Gchil2274.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2274.t1
Unique Name	Gchil2274.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	383

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00004419_pilon	contig	tig00004419_pilon:572800..573948 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	28583.AMAG_16444T0
PFAMs	Inhibitor_I9,Peptidase_S8
Max annot lvl	4751\|Fungi
Evalue	2.03e-37
EggNOG OGs	COG1404@1\|root,KOG1153@2759\|Eukaryota,38H6S@33154\|Opisthokonta,3NU05@4751\|Fungi
Description	Belongs to the peptidase S8 family
COG category	O

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2274	Gchil2274	Gracilaria chilensis NLEC103_M9 male	gene	tig00004419_pilon 572800..573948 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2274.t1.start1	Gchil2274.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00004419_pilon 572800..572802 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2274.t1.CDS1	Gchil2274.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00004419_pilon 572800..573948 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2274.t1.exon1	Gchil2274.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00004419_pilon 572800..573948 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2274.t1.stop1	Gchil2274.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00004419_pilon 573946..573948 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2274.t1	Gchil2274.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00004419_pilon 572800..573948 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00004419_pilon:572800..573948+
coding sequence from alignment at tig00004419_pilon:572800..573948+

mRNA sequence

>Gchil2274.t1 ID=Gchil2274.t1|Name=Gchil2274.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=383bp
MISMRTTSGQAIQGAFIAEVNGRCTGPCRQAIRAALDSDSATAGCRATRA
SVIGDLSFVDINCPPSSSPSEAVVDSVLTAGTSATNVGILLVKQDLVVST
AGTPTDLWGVDEADGGVMRQNGNPVRDGLRTCMNSNNGAEVNVWVLDTGC
TPTAGGFCQGYYGGSPICKDNNGHGTHVGGTVNHPTFGVAPSAVRSCVKV
LSDSGSGSYSNVIRGIEFAANNRGAFANGDVINMSLSGSRFEPVNDAVVA
ARGLGVFFAVAAGNSAQNACDFSPASAPGGGIFTVQAHDIQLNPASFTNF
ATKDLKCTDLSAPGVSILSEGLSPGSSRRLSGTSMASPHVAGACAILLSD
GLTPNRKRLTAKSVPIRINGALNRRSLGLECA*

spliced messenger RNA

>Gchil2274.t1 ID=Gchil2274.t1|Name=Gchil2274.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00004419_pilon:572800..573948+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATTTCCATGAGAACAACTTCTGGGCAGGCTATTCAAGGTGCCTTCAT
CGCTGAGGTGAATGGGAGATGCACAGGACCCTGTCGCCAGGCCATTCGGG
CCGCCCTTGATTCTGACTCGGCAACGGCTGGATGCCGCGCTACGAGAGCT
TCAGTGATTGGGGATCTGTCGTTTGTTGACATCAACTGCCCGCCTTCGTC
GTCTCCATCGGAAGCAGTTGTTGATAGCGTTCTCACAGCCGGGACAAGTG
CCACGAACGTTGGTATATTATTGGTGAAACAAGATCTGGTCGTCTCCACA
GCGGGGACGCCTACCGATCTTTGGGGTGTAGACGAGGCCGATGGCGGTGT
GATGAGACAGAACGGAAACCCCGTGAGAGATGGGCTGCGTACATGTATGA
ATAGCAATAACGGTGCAGAGGTGAACGTGTGGGTTCTGGACACGGGGTGT
ACTCCAACCGCAGGCGGTTTTTGTCAGGGATACTACGGGGGCTCGCCGAT
ATGCAAAGATAACAATGGACATGGAACGCATGTGGGGGGCACAGTTAACC
ATCCGACATTCGGGGTTGCCCCATCTGCGGTTCGGAGCTGTGTCAAGGTG
CTGAGCGACAGCGGATCTGGGTCGTACTCAAACGTGATCCGCGGAATTGA
ATTCGCGGCGAACAATAGAGGGGCCTTTGCTAATGGAGATGTTATCAATA
TGTCACTGTCGGGATCCAGATTCGAGCCTGTGAATGATGCCGTTGTAGCT
GCAAGGGGACTGGGAGTCTTCTTCGCCGTCGCGGCTGGAAACAGCGCTCA
GAATGCCTGTGACTTTTCACCGGCATCAGCTCCTGGCGGTGGCATATTCA
CTGTTCAGGCACACGATATACAATTGAACCCCGCCAGCTTCACAAACTTT
GCAACGAAGGACTTGAAATGCACAGATTTGTCTGCGCCCGGAGTTTCTAT
CTTGTCCGAAGGCCTAAGCCCTGGTTCTTCTAGAAGGCTATCCGGTACCT
CCATGGCATCCCCACATGTTGCGGGTGCTTGTGCAATCTTGCTGTCTGAC
GGGTTGACGCCCAATAGGAAGCGTTTGACGGCCAAAAGCGTGCCAATCAG
GATCAATGGCGCTCTCAATCGCCGTTCTCTTGGTCTTGAATGCGCGTAA

