Gchil2281.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2281.t1
Unique Name	Gchil2281.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	666

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004419_pilon	contig	tig00004419_pilon:791143..793140 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1313172.YM304_00980
PFAMs	Beta_propel
Max annot lvl	201174\|Actinobacteria
Evalue	3.06e-121
EggNOG OGs	COG1948@1\|root,COG4880@2\|Bacteria,2I8JU@201174\|Actinobacteria
Description	Beta propeller domain
COG category	L

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2281	Gchil2281	Gracilaria chilensis NLEC103_M9 male	gene	tig00004419_pilon 791143..793140 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2281.t1.start1	Gchil2281.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004419_pilon 791143..791145 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2281.t1.CDS1	Gchil2281.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004419_pilon 791143..793140 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2281.t1.exon1	Gchil2281.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004419_pilon 791143..793140 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2281.t1.stop1	Gchil2281.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004419_pilon 793138..793140 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2281.t1	Gchil2281.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004419_pilon 791143..793140 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004419_pilon:791143..793140+
coding sequence from alignment at tig00004419_pilon:791143..793140+

mRNA sequence

>Gchil2281.t1 ID=Gchil2281.t1|Name=Gchil2281.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=666bp
MKLAHTRHSAVLAAVLLHLLLHSTQAVSLNRYNSCPQLLSYFKENALSRV
GAYGLSDSRNFQPFSRPFYCFPKRGGPGGPGPILFSQPGMIADASAPAAS
SAGAQPAPEAREPVAGVDFSETNVQVAGVDEPDIIKTDGNRVFIIRGNKF
FVLKVASGGTDGRVTGQLTLPSYAREMLIQGDHLLVIGQTYGNIYPSPRL
VSDVGFFFDQSLTTVYQIKVTNGIPKLVATLKMEGRYLNSREVDGVARIV
MLYRPHLRFKYPSCLIPYDEAKTHNRDIIQNSSERDWYPSYSLKVEGRSG
QTTNLISSCSNVYIPGIFPGFELLTVVTLPVAGNLKPTGSVSIVSEGDEV
YATATSLYVTTTEYRWDFFGFEDNIRSGSNFKTSMHKFSLNNYGANYVAS
GEVSGSVLNQFSMHEYDGIFFIATTDGAPWWGARDQSSSKVTSFRTNGYG
QSLRKLGEVGNLGKGERIFAVRYVKDTAYVVTFRQIDPLYVIDLSRPWWL
RVTGELKIPGFSSYLHPISPGRILGVGQDATLDGRTTGAKVTLFDVSDKT
NPTELSSWTLQGSSTAAQWDHRAFLYWAPESVAVLPVSAYLSSNRFIGSV
VLDVSESEIKERGRITHETLSSSRYTPSIERNLVLGGEHLWSLSSKQIQV
NNIKDLSKESSTTLN*

