Gchil2273.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2273.t1
Unique NameGchil2273.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length378
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:521416..522904 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2273Gchil2273Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 521416..522904 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2273.t1Gchil2273.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 521416..522904 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2273.t1.start1Gchil2273.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 521416..521418 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2273.t1.CDS1Gchil2273.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 521416..521430 +
Gchil2273.t1.CDS2Gchil2273.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 521514..521973 +
Gchil2273.t1.CDS3Gchil2273.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 522246..522904 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2273.t1.exon1Gchil2273.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 521416..521430 +
Gchil2273.t1.exon2Gchil2273.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 521514..521973 +
Gchil2273.t1.exon3Gchil2273.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 522246..522904 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2273.t1.intron1Gchil2273.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 521431..521513 +
Gchil2273.t1.intron2Gchil2273.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 521974..522245 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2273.t1.stop1Gchil2273.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 522902..522904 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2273.t1 ID=Gchil2273.t1|Name=Gchil2273.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=378bp
MLEPSRDSHEVSVASQEGLSPVPNDNCFDAIFLRSLVLARVFGKNIKEVS
QLTDEIIKEKLSALSSNGRAVSYDELMADVKRSISIDALEPDACLRIIGL
QTAYLDLCDRRGWDFVDTAPKAAVRQIPAVVKSPELKTRLHYALKLEESE
IEDDFFGFYKSESKISSATDKSDEHVEESVPQASSSSEKSSTIPALVVAK
LSGFKFAYRVDSGADEVAVSDTIIQFPGDKGTFLPTLQLSKAKTFKAVDV
HTFKSPGMVQLCPTITTVAGPCRLRNIKAYIMPCNDNTLLPGAYSTVEIV
LGNPFLVPSGLDVTDFLANNIYHLSSLDYGALNTVKHPVKVGKLAVRLLT
DQPVQARLISLRYLLAYGTSFQMGIFL*
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spliced messenger RNA

>Gchil2273.t1 ID=Gchil2273.t1|Name=Gchil2273.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1134bp|location=Sequence derived from alignment at tig00004419_pilon:521416..522904+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTGGAACCTTCTCGTGACTCTCATGAGGTTTCTGTTGCATCTCAAGA