protein sequence of Gchil2274.t1

>Gchil2274.t1 ID=Gchil2274.t1|Name=Gchil2274.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=383bp
MISMRTTSGQAIQGAFIAEVNGRCTGPCRQAIRAALDSDSATAGCRATRA
SVIGDLSFVDINCPPSSSPSEAVVDSVLTAGTSATNVGILLVKQDLVVST
AGTPTDLWGVDEADGGVMRQNGNPVRDGLRTCMNSNNGAEVNVWVLDTGC
TPTAGGFCQGYYGGSPICKDNNGHGTHVGGTVNHPTFGVAPSAVRSCVKV
LSDSGSGSYSNVIRGIEFAANNRGAFANGDVINMSLSGSRFEPVNDAVVA
ARGLGVFFAVAAGNSAQNACDFSPASAPGGGIFTVQAHDIQLNPASFTNF
ATKDLKCTDLSAPGVSILSEGLSPGSSRRLSGTSMASPHVAGACAILLSD
GLTPNRKRLTAKSVPIRINGALNRRSLGLECA*

mRNA from alignment at tig00004419_pilon:572800..573948+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2274.t1 ID=Gchil2274.t1|Name=Gchil2274.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1149bp|location=Sequence derived from alignment at tig00004419_pilon:572800..573948+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTTCCATGAGAACAACTTCTGGGCAGGCTATTCAAGGTGCCTTCAT
CGCTGAGGTGAATGGGAGATGCACAGGACCCTGTCGCCAGGCCATTCGGG
CCGCCCTTGATTCTGACTCGGCAACGGCTGGATGCCGCGCTACGAGAGCT
TCAGTGATTGGGGATCTGTCGTTTGTTGACATCAACTGCCCGCCTTCGTC
GTCTCCATCGGAAGCAGTTGTTGATAGCGTTCTCACAGCCGGGACAAGTG
CCACGAACGTTGGTATATTATTGGTGAAACAAGATCTGGTCGTCTCCACA
GCGGGGACGCCTACCGATCTTTGGGGTGTAGACGAGGCCGATGGCGGTGT
GATGAGACAGAACGGAAACCCCGTGAGAGATGGGCTGCGTACATGTATGA
ATAGCAATAACGGTGCAGAGGTGAACGTGTGGGTTCTGGACACGGGGTGT
ACTCCAACCGCAGGCGGTTTTTGTCAGGGATACTACGGGGGCTCGCCGAT
ATGCAAAGATAACAATGGACATGGAACGCATGTGGGGGGCACAGTTAACC
ATCCGACATTCGGGGTTGCCCCATCTGCGGTTCGGAGCTGTGTCAAGGTG
CTGAGCGACAGCGGATCTGGGTCGTACTCAAACGTGATCCGCGGAATTGA
ATTCGCGGCGAACAATAGAGGGGCCTTTGCTAATGGAGATGTTATCAATA
TGTCACTGTCGGGATCCAGATTCGAGCCTGTGAATGATGCCGTTGTAGCT
GCAAGGGGACTGGGAGTCTTCTTCGCCGTCGCGGCTGGAAACAGCGCTCA
GAATGCCTGTGACTTTTCACCGGCATCAGCTCCTGGCGGTGGCATATTCA
CTGTTCAGGCACACGATATACAATTGAACCCCGCCAGCTTCACAAACTTT
GCAACGAAGGACTTGAAATGCACAGATTTGTCTGCGCCCGGAGTTTCTAT
CTTGTCCGAAGGCCTAAGCCCTGGTTCTTCTAGAAGGCTATCCGGTACCT
CCATGGCATCCCCACATGTTGCGGGTGCTTGTGCAATCTTGCTGTCTGAC
GGGTTGACGCCCAATAGGAAGCGTTTGACGGCCAAAAGCGTGCCAATCAG
GATCAATGGCGCTCTCAATCGCCGTTCTCTTGGTCTTGAATGCGCGTAA

Coding sequence (CDS) from alignment at tig00004419_pilon:572800..573948+

>Gchil2274.t1 ID=Gchil2274.t1|Name=Gchil2274.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1149bp|location=Sequence derived from alignment at tig00004419_pilon:572800..573948+ (Gracilaria chilensis NLEC103_M9 male)
ATGATTTCCATGAGAACAACTTCTGGGCAGGCTATTCAAGGTGCCTTCAT
CGCTGAGGTGAATGGGAGATGCACAGGACCCTGTCGCCAGGCCATTCGGG
CCGCCCTTGATTCTGACTCGGCAACGGCTGGATGCCGCGCTACGAGAGCT
TCAGTGATTGGGGATCTGTCGTTTGTTGACATCAACTGCCCGCCTTCGTC
GTCTCCATCGGAAGCAGTTGTTGATAGCGTTCTCACAGCCGGGACAAGTG
CCACGAACGTTGGTATATTATTGGTGAAACAAGATCTGGTCGTCTCCACA
GCGGGGACGCCTACCGATCTTTGGGGTGTAGACGAGGCCGATGGCGGTGT
GATGAGACAGAACGGAAACCCCGTGAGAGATGGGCTGCGTACATGTATGA
ATAGCAATAACGGTGCAGAGGTGAACGTGTGGGTTCTGGACACGGGGTGT
ACTCCAACCGCAGGCGGTTTTTGTCAGGGATACTACGGGGGCTCGCCGAT
ATGCAAAGATAACAATGGACATGGAACGCATGTGGGGGGCACAGTTAACC
ATCCGACATTCGGGGTTGCCCCATCTGCGGTTCGGAGCTGTGTCAAGGTG
CTGAGCGACAGCGGATCTGGGTCGTACTCAAACGTGATCCGCGGAATTGA
ATTCGCGGCGAACAATAGAGGGGCCTTTGCTAATGGAGATGTTATCAATA
TGTCACTGTCGGGATCCAGATTCGAGCCTGTGAATGATGCCGTTGTAGCT
GCAAGGGGACTGGGAGTCTTCTTCGCCGTCGCGGCTGGAAACAGCGCTCA
GAATGCCTGTGACTTTTCACCGGCATCAGCTCCTGGCGGTGGCATATTCA
CTGTTCAGGCACACGATATACAATTGAACCCCGCCAGCTTCACAAACTTT
GCAACGAAGGACTTGAAATGCACAGATTTGTCTGCGCCCGGAGTTTCTAT
CTTGTCCGAAGGCCTAAGCCCTGGTTCTTCTAGAAGGCTATCCGGTACCT
CCATGGCATCCCCACATGTTGCGGGTGCTTGTGCAATCTTGCTGTCTGAC
GGGTTGACGCCCAATAGGAAGCGTTTGACGGCCAAAAGCGTGCCAATCAG
GATCAATGGCGCTCTCAATCGCCGTTCTCTTGGTCTTGAATGCGCGTAA