spliced messenger RNA

>Gchil2281.t1 ID=Gchil2281.t1|Name=Gchil2281.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1998bp|location=Sequence derived from alignment at tig00004419_pilon:791143..793140+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCTTGCCCACACACGCCACAGCGCCGTCCTGGCGGCTGTGCTTCT
TCACCTTCTTCTGCACAGCACCCAAGCCGTGTCGCTTAACCGCTACAACA
GCTGCCCGCAATTGCTGAGCTACTTCAAGGAAAATGCTCTGTCGCGAGTC
GGTGCGTACGGTCTCAGCGACTCGAGAAACTTCCAGCCATTCTCGCGCCC
CTTTTACTGTTTTCCAAAAAGAGGAGGACCCGGCGGCCCAGGACCCATCC
TCTTTTCTCAACCTGGAATGATTGCGGACGCTAGTGCTCCGGCTGCATCA
AGCGCAGGTGCACAACCAGCGCCGGAAGCGCGTGAGCCAGTGGCCGGCGT
GGACTTCTCCGAAACTAATGTGCAGGTGGCAGGCGTTGATGAGCCCGATA
TCATAAAGACTGATGGCAATCGCGTTTTTATCATCCGAGGAAATAAGTTC
TTCGTTCTCAAAGTCGCTTCCGGTGGTACCGATGGCAGAGTAACAGGACA
GTTGACTCTGCCTTCGTATGCGAGAGAAATGCTTATTCAAGGTGATCACT
TGCTGGTAATCGGGCAGACATACGGAAATATTTACCCATCTCCTCGCTTG
GTCTCCGACGTTGGTTTCTTCTTTGATCAAAGCTTGACCACCGTCTATCA
AATCAAGGTGACAAATGGAATTCCTAAATTGGTGGCCACTCTTAAAATGG
AAGGCCGTTACTTGAATTCGCGCGAAGTGGACGGAGTGGCTCGAATCGTC
ATGCTTTACAGGCCACACCTGAGATTCAAGTACCCATCTTGTTTGATACC
CTACGATGAGGCGAAGACACACAATCGCGATATAATTCAAAATTCTAGTG
AAAGGGATTGGTACCCTAGCTACTCTCTCAAGGTGGAAGGTCGCAGTGGC
CAGACAACTAATTTGATTTCTTCCTGTTCCAACGTGTACATTCCAGGAAT
CTTCCCAGGGTTTGAGCTTCTTACAGTTGTCACTCTTCCTGTTGCCGGAA
ATCTGAAGCCAACCGGGAGCGTTTCAATCGTATCCGAAGGTGACGAGGTG
TATGCAACTGCGACCTCTCTGTACGTCACCACAACAGAGTACCGATGGGA
CTTCTTTGGCTTTGAAGACAATATCAGATCTGGTAGTAACTTCAAGACAT
CCATGCACAAGTTCTCGTTGAACAACTATGGCGCCAATTACGTAGCAAGC
GGGGAAGTCTCGGGAAGCGTCTTGAATCAGTTCTCCATGCATGAATACGA
CGGAATCTTCTTCATTGCCACCACTGATGGCGCACCGTGGTGGGGTGCTC
GCGACCAAAGTTCAAGCAAGGTGACATCGTTTAGGACAAATGGTTACGGC
CAAAGCTTGCGAAAGTTAGGCGAAGTGGGAAATCTTGGAAAGGGAGAGCG
CATATTCGCGGTTCGTTACGTGAAGGATACAGCGTATGTGGTGACATTCA
GACAGATCGATCCTCTGTATGTCATCGATTTGTCACGTCCGTGGTGGCTG
AGAGTAACCGGAGAGCTGAAGATTCCAGGATTTAGTTCTTATCTTCATCC
AATATCGCCTGGTCGCATACTTGGCGTTGGTCAGGATGCTACTCTGGATG
GAAGAACGACGGGTGCAAAAGTTACATTGTTCGATGTGTCAGACAAGACA
AATCCTACTGAGCTTTCTTCATGGACGCTACAAGGAAGTAGCACTGCTGC
GCAATGGGATCATCGAGCATTCTTGTACTGGGCACCAGAGTCTGTTGCAG
TGCTTCCGGTCTCGGCGTATCTCAGCTCCAATCGGTTTATTGGATCGGTT
GTGTTGGATGTTTCTGAGAGTGAGATAAAGGAGCGGGGTCGCATCACACA
TGAAACGTTGTCATCAAGTAGGTATACACCGTCGATCGAACGAAATCTTG
TGCTTGGTGGTGAGCATCTGTGGTCTCTTTCCTCAAAACAAATTCAGGTT
AACAACATCAAGGATTTGTCTAAGGAGTCCTCTACTACGCTGAATTAA

protein sequence of Gchil2281.t1

>Gchil2281.t1 ID=Gchil2281.t1|Name=Gchil2281.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=666bp
MKLAHTRHSAVLAAVLLHLLLHSTQAVSLNRYNSCPQLLSYFKENALSRV
GAYGLSDSRNFQPFSRPFYCFPKRGGPGGPGPILFSQPGMIADASAPAAS
SAGAQPAPEAREPVAGVDFSETNVQVAGVDEPDIIKTDGNRVFIIRGNKF
FVLKVASGGTDGRVTGQLTLPSYAREMLIQGDHLLVIGQTYGNIYPSPRL
VSDVGFFFDQSLTTVYQIKVTNGIPKLVATLKMEGRYLNSREVDGVARIV
MLYRPHLRFKYPSCLIPYDEAKTHNRDIIQNSSERDWYPSYSLKVEGRSG
QTTNLISSCSNVYIPGIFPGFELLTVVTLPVAGNLKPTGSVSIVSEGDEV
YATATSLYVTTTEYRWDFFGFEDNIRSGSNFKTSMHKFSLNNYGANYVAS
GEVSGSVLNQFSMHEYDGIFFIATTDGAPWWGARDQSSSKVTSFRTNGYG
QSLRKLGEVGNLGKGERIFAVRYVKDTAYVVTFRQIDPLYVIDLSRPWWL
RVTGELKIPGFSSYLHPISPGRILGVGQDATLDGRTTGAKVTLFDVSDKT
NPTELSSWTLQGSSTAAQWDHRAFLYWAPESVAVLPVSAYLSSNRFIGSV
VLDVSESEIKERGRITHETLSSSRYTPSIERNLVLGGEHLWSLSSKQIQV
NNIKDLSKESSTTLN*

mRNA from alignment at tig00004419_pilon:791143..793140+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2281.t1 ID=Gchil2281.t1|Name=Gchil2281.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1998bp|location=Sequence derived from alignment at tig00004419_pilon:791143..793140+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCTTGCCCACACACGCCACAGCGCCGTCCTGGCGGCTGTGCTTCT
TCACCTTCTTCTGCACAGCACCCAAGCCGTGTCGCTTAACCGCTACAACA
GCTGCCCGCAATTGCTGAGCTACTTCAAGGAAAATGCTCTGTCGCGAGTC
GGTGCGTACGGTCTCAGCGACTCGAGAAACTTCCAGCCATTCTCGCGCCC
CTTTTACTGTTTTCCAAAAAGAGGAGGACCCGGCGGCCCAGGACCCATCC
TCTTTTCTCAACCTGGAATGATTGCGGACGCTAGTGCTCCGGCTGCATCA
AGCGCAGGTGCACAACCAGCGCCGGAAGCGCGTGAGCCAGTGGCCGGCGT
GGACTTCTCCGAAACTAATGTGCAGGTGGCAGGCGTTGATGAGCCCGATA
TCATAAAGACTGATGGCAATCGCGTTTTTATCATCCGAGGAAATAAGTTC
TTCGTTCTCAAAGTCGCTTCCGGTGGTACCGATGGCAGAGTAACAGGACA
GTTGACTCTGCCTTCGTATGCGAGAGAAATGCTTATTCAAGGTGATCACT
TGCTGGTAATCGGGCAGACATACGGAAATATTTACCCATCTCCTCGCTTG
GTCTCCGACGTTGGTTTCTTCTTTGATCAAAGCTTGACCACCGTCTATCA
AATCAAGGTGACAAATGGAATTCCTAAATTGGTGGCCACTCTTAAAATGG
AAGGCCGTTACTTGAATTCGCGCGAAGTGGACGGAGTGGCTCGAATCGTC
ATGCTTTACAGGCCACACCTGAGATTCAAGTACCCATCTTGTTTGATACC
CTACGATGAGGCGAAGACACACAATCGCGATATAATTCAAAATTCTAGTG
AAAGGGATTGGTACCCTAGCTACTCTCTCAAGGTGGAAGGTCGCAGTGGC
CAGACAACTAATTTGATTTCTTCCTGTTCCAACGTGTACATTCCAGGAAT
CTTCCCAGGGTTTGAGCTTCTTACAGTTGTCACTCTTCCTGTTGCCGGAA
ATCTGAAGCCAACCGGGAGCGTTTCAATCGTATCCGAAGGTGACGAGGTG
TATGCAACTGCGACCTCTCTGTACGTCACCACAACAGAGTACCGATGGGA
CTTCTTTGGCTTTGAAGACAATATCAGATCTGGTAGTAACTTCAAGACAT
CCATGCACAAGTTCTCGTTGAACAACTATGGCGCCAATTACGTAGCAAGC
GGGGAAGTCTCGGGAAGCGTCTTGAATCAGTTCTCCATGCATGAATACGA
CGGAATCTTCTTCATTGCCACCACTGATGGCGCACCGTGGTGGGGTGCTC
GCGACCAAAGTTCAAGCAAGGTGACATCGTTTAGGACAAATGGTTACGGC
CAAAGCTTGCGAAAGTTAGGCGAAGTGGGAAATCTTGGAAAGGGAGAGCG
CATATTCGCGGTTCGTTACGTGAAGGATACAGCGTATGTGGTGACATTCA
GACAGATCGATCCTCTGTATGTCATCGATTTGTCACGTCCGTGGTGGCTG
AGAGTAACCGGAGAGCTGAAGATTCCAGGATTTAGTTCTTATCTTCATCC
AATATCGCCTGGTCGCATACTTGGCGTTGGTCAGGATGCTACTCTGGATG
GAAGAACGACGGGTGCAAAAGTTACATTGTTCGATGTGTCAGACAAGACA
AATCCTACTGAGCTTTCTTCATGGACGCTACAAGGAAGTAGCACTGCTGC
GCAATGGGATCATCGAGCATTCTTGTACTGGGCACCAGAGTCTGTTGCAG
TGCTTCCGGTCTCGGCGTATCTCAGCTCCAATCGGTTTATTGGATCGGTT
GTGTTGGATGTTTCTGAGAGTGAGATAAAGGAGCGGGGTCGCATCACACA
TGAAACGTTGTCATCAAGTAGGTATACACCGTCGATCGAACGAAATCTTG
TGCTTGGTGGTGAGCATCTGTGGTCTCTTTCCTCAAAACAAATTCAGGTT
AACAACATCAAGGATTTGTCTAAGGAGTCCTCTACTACGCTGAATTAA

Coding sequence (CDS) from alignment at tig00004419_pilon:791143..793140+

>Gchil2281.t1 ID=Gchil2281.t1|Name=Gchil2281.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1998bp|location=Sequence derived from alignment at tig00004419_pilon:791143..793140+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCTTGCCCACACACGCCACAGCGCCGTCCTGGCGGCTGTGCTTCT
TCACCTTCTTCTGCACAGCACCCAAGCCGTGTCGCTTAACCGCTACAACA
GCTGCCCGCAATTGCTGAGCTACTTCAAGGAAAATGCTCTGTCGCGAGTC
GGTGCGTACGGTCTCAGCGACTCGAGAAACTTCCAGCCATTCTCGCGCCC
CTTTTACTGTTTTCCAAAAAGAGGAGGACCCGGCGGCCCAGGACCCATCC
TCTTTTCTCAACCTGGAATGATTGCGGACGCTAGTGCTCCGGCTGCATCA
AGCGCAGGTGCACAACCAGCGCCGGAAGCGCGTGAGCCAGTGGCCGGCGT
GGACTTCTCCGAAACTAATGTGCAGGTGGCAGGCGTTGATGAGCCCGATA
TCATAAAGACTGATGGCAATCGCGTTTTTATCATCCGAGGAAATAAGTTC
TTCGTTCTCAAAGTCGCTTCCGGTGGTACCGATGGCAGAGTAACAGGACA
GTTGACTCTGCCTTCGTATGCGAGAGAAATGCTTATTCAAGGTGATCACT
TGCTGGTAATCGGGCAGACATACGGAAATATTTACCCATCTCCTCGCTTG
GTCTCCGACGTTGGTTTCTTCTTTGATCAAAGCTTGACCACCGTCTATCA
AATCAAGGTGACAAATGGAATTCCTAAATTGGTGGCCACTCTTAAAATGG
AAGGCCGTTACTTGAATTCGCGCGAAGTGGACGGAGTGGCTCGAATCGTC
ATGCTTTACAGGCCACACCTGAGATTCAAGTACCCATCTTGTTTGATACC
CTACGATGAGGCGAAGACACACAATCGCGATATAATTCAAAATTCTAGTG
AAAGGGATTGGTACCCTAGCTACTCTCTCAAGGTGGAAGGTCGCAGTGGC
CAGACAACTAATTTGATTTCTTCCTGTTCCAACGTGTACATTCCAGGAAT
CTTCCCAGGGTTTGAGCTTCTTACAGTTGTCACTCTTCCTGTTGCCGGAA
ATCTGAAGCCAACCGGGAGCGTTTCAATCGTATCCGAAGGTGACGAGGTG
TATGCAACTGCGACCTCTCTGTACGTCACCACAACAGAGTACCGATGGGA
CTTCTTTGGCTTTGAAGACAATATCAGATCTGGTAGTAACTTCAAGACAT
CCATGCACAAGTTCTCGTTGAACAACTATGGCGCCAATTACGTAGCAAGC
GGGGAAGTCTCGGGAAGCGTCTTGAATCAGTTCTCCATGCATGAATACGA
CGGAATCTTCTTCATTGCCACCACTGATGGCGCACCGTGGTGGGGTGCTC
GCGACCAAAGTTCAAGCAAGGTGACATCGTTTAGGACAAATGGTTACGGC
CAAAGCTTGCGAAAGTTAGGCGAAGTGGGAAATCTTGGAAAGGGAGAGCG
CATATTCGCGGTTCGTTACGTGAAGGATACAGCGTATGTGGTGACATTCA
GACAGATCGATCCTCTGTATGTCATCGATTTGTCACGTCCGTGGTGGCTG
AGAGTAACCGGAGAGCTGAAGATTCCAGGATTTAGTTCTTATCTTCATCC
AATATCGCCTGGTCGCATACTTGGCGTTGGTCAGGATGCTACTCTGGATG
GAAGAACGACGGGTGCAAAAGTTACATTGTTCGATGTGTCAGACAAGACA
AATCCTACTGAGCTTTCTTCATGGACGCTACAAGGAAGTAGCACTGCTGC
GCAATGGGATCATCGAGCATTCTTGTACTGGGCACCAGAGTCTGTTGCAG
TGCTTCCGGTCTCGGCGTATCTCAGCTCCAATCGGTTTATTGGATCGGTT
GTGTTGGATGTTTCTGAGAGTGAGATAAAGGAGCGGGGTCGCATCACACA
TGAAACGTTGTCATCAAGTAGGTATACACCGTCGATCGAACGAAATCTTG
TGCTTGGTGGTGAGCATCTGTGGTCTCTTTCCTCAAAACAAATTCAGGTT
AACAACATCAAGGATTTGTCTAAGGAGTCCTCTACTACGCTGAATTAA