GGGGTTACTTTGATGCGCAGAGTTTTACGGAGGCTTCGGCAGAGTACAAA
TGGATCCGTTACACAAAGCTGGACCAGTATGCACGCTGTTCCATTCCAAG
CTCTTGCTAG
back to top

protein sequence of Gchil2293.t1

>Gchil2293.t1 ID=Gchil2293.t1|Name=Gchil2293.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=170bp
MKPIGVSGIITSLFTYTAPTDGVGGSTPKHNEIDIEFEGSDPMRVQLNYF
TDDEDPPLQKNEHHHYLGFDASKSFNVYGFRWAPWGIEWQVNGQSVRYVD
NSNDNTTPKVTSQNLQKILANAWVVAKDMENNFGGYFDAQSFTEASAEYK
WIRYTKLDQYARCSIPSSC*
back to top

mRNA from alignment at tig00004419_pilon:1134753..1135427-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2293.t1 ID=Gchil2293.t1|Name=Gchil2293.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=675bp|location=Sequence derived from alignment at tig00004419_pilon:1134753..1135427- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACCAATAGGTGTTTCGGGTATAATCACATCACTGTTTACATATAC
AGCACCCACCGATGGAGTTGGAGGATCTACACCAAAACATAATGAAATTG
ATATCGAGTTTGAAGGAAGTGATCCCATGAGGGTACAGCTGAATTATTGT
AAGTGAGATGATCGCATTTTTTCGAGGTTTTCGAAAGACTTCAGCAAAGA
CTCACACAATTTTGTTTCAATGTTTTTTAAGTTACCGATGATGAAGATCC
TCCGCTACAAAAAAACGAACACCATCATTATTTGGGCTTCGATGCGTCAA
AGAGTTTCAACGTTTATGGTAAGTGCGCAACCATTTGACCTTTATCTCAG
TCAAGAACTTTTTTTGGCGAAACTAACAATACATGTCGAATCGGGAACAG
GATTCCGGTGGGCTCCATGGGGCATTGAGTGGCAAGTGAACGGGCAATCT
GTGAGATACGTCGACAATAGCAATGACAATACAACGCCCAAAGTCACTTC
ACAAAATCTGCAAAAAATTCTGGCAAATGCCTGGGTGGTAGCCAAAGATA
TGGAGAACAATTTCGGGGGTTACTTTGATGCGCAGAGTTTTACGGAGGCT
TCGGCAGAGTACAAATGGATCCGTTACACAAAGCTGGACCAGTATGCACG
CTGTTCCATTCCAAGCTCTTGCTAG
back to top

Coding sequence (CDS) from alignment at tig00004419_pilon:1134753..1135427-

>Gchil2293.t1 ID=Gchil2293.t1|Name=Gchil2293.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=510bp|location=Sequence derived from alignment at tig00004419_pilon:1134753..1135427- (Gracilaria chilensis NLEC103_M9 male)
ATGAAACCAATAGGTGTTTCGGGTATAATCACATCACTGTTTACATATAC
AGCACCCACCGATGGAGTTGGAGGATCTACACCAAAACATAATGAAATTG
ATATCGAGTTTGAAGGAAGTGATCCCATGAGGGTACAGCTGAATTATTTT
ACCGATGATGAAGATCCTCCGCTACAAAAAAACGAACACCATCATTATTT
GGGCTTCGATGCGTCAAAGAGTTTCAACGTTTATGGATTCCGGTGGGCTC
CATGGGGCATTGAGTGGCAAGTGAACGGGCAATCTGTGAGATACGTCGAC
AATAGCAATGACAATACAACGCCCAAAGTCACTTCACAAAATCTGCAAAA
AATTCTGGCAAATGCCTGGGTGGTAGCCAAAGATATGGAGAACAATTTCG
GGGGTTACTTTGATGCGCAGAGTTTTACGGAGGCTTCGGCAGAGTACAAA
TGGATCCGTTACACAAAGCTGGACCAGTATGCACGCTGTTCCATTCCAAG
CTCTTGCTAG
back to top