Gchil2284.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2284.t1
Unique NameGchil2284.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length168
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:856035..856538 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3847.GLYMA07G39830.1
Max annot lvl35493|Streptophyta
KEGG koko:K11267
Evalue3.78e-07
EggNOG OGsKOG1525@1|root,KOG1525@2759|Eukaryota,37KXZ@33090|Viridiplantae,3G77Y@35493|Streptophyta,4JH98@91835|fabids
DescriptionSister chromatid cohesion protein PDS5 homolog
COG categoryD
BRITEko00000,ko03036
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2284Gchil2284Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 856035..856538 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2284.t1.stop1Gchil2284.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 856035..856037 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2284.t1.CDS1Gchil2284.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 856035..856538 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2284.t1.exon1Gchil2284.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 856035..856538 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2284.t1.start1Gchil2284.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 856536..856538 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2284.t1Gchil2284.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 856035..856538 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2284.t1 ID=Gchil2284.t1|Name=Gchil2284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=168bp
MQNNELAAAVHDAIQDLDRSLSEGMGNVCEGSETTIPLSASHGSPARSTQ
RFEADFGPPEHKLSASRVQGDSPDLQQSTSDDHVATRMPIVGDKTHVYWP
TNNNFYGGTVAKHNQRTGKYSINHFDGDKEALKLEAEKWKFMGGGSTVEE
EDDDGSIEHEATVLEGH*
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spliced messenger RNA

>Gchil2284.t1 ID=Gchil2284.t1|Name=Gchil2284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00004419_pilon:856035..856538- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGAATAACGAGCTAGCAGCCGCTGTGCACGATGCAATTCAAGACCT
AGACAGAAGCTTATCAGAGGGGATGGGCAATGTTTGTGAAGGCTCAGAGA
CCACAATACCCCTTTCTGCATCTCATGGCAGTCCAGCAAGAAGCACTCAG
CGCTTTGAAGCTGACTTTGGTCCCCCTGAACACAAACTCTCAGCATCTCG
AGTTCAAGGAGACAGCCCAGACCTACAGCAAAGCACGTCTGACGATCATG
TAGCTACTCGTATGCCGATTGTTGGAGATAAGACGCATGTCTACTGGCCA
ACCAACAACAATTTTTACGGAGGTACTGTAGCGAAGCATAACCAGAGGAC
TGGGAAGTACTCCATCAACCACTTTGACGGAGACAAGGAAGCATTGAAGT
TGGAAGCCGAGAAGTGGAAGTTTATGGGAGGAGGTTCGACAGTGGAAGAA
GAAGATGATGACGGATCGATTGAACACGAAGCTACTGTACTCGAAGGCCA
TTAA
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protein sequence of Gchil2284.t1

>Gchil2284.t1 ID=Gchil2284.t1|Name=Gchil2284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=168bp
MQNNELAAAVHDAIQDLDRSLSEGMGNVCEGSETTIPLSASHGSPARSTQ
RFEADFGPPEHKLSASRVQGDSPDLQQSTSDDHVATRMPIVGDKTHVYWP
TNNNFYGGTVAKHNQRTGKYSINHFDGDKEALKLEAEKWKFMGGGSTVEE
EDDDGSIEHEATVLEGH*
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mRNA from alignment at tig00004419_pilon:856035..856538-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2284.t1 ID=Gchil2284.t1|Name=Gchil2284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=504bp|location=Sequence derived from alignment at tig00004419_pilon:856035..856538- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGAATAACGAGCTAGCAGCCGCTGTGCACGATGCAATTCAAGACCT
AGACAGAAGCTTATCAGAGGGGATGGGCAATGTTTGTGAAGGCTCAGAGA
CCACAATACCCCTTTCTGCATCTCATGGCAGTCCAGCAAGAAGCACTCAG
CGCTTTGAAGCTGACTTTGGTCCCCCTGAACACAAACTCTCAGCATCTCG
AGTTCAAGGAGACAGCCCAGACCTACAGCAAAGCACGTCTGACGATCATG
TAGCTACTCGTATGCCGATTGTTGGAGATAAGACGCATGTCTACTGGCCA
ACCAACAACAATTTTTACGGAGGTACTGTAGCGAAGCATAACCAGAGGAC
TGGGAAGTACTCCATCAACCACTTTGACGGAGACAAGGAAGCATTGAAGT
TGGAAGCCGAGAAGTGGAAGTTTATGGGAGGAGGTTCGACAGTGGAAGAA
GAAGATGATGACGGATCGATTGAACACGAAGCTACTGTACTCGAAGGCCA
TTAA
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Coding sequence (CDS) from alignment at tig00004419_pilon:856035..856538-

>Gchil2284.t1 ID=Gchil2284.t1|Name=Gchil2284.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=504bp|location=Sequence derived from alignment at tig00004419_pilon:856035..856538- (Gracilaria chilensis NLEC103_M9 male)
ATGCAGAATAACGAGCTAGCAGCCGCTGTGCACGATGCAATTCAAGACCT
AGACAGAAGCTTATCAGAGGGGATGGGCAATGTTTGTGAAGGCTCAGAGA
CCACAATACCCCTTTCTGCATCTCATGGCAGTCCAGCAAGAAGCACTCAG
CGCTTTGAAGCTGACTTTGGTCCCCCTGAACACAAACTCTCAGCATCTCG
AGTTCAAGGAGACAGCCCAGACCTACAGCAAAGCACGTCTGACGATCATG
TAGCTACTCGTATGCCGATTGTTGGAGATAAGACGCATGTCTACTGGCCA
ACCAACAACAATTTTTACGGAGGTACTGTAGCGAAGCATAACCAGAGGAC
TGGGAAGTACTCCATCAACCACTTTGACGGAGACAAGGAAGCATTGAAGT
TGGAAGCCGAGAAGTGGAAGTTTATGGGAGGAGGTTCGACAGTGGAAGAA
GAAGATGATGACGGATCGATTGAACACGAAGCTACTGTACTCGAAGGCCA
TTAA
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