Gchil2280.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2280.t1
Unique NameGchil2280.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length176
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:780779..781787 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2280Gchil2280Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 780779..781787 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2280.t1Gchil2280.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 780779..781787 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2280.t1.start1Gchil2280.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 780779..780781 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2280.t1.CDS1Gchil2280.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 780779..780884 +
Gchil2280.t1.CDS2Gchil2280.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 781366..781787 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2280.t1.exon1Gchil2280.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 780779..780884 +
Gchil2280.t1.exon2Gchil2280.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 781366..781787 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2280.t1.intron1Gchil2280.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 780885..781365 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2280.t1.stop1Gchil2280.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 781785..781787 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2280.t1 ID=Gchil2280.t1|Name=Gchil2280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=176bp
MKRSLAATVLIAVLLTPTLGILIRQAQLGLLVRMEVEGRDGKSDKGRAGE
VGGDGCALGAVKAGGITCNRENNGDDGLRASGEDGDAGGDGCEPGSSAGK
GDDGGDGDVIAYGDDRVRGVALVVAVGEEAEGGTGCDFCGNGDNRGEGGE
EIAGDGTFVGPMAIMEKTAGLEEMA*
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spliced messenger RNA

>Gchil2280.t1 ID=Gchil2280.t1|Name=Gchil2280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=528bp|location=Sequence derived from alignment at tig00004419_pilon:780779..781787+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGCGTTCGCTTGCAGCTACTGTGCTTATCGCAGTTTTGCTCACCCC
AACGTTGGGCATCCTCATTCGACAAGCGCAACTGGGACTGCTGGTACGGA
TGGAAGTAGAAGGACGTGACGGGAAAAGCGATAAAGGCCGCGCGGGAGAG
GTTGGAGGAGACGGTTGCGCCCTTGGAGCCGTCAAAGCTGGTGGTATCAC
CTGCAATAGGGAAAATAACGGAGATGATGGATTGCGTGCAAGTGGAGAAG
ATGGGGACGCCGGTGGGGACGGATGCGAACCTGGCTCAAGCGCCGGAAAA
GGTGACGATGGCGGGGATGGCGATGTGATTGCATATGGGGATGATAGAGT
ACGGGGAGTTGCATTAGTTGTGGCTGTGGGTGAAGAAGCAGAGGGCGGTA
CTGGATGTGATTTCTGTGGCAATGGAGACAATAGAGGCGAGGGTGGCGAG
GAAATTGCAGGTGATGGGACTTTTGTCGGGCCGATGGCGATAATGGAGAA
GACGGCGGGTCTGGAGGAGATGGCGtaa
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protein sequence of Gchil2280.t1

>Gchil2280.t1 ID=Gchil2280.t1|Name=Gchil2280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=176bp
MKRSLAATVLIAVLLTPTLGILIRQAQLGLLVRMEVEGRDGKSDKGRAGE
VGGDGCALGAVKAGGITCNRENNGDDGLRASGEDGDAGGDGCEPGSSAGK
GDDGGDGDVIAYGDDRVRGVALVVAVGEEAEGGTGCDFCGNGDNRGEGGE
EIAGDGTFVGPMAIMEKTAGLEEMA*
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mRNA from alignment at tig00004419_pilon:780779..781787+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2280.t1 ID=Gchil2280.t1|Name=Gchil2280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1009bp|location=Sequence derived from alignment at tig00004419_pilon:780779..781787+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCGTTCGCTTGCAGCTACTGTGCTTATCGCAGTTTTGCTCACCCC
AACGTTGGGCATCCTCATTCGACAAGCGCAACTGGGACTGCTGGTACGGA
TGGAAGGTAGTGGCGGGGCCGAGGGGCAGCGGtgtgaaggagcaacgata
acggttgagctctgtaagccgccggggcctgaggtatcatacagacgcca
cgtggactggccgacctatgctgagctcatttaggtttttatttgtttta
attagtggactagattagcattacagtgccagggagatcccagcgcctcc
ccattgttatttacttggctcgtgtgacgcttctcccttagagtaaggta
taaaccgttaggatactaaattaccctctttggtacgatagttttacaaa
tcggtcttcacgaaaacgtttccgtagctccaacctgtaagactacgcaa
taaacgccataccattgcactcagtactctggaagtgccgccgttaaaga
taataaacttaagatccgctctaccacgctaccaccggttgataccagta
cactgccctaatttttattgcgttaGAAGCGGTCTAGTAGAAGGACGTGA
CGGGAAAAGCGATAAAGGCCGCGCGGGAGAGGTTGGAGGAGACGGTTGCG
CCCTTGGAGCCGTCAAAGCTGGTGGTATCACCTGCAATAGGGAAAATAAC
GGAGATGATGGATTGCGTGCAAGTGGAGAAGATGGGGACGCCGGTGGGGA
CGGATGCGAACCTGGCTCAAGCGCCGGAAAAGGTGACGATGGCGGGGATG
GCGATGTGATTGCATATGGGGATGATAGAGTACGGGGAGTTGCATTAGTT
GTGGCTGTGGGTGAAGAAGCAGAGGGCGGTACTGGATGTGATTTCTGTGG
CAATGGAGACAATAGAGGCGAGGGTGGCGAGGAAATTGCAGGTGATGGGA
CTTTTGTCGGGCCGATGGCGATAATGGAGAAGACGGCGGGTCTGGAGGAG
ATGGCGtaa
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Coding sequence (CDS) from alignment at tig00004419_pilon:780779..781787+

>Gchil2280.t1 ID=Gchil2280.t1|Name=Gchil2280.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=528bp|location=Sequence derived from alignment at tig00004419_pilon:780779..781787+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGCGTTCGCTTGCAGCTACTGTGCTTATCGCAGTTTTGCTCACCCC
AACGTTGGGCATCCTCATTCGACAAGCGCAACTGGGACTGCTGGTACGGA
TGGAAGTAGAAGGACGTGACGGGAAAAGCGATAAAGGCCGCGCGGGAGAG
GTTGGAGGAGACGGTTGCGCCCTTGGAGCCGTCAAAGCTGGTGGTATCAC
CTGCAATAGGGAAAATAACGGAGATGATGGATTGCGTGCAAGTGGAGAAG
ATGGGGACGCCGGTGGGGACGGATGCGAACCTGGCTCAAGCGCCGGAAAA
GGTGACGATGGCGGGGATGGCGATGTGATTGCATATGGGGATGATAGAGT
ACGGGGAGTTGCATTAGTTGTGGCTGTGGGTGAAGAAGCAGAGGGCGGTA
CTGGATGTGATTTCTGTGGCAATGGAGACAATAGAGGCGAGGGTGGCGAG
GAAATTGCAGGTGATGGGACTTTTGTCGGGCCGATGGCGATAATGGAGAA
GACGGCGGGTCTGGAGGAGATGGCGtaa
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