AGGACTATCTCCGGTTCCGAACGACAATTGCTTTGACGCAATTTTTCTCC
GCTCACTGGTTCTAGCTCGGGTCTTTGGCAAGAACATTAAGGAAGTGAGT
CAACTTACCGATGAAATTATTAAGGAAAAACTTTCTGCTCTTTCTTCGAA
TGGAAGAGCAGTTTCCTACGATGAACTAATGGCTGATGTTAAGCGTTCTA
TAAGTATAGACGCTTTGGAGCCGGATGCTTGTCTGCGAATCATCGGATTG
CAGACTGCATATCTCGATTTATGCGATCGTCGAGGATGGGACTTTGTTGA
TACAGCTCCCAAAGCTGCAGTAAGACAAATCCCTGCTGTTGTAAAATCTC
CGGAGCTTAAGACTCGATTACATTATGCTCTTAAGTTGGAGGAGAGTGAG
ATTGAAGACGACTTCTTCGGGTTCTATAAATCTGAATCCAAGATTTCATC
CGCAACCGATAAGTCGGATGAGCATGTGGAAGAATCTGTACCCCAAGCTT
CATCATCTTCAGAGAAATCTTCTACGATACCTGCGTTGGTCGTGGCGAAA
TTATCCGGTTTCAAATTCGCTTACCGCGTTGATTCCGGAGCCGATGAAGT
GGCCGTTTCCGATACTATCATCCAATTTCCGGGTGACAAGGGTACGTTTC
TTCCTACACTGCAGCTCAGCAAAGCTAAGACTTTTAAGGCTGTTGATGTG
CATACCTTCAAATCTCCTGGGATGGTGCAATTGTGTCCAACTATCACAAC
TGTGGCTGGACCTTGTCGTCTCAGGAACATCAAAGCATATATTATGCCTT
GCAATGATAATACCTTACTACCTGGTGCATACAGCACTGTTGAAATCGTA
TTAGGAAATCCTTTCTTAGTACCCTCTGGTCTCGATGTTACAGACTTCTT
AGCGAATAACATCTACCATCTATCCTCTCTCGATTATGGTGCTTTGAATA
CTGTCAAGCACCCTGTCAAAGTTGGAAAACTTGCGGTTCGGCTTCTGACC
GATCAACCAGTTCAAGCGAGATTGATATCGCTACGGTATCTCCTCGCATA
TGGAACATCGTTTCAAATGGGGATTTTCCTTTGA
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protein sequence of Gchil2273.t1

>Gchil2273.t1 ID=Gchil2273.t1|Name=Gchil2273.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=378bp
MLEPSRDSHEVSVASQEGLSPVPNDNCFDAIFLRSLVLARVFGKNIKEVS
QLTDEIIKEKLSALSSNGRAVSYDELMADVKRSISIDALEPDACLRIIGL
QTAYLDLCDRRGWDFVDTAPKAAVRQIPAVVKSPELKTRLHYALKLEESE
IEDDFFGFYKSESKISSATDKSDEHVEESVPQASSSSEKSSTIPALVVAK
LSGFKFAYRVDSGADEVAVSDTIIQFPGDKGTFLPTLQLSKAKTFKAVDV
HTFKSPGMVQLCPTITTVAGPCRLRNIKAYIMPCNDNTLLPGAYSTVEIV
LGNPFLVPSGLDVTDFLANNIYHLSSLDYGALNTVKHPVKVGKLAVRLLT
DQPVQARLISLRYLLAYGTSFQMGIFL*
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mRNA from alignment at tig00004419_pilon:521416..522904+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2273.t1 ID=Gchil2273.t1|Name=Gchil2273.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1489bp|location=Sequence derived from alignment at tig00004419_pilon:521416..522904+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGGAACCTTCTGTTAGTGTCAACCCCTTTTCTTATATTCAACATTC
TCGAATCCCGAAAATTACCCGCGAGGCTATTCAAGATTTTTTGCACAGCG
TGACTCTCATGAGGTTTCTGTTGCATCTCAAGAAGGACTATCTCCGGTTC
CGAACGACAATTGCTTTGACGCAATTTTTCTCCGCTCACTGGTTCTAGCT
CGGGTCTTTGGCAAGAACATTAAGGAAGTGAGTCAACTTACCGATGAAAT
TATTAAGGAAAAACTTTCTGCTCTTTCTTCGAATGGAAGAGCAGTTTCCT
ACGATGAACTAATGGCTGATGTTAAGCGTTCTATAAGTATAGACGCTTTG
GAGCCGGATGCTTGTCTGCGAATCATCGGATTGCAGACTGCATATCTCGA
TTTATGCGATCGTCGAGGATGGGACTTTGTTGATACAGCTCCCAAAGCTG
CAGTAAGACAAATCCCTGCTGTTGTAAAATCTCCGGAGCTTAAGACTCGA
TTACATTATGCTCTTAAGTTGGAGGAGAGTGAGATTGAAGACGACTTCTT
CGGGTTCTGTGAATTCTTGCAAGAGGAAGCAGAAATTTATGAATGCTTTC
ATTTTTTTGGAATATATCGGGCCTCACCGAGGCCGACGTCGACGAAGAAG
ATGAAAGAAACTTCAGGATCTGGTGGAGGGGCTTCTTCGTCTACTACAAC
CAAACCTAGGAGACTCCCTCCTTGTTTGAATCCGAAGTGTTCAATGCACC
ACTTTGGGAATTAATGTCCTATTACTTCAGCTGAGGAGGCTCAGAGACAT
CTGGAAGCCAGAAGATCTGAGTTCGGGAAGATAAATCTGAATCCAAGATT
TCATCCGCAACCGATAAGTCGGATGAGCATGTGGAAGAATCTGTACCCCA
AGCTTCATCATCTTCAGAGAAATCTTCTACGATACCTGCGTTGGTCGTGG
CGAAATTATCCGGTTTCAAATTCGCTTACCGCGTTGATTCCGGAGCCGAT
GAAGTGGCCGTTTCCGATACTATCATCCAATTTCCGGGTGACAAGGGTAC
GTTTCTTCCTACACTGCAGCTCAGCAAAGCTAAGACTTTTAAGGCTGTTG
ATGTGCATACCTTCAAATCTCCTGGGATGGTGCAATTGTGTCCAACTATC
ACAACTGTGGCTGGACCTTGTCGTCTCAGGAACATCAAAGCATATATTAT
GCCTTGCAATGATAATACCTTACTACCTGGTGCATACAGCACTGTTGAAA
TCGTATTAGGAAATCCTTTCTTAGTACCCTCTGGTCTCGATGTTACAGAC
TTCTTAGCGAATAACATCTACCATCTATCCTCTCTCGATTATGGTGCTTT
GAATACTGTCAAGCACCCTGTCAAAGTTGGAAAACTTGCGGTTCGGCTTC
TGACCGATCAACCAGTTCAAGCGAGATTGATATCGCTACGGTATCTCCTC
GCATATGGAACATCGTTTCAAATGGGGATTTTCCTTTGA
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Coding sequence (CDS) from alignment at tig00004419_pilon:521416..522904+

>Gchil2273.t1 ID=Gchil2273.t1|Name=Gchil2273.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1134bp|location=Sequence derived from alignment at tig00004419_pilon:521416..522904+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTGGAACCTTCTCGTGACTCTCATGAGGTTTCTGTTGCATCTCAAGA
AGGACTATCTCCGGTTCCGAACGACAATTGCTTTGACGCAATTTTTCTCC
GCTCACTGGTTCTAGCTCGGGTCTTTGGCAAGAACATTAAGGAAGTGAGT
CAACTTACCGATGAAATTATTAAGGAAAAACTTTCTGCTCTTTCTTCGAA
TGGAAGAGCAGTTTCCTACGATGAACTAATGGCTGATGTTAAGCGTTCTA
TAAGTATAGACGCTTTGGAGCCGGATGCTTGTCTGCGAATCATCGGATTG
CAGACTGCATATCTCGATTTATGCGATCGTCGAGGATGGGACTTTGTTGA
TACAGCTCCCAAAGCTGCAGTAAGACAAATCCCTGCTGTTGTAAAATCTC
CGGAGCTTAAGACTCGATTACATTATGCTCTTAAGTTGGAGGAGAGTGAG
ATTGAAGACGACTTCTTCGGGTTCTATAAATCTGAATCCAAGATTTCATC
CGCAACCGATAAGTCGGATGAGCATGTGGAAGAATCTGTACCCCAAGCTT
CATCATCTTCAGAGAAATCTTCTACGATACCTGCGTTGGTCGTGGCGAAA
TTATCCGGTTTCAAATTCGCTTACCGCGTTGATTCCGGAGCCGATGAAGT
GGCCGTTTCCGATACTATCATCCAATTTCCGGGTGACAAGGGTACGTTTC
TTCCTACACTGCAGCTCAGCAAAGCTAAGACTTTTAAGGCTGTTGATGTG
CATACCTTCAAATCTCCTGGGATGGTGCAATTGTGTCCAACTATCACAAC
TGTGGCTGGACCTTGTCGTCTCAGGAACATCAAAGCATATATTATGCCTT
GCAATGATAATACCTTACTACCTGGTGCATACAGCACTGTTGAAATCGTA
TTAGGAAATCCTTTCTTAGTACCCTCTGGTCTCGATGTTACAGACTTCTT
AGCGAATAACATCTACCATCTATCCTCTCTCGATTATGGTGCTTTGAATA
CTGTCAAGCACCCTGTCAAAGTTGGAAAACTTGCGGTTCGGCTTCTGACC
GATCAACCAGTTCAAGCGAGATTGATATCGCTACGGTATCTCCTCGCATA
TGGAACATCGTTTCAAATGGGGATTTTCCTTTGA
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