Gchil2266.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2266.t1
Unique NameGchil2266.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length499
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:420490..422127 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8083.ENSXMAP00000019836
PFAMsRVT_2,Retrotran_gag_2,gag_pre-integrs,rve