Gchil2272.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2272.t1
Unique NameGchil2272.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length222
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:515189..515933 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2272Gchil2272Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 515189..515933 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2272.t1Gchil2272.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 515189..515933 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2272.t1.stop1Gchil2272.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 515189..515191 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2272.t1.CDS1Gchil2272.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 515189..515336 -
Gchil2272.t1.CDS2Gchil2272.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 515416..515933 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2272.t1.exon1Gchil2272.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 515189..515336 -
Gchil2272.t1.exon2Gchil2272.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 515416..515933 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2272.t1.intron1Gchil2272.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 515337..515415 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2272.t1.start1Gchil2272.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 515931..515933 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2272.t1 ID=Gchil2272.t1|Name=Gchil2272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=222bp
MKRAHLLGRVYDAAFTMIVPLILFWFLLGSVAASTCSTDSPFAPEIVGRY
HHQFLPCYPTRWTTSTYVKVNATHIHYVPYRVDYNYGQFCQKYYVFRLNR
WAPMITMYPFLSMPSTNGFEVCGVEQERQKMVAWPQGSTRDQFIAGLNET
ITGLAKMRDMKCRTNAFGVHEEEGLFSSGFGVAHMREACDNRQEMGSISQ
IMQNLLHSAESQSLSPAHDWD*
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spliced messenger RNA

>Gchil2272.t1 ID=Gchil2272.t1|Name=Gchil2272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=666bp|location=Sequence derived from alignment at tig00004419_pilon:515189..515933- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGAGAGCTCATCTCCTTGGAAGGGTGTACGACGCCGCCTTCACAAT
GATTGTTCCATTAATCTTGTTCTGGTTTCTACTTGGTTCGGTGGCAGCGT
CCACTTGCTCCACCGACTCGCCGTTTGCGCCGGAAATCGTTGGGCGCTAC
CATCATCAGTTTCTACCCTGCTATCCAACTCGCTGGACAACCAGCACCTA
TGTAAAAGTCAACGCTACCCACATACACTACGTTCCATACAGGGTAGACT
ACAATTATGGTCAATTCTGTCAAAAGTACTACGTGTTCCGATTAAACCGA
TGGGCACCCATGATAACAATGTACCCGTTCTTGAGTATGCCTTCTACCAA
CGGATTTGAAGTTTGTGGGGTGGAACAGGAAAGACAAAAGATGGTGGCTT
GGCCACAGGGTTCCACTCGAGATCAGTTCATCGCTGGTTTGAACGAAACT
ATCACAGGCTTGGCCAAGATGAGGGATATGAAATGTCGAACCAATGCGTT
TGGCGTACATGAAGAGGAAGGACTATTCTCAAGTGGGTTCGGTGTCGCAC
ATATGCGCGAAGCATGTGACAATCGGCAAGAAATGGGTTCTATCTCACAG
ATCATGCAAAATCTTCTTCATTCAGCAGAATCACAATCTCTGTCCCCAGC
ACATGATTGGGATTAG
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protein sequence of Gchil2272.t1

>Gchil2272.t1 ID=Gchil2272.t1|Name=Gchil2272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=222bp
MKRAHLLGRVYDAAFTMIVPLILFWFLLGSVAASTCSTDSPFAPEIVGRY
HHQFLPCYPTRWTTSTYVKVNATHIHYVPYRVDYNYGQFCQKYYVFRLNR
WAPMITMYPFLSMPSTNGFEVCGVEQERQKMVAWPQGSTRDQFIAGLNET
ITGLAKMRDMKCRTNAFGVHEEEGLFSSGFGVAHMREACDNRQEMGSISQ
IMQNLLHSAESQSLSPAHDWD*
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mRNA from alignment at tig00004419_pilon:515189..515933-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2272.t1 ID=Gchil2272.t1|Name=Gchil2272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=745bp|location=Sequence derived from alignment at tig00004419_pilon:515189..515933- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAGAGCTCATCTCCTTGGAAGGGTGTACGACGCCGCCTTCACAAT
GATTGTTCCATTAATCTTGTTCTGGTTTCTACTTGGTTCGGTGGCAGCGT
CCACTTGCTCCACCGACTCGCCGTTTGCGCCGGAAATCGTTGGGCGCTAC
CATCATCAGTTTCTACCCTGCTATCCAACTCGCTGGACAACCAGCACCTA
TGTAAAAGTCAACGCTACCCACATACACTACGTTCCATACAGGGTAGACT
ACAATTATGGTCAATTCTGTCAAAAGTACTACGTGTTCCGATTAAACCGA
TGGGCACCCATGATAACAATGTACCCGTTCTTGAGTATGCCTTCTACCAA
CGGATTTGAAGTTTGTGGGGTGGAACAGGAAAGACAAAAGATGGTGGCTT
GGCCACAGGGTTCCACTCGAGATCAGTTCATCGCTGGTTTGAACGAAACT
ATCACAGGCTTGGCCAAGATGAGGGATATGAAATGTCGAACCAATGCGTT
TGGCGTACATGAAGAGGAGTATGTGAATCCGTGGTTGGAGGCCCCTATCT
CTTACCTGCGTTCTGTTGCCTTTAACTTTGGGATCTGTTTAGAATAGAGG
ACTATTCTCAAGTGGGTTCGGTGTCGCACATATGCGCGAAGCATGTGACA
ATCGGCAAGAAATGGGTTCTATCTCACAGATCATGCAAAATCTTCTTCAT
TCAGCAGAATCACAATCTCTGTCCCCAGCACATGATTGGGATTAG
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Coding sequence (CDS) from alignment at tig00004419_pilon:515189..515933-

>Gchil2272.t1 ID=Gchil2272.t1|Name=Gchil2272.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=666bp|location=Sequence derived from alignment at tig00004419_pilon:515189..515933- (Gracilaria chilensis NLEC103_M9 male)
ATGAAGAGAGCTCATCTCCTTGGAAGGGTGTACGACGCCGCCTTCACAAT
GATTGTTCCATTAATCTTGTTCTGGTTTCTACTTGGTTCGGTGGCAGCGT
CCACTTGCTCCACCGACTCGCCGTTTGCGCCGGAAATCGTTGGGCGCTAC
CATCATCAGTTTCTACCCTGCTATCCAACTCGCTGGACAACCAGCACCTA
TGTAAAAGTCAACGCTACCCACATACACTACGTTCCATACAGGGTAGACT
ACAATTATGGTCAATTCTGTCAAAAGTACTACGTGTTCCGATTAAACCGA
TGGGCACCCATGATAACAATGTACCCGTTCTTGAGTATGCCTTCTACCAA
CGGATTTGAAGTTTGTGGGGTGGAACAGGAAAGACAAAAGATGGTGGCTT
GGCCACAGGGTTCCACTCGAGATCAGTTCATCGCTGGTTTGAACGAAACT
ATCACAGGCTTGGCCAAGATGAGGGATATGAAATGTCGAACCAATGCGTT
TGGCGTACATGAAGAGGAAGGACTATTCTCAAGTGGGTTCGGTGTCGCAC
ATATGCGCGAAGCATGTGACAATCGGCAAGAAATGGGTTCTATCTCACAG
ATCATGCAAAATCTTCTTCATTCAGCAGAATCACAATCTCTGTCCCCAGC
ACATGATTGGGATTAG
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