Gchil2290.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2290.t1
Unique NameGchil2290.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length524
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:975236..976807 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1125971.ASJB01000076_gene6959
PFAMsCalx-beta,HYR,VWA
Max annot lvl201174|Actinobacteria
Evalue1.11e-25
EggNOG OGsCOG2304@1|root,COG2304@2|Bacteria,2IDJM@201174|Actinobacteria,4E2D1@85010|Pseudonocardiales
DescriptionCalx-beta domain
COG categoryV
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2290Gchil2290Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 975236..976807 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2290.t1.stop1Gchil2290.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 975236..975238 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2290.t1.CDS1Gchil2290.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 975236..976807 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2290.t1.exon1Gchil2290.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 975236..976807 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2290.t1.start1Gchil2290.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 976805..976807 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2290.t1Gchil2290.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 975236..976807 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2290.t1 ID=Gchil2290.t1|Name=Gchil2290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=524bp
MDHIYNAIPSGYVPAVATDPTFVHPRGARISRRVRIALVVVVTTLMFVML
TSGRNDISYYAHRLQYASRLHRPRHYFTPSQPVYVERQSSFPGLFQGVDE
QPITQVHPGHHVQRSPYYGPTPQHKQWQSSNRRPHLGRSVAHTADPSVCE
EKTSSSVFTFGKCPSECTPFSAGLFGECAGLVQFGCSLEMCASGFTCNLR
KDLTDEFVVCPGDKVVFENVTIDSLQEVSFKLDLRAPPLKTDMYMLSDGT
GSMSVAISTAKERALEIMNVFGSRPNVRFGVGMFRDENDPNYGFTNQQSI
TDNKDLVTAAINAQSAVGGGDVDEANLVALYKIATDPSIGWREGSRRILL
YFGDYPGHEPTCISGGTRLDRNSVIDALNSAFITTIAINFGKMDIVPSRY
GCSSGSAGSGQTTAITTSTNGSVLTETDQSKLVEGIETLIEGLPRILDVD
GSECAAQMTFTHTPALPTIFTSDAVTTVTNTFSVKSSICETKGAFDCNFR
YTESGGDLDAANLEFVNIQGCPE*
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spliced messenger RNA

>Gchil2290.t1 ID=Gchil2290.t1|Name=Gchil2290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00004419_pilon:975236..976807- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCACATCTACAATGCCATCCCTTCAGGCTATGTTCCTGCGGTCGC
TACCGATCCCACCTTTGTACACCCCCGCGGAGCTCGCATATCTCGTCGTG
TCCGTATCGCCCTTGTTGTGGTTGTTACCACTCTAATGTTTGTTATGCTC
ACGTCTGGCCGAAATGACATTTCTTACTATGCCCATCGTCTGCAGTATGC
TTCTCGGCTCCATCGCCCACGCCATTATTTCACTCCGAGTCAGCCTGTGT
ATGTAGAAAGACAGTCTTCCTTCCCAGGCCTCTTTCAGGGCGTCGACGAG
CAACCAATTACTCAAGTACATCCTGGCCATCACGTGCAGCGCAGCCCCTA
CTACGGCCCAACTCCACAACATAAGCAGTGGCAATCTTCAAACCGCAGAC
CACATCTTGGAAGAAGCGTCGCACACACCGCCGATCCATCCGTCTGCGAA
GAAAAGACCTCCAGCTCCGTGTTTACCTTCGGTAAATGTCCTTCTGAGTG
CACACCATTTTCCGCTGGCCTTTTCGGAGAATGTGCCGGTCTGGTTCAAT
TTGGCTGTTCCTTGGAGATGTGTGCTTCTGGTTTCACGTGCAATCTTCGA
AAAGACTTGACCGACGAATTCGTGGTATGTCCTGGAGACAAGGTTGTCTT
TGAGAATGTCACCATTGACAGTCTCCAAGAGGTATCCTTTAAGCTCGATT
TGAGAGCCCCTCCTCTTAAGACCGATATGTACATGCTCAGTGATGGCACC
GGATCCATGTCAGTGGCCATCAGTACTGCTAAAGAAAGGGCGCTAGAGAT
CATGAACGTTTTTGGGTCCCGTCCTAACGTCAGATTCGGCGTGGGCATGT
TCCGAGACGAAAACGACCCTAACTACGGCTTCACCAACCAGCAATCTATA
ACGGACAACAAGGATCTGGTAACAGCAGCTATCAACGCCCAAAGTGCTGT
TGGTGGAGGCGATGTAGACGAGGCCAATCTAGTGGCCTTGTACAAAATTG
CTACGGACCCAAGTATCGGATGGAGAGAAGGTTCGCGCCGAATCCTGCTA
TATTTTGGAGATTATCCCGGTCATGAGCCTACGTGTATTTCTGGCGGCAC
TCGGCTGGATCGAAACTCGGTCATCGACGCTTTGAACAGCGCTTTCATCA
CCACAATTGCCATCAATTTCGGAAAAATGGATATCGTTCCGTCGCGATAT
GGCTGCAGTAGTGGCTCTGCCGGCTCAGGCCAGACAACAGCCATCACAAC
ATCTACGAATGGATCAGTACTCACCGAGACCGACCAGTCCAAACTGGTAG
AGGGCATTGAAACTTTAATTGAGGGCTTGCCACGTATTCTCGACGTTGAT
GGCTCAGAATGCGCTGCCCAAATGACATTTACGCATACCCCTGCTCTGCC
AACCATATTCACTTCAGACGCTGTAACGACTGTGACCAACACTTTTTCCG
TGAAGAGCAGCATTTGTGAAACGAAAGGGGCTTTTGATTGCAACTTCAGG
TACACTGAGAGTGGCGGAGATCTTGATGCGGCCAATTTAGAGTTCGTCAA
CATTCAGGGTTGCCCTGAGTAG
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protein sequence of Gchil2290.t1

>Gchil2290.t1 ID=Gchil2290.t1|Name=Gchil2290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=524bp
MDHIYNAIPSGYVPAVATDPTFVHPRGARISRRVRIALVVVVTTLMFVML
TSGRNDISYYAHRLQYASRLHRPRHYFTPSQPVYVERQSSFPGLFQGVDE
QPITQVHPGHHVQRSPYYGPTPQHKQWQSSNRRPHLGRSVAHTADPSVCE
EKTSSSVFTFGKCPSECTPFSAGLFGECAGLVQFGCSLEMCASGFTCNLR
KDLTDEFVVCPGDKVVFENVTIDSLQEVSFKLDLRAPPLKTDMYMLSDGT
GSMSVAISTAKERALEIMNVFGSRPNVRFGVGMFRDENDPNYGFTNQQSI
TDNKDLVTAAINAQSAVGGGDVDEANLVALYKIATDPSIGWREGSRRILL
YFGDYPGHEPTCISGGTRLDRNSVIDALNSAFITTIAINFGKMDIVPSRY
GCSSGSAGSGQTTAITTSTNGSVLTETDQSKLVEGIETLIEGLPRILDVD
GSECAAQMTFTHTPALPTIFTSDAVTTVTNTFSVKSSICETKGAFDCNFR
YTESGGDLDAANLEFVNIQGCPE*
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mRNA from alignment at tig00004419_pilon:975236..976807-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2290.t1 ID=Gchil2290.t1|Name=Gchil2290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1572bp|location=Sequence derived from alignment at tig00004419_pilon:975236..976807- (Gracilaria chilensis NLEC103_M9 male)
ATGGATCACATCTACAATGCCATCCCTTCAGGCTATGTTCCTGCGGTCGC
TACCGATCCCACCTTTGTACACCCCCGCGGAGCTCGCATATCTCGTCGTG
TCCGTATCGCCCTTGTTGTGGTTGTTACCACTCTAATGTTTGTTATGCTC
ACGTCTGGCCGAAATGACATTTCTTACTATGCCCATCGTCTGCAGTATGC
TTCTCGGCTCCATCGCCCACGCCATTATTTCACTCCGAGTCAGCCTGTGT
ATGTAGAAAGACAGTCTTCCTTCCCAGGCCTCTTTCAGGGCGTCGACGAG
CAACCAATTACTCAAGTACATCCTGGCCATCACGTGCAGCGCAGCCCCTA
CTACGGCCCAACTCCACAACATAAGCAGTGGCAATCTTCAAACCGCAGAC
CACATCTTGGAAGAAGCGTCGCACACACCGCCGATCCATCCGTCTGCGAA
GAAAAGACCTCCAGCTCCGTGTTTACCTTCGGTAAATGTCCTTCTGAGTG
CACACCATTTTCCGCTGGCCTTTTCGGAGAATGTGCCGGTCTGGTTCAAT
TTGGCTGTTCCTTGGAGATGTGTGCTTCTGGTTTCACGTGCAATCTTCGA
AAAGACTTGACCGACGAATTCGTGGTATGTCCTGGAGACAAGGTTGTCTT
TGAGAATGTCACCATTGACAGTCTCCAAGAGGTATCCTTTAAGCTCGATT
TGAGAGCCCCTCCTCTTAAGACCGATATGTACATGCTCAGTGATGGCACC
GGATCCATGTCAGTGGCCATCAGTACTGCTAAAGAAAGGGCGCTAGAGAT
CATGAACGTTTTTGGGTCCCGTCCTAACGTCAGATTCGGCGTGGGCATGT
TCCGAGACGAAAACGACCCTAACTACGGCTTCACCAACCAGCAATCTATA
ACGGACAACAAGGATCTGGTAACAGCAGCTATCAACGCCCAAAGTGCTGT
TGGTGGAGGCGATGTAGACGAGGCCAATCTAGTGGCCTTGTACAAAATTG
CTACGGACCCAAGTATCGGATGGAGAGAAGGTTCGCGCCGAATCCTGCTA
TATTTTGGAGATTATCCCGGTCATGAGCCTACGTGTATTTCTGGCGGCAC
TCGGCTGGATCGAAACTCGGTCATCGACGCTTTGAACAGCGCTTTCATCA
CCACAATTGCCATCAATTTCGGAAAAATGGATATCGTTCCGTCGCGATAT
GGCTGCAGTAGTGGCTCTGCCGGCTCAGGCCAGACAACAGCCATCACAAC
ATCTACGAATGGATCAGTACTCACCGAGACCGACCAGTCCAAACTGGTAG
AGGGCATTGAAACTTTAATTGAGGGCTTGCCACGTATTCTCGACGTTGAT
GGCTCAGAATGCGCTGCCCAAATGACATTTACGCATACCCCTGCTCTGCC
AACCATATTCACTTCAGACGCTGTAACGACTGTGACCAACACTTTTTCCG
TGAAGAGCAGCATTTGTGAAACGAAAGGGGCTTTTGATTGCAACTTCAGG
TACACTGAGAGTGGCGGAGATCTTGATGCGGCCAATTTAGAGTTCGTCAA
CATTCAGGGTTGCCCTGAGTAG
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Coding sequence (CDS) from alignment at tig00004419_pilon:975236..976807-

>Gchil2290.t1 ID=Gchil2290.t1|Name=Gchil2290.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1572bp|location=Sequence derived from alignment at tig00004419_pilon:975236..976807- (Gracilaria chilensis NLEC103_M9 male)
ATGGATCACATCTACAATGCCATCCCTTCAGGCTATGTTCCTGCGGTCGC
TACCGATCCCACCTTTGTACACCCCCGCGGAGCTCGCATATCTCGTCGTG
TCCGTATCGCCCTTGTTGTGGTTGTTACCACTCTAATGTTTGTTATGCTC
ACGTCTGGCCGAAATGACATTTCTTACTATGCCCATCGTCTGCAGTATGC
TTCTCGGCTCCATCGCCCACGCCATTATTTCACTCCGAGTCAGCCTGTGT
ATGTAGAAAGACAGTCTTCCTTCCCAGGCCTCTTTCAGGGCGTCGACGAG
CAACCAATTACTCAAGTACATCCTGGCCATCACGTGCAGCGCAGCCCCTA
CTACGGCCCAACTCCACAACATAAGCAGTGGCAATCTTCAAACCGCAGAC
CACATCTTGGAAGAAGCGTCGCACACACCGCCGATCCATCCGTCTGCGAA
GAAAAGACCTCCAGCTCCGTGTTTACCTTCGGTAAATGTCCTTCTGAGTG
CACACCATTTTCCGCTGGCCTTTTCGGAGAATGTGCCGGTCTGGTTCAAT
TTGGCTGTTCCTTGGAGATGTGTGCTTCTGGTTTCACGTGCAATCTTCGA
AAAGACTTGACCGACGAATTCGTGGTATGTCCTGGAGACAAGGTTGTCTT
TGAGAATGTCACCATTGACAGTCTCCAAGAGGTATCCTTTAAGCTCGATT
TGAGAGCCCCTCCTCTTAAGACCGATATGTACATGCTCAGTGATGGCACC
GGATCCATGTCAGTGGCCATCAGTACTGCTAAAGAAAGGGCGCTAGAGAT
CATGAACGTTTTTGGGTCCCGTCCTAACGTCAGATTCGGCGTGGGCATGT
TCCGAGACGAAAACGACCCTAACTACGGCTTCACCAACCAGCAATCTATA
ACGGACAACAAGGATCTGGTAACAGCAGCTATCAACGCCCAAAGTGCTGT
TGGTGGAGGCGATGTAGACGAGGCCAATCTAGTGGCCTTGTACAAAATTG
CTACGGACCCAAGTATCGGATGGAGAGAAGGTTCGCGCCGAATCCTGCTA
TATTTTGGAGATTATCCCGGTCATGAGCCTACGTGTATTTCTGGCGGCAC
TCGGCTGGATCGAAACTCGGTCATCGACGCTTTGAACAGCGCTTTCATCA
CCACAATTGCCATCAATTTCGGAAAAATGGATATCGTTCCGTCGCGATAT
GGCTGCAGTAGTGGCTCTGCCGGCTCAGGCCAGACAACAGCCATCACAAC
ATCTACGAATGGATCAGTACTCACCGAGACCGACCAGTCCAAACTGGTAG
AGGGCATTGAAACTTTAATTGAGGGCTTGCCACGTATTCTCGACGTTGAT
GGCTCAGAATGCGCTGCCCAAATGACATTTACGCATACCCCTGCTCTGCC
AACCATATTCACTTCAGACGCTGTAACGACTGTGACCAACACTTTTTCCG
TGAAGAGCAGCATTTGTGAAACGAAAGGGGCTTTTGATTGCAACTTCAGG
TACACTGAGAGTGGCGGAGATCTTGATGCGGCCAATTTAGAGTTCGTCAA
CATTCAGGGTTGCCCTGAGTAG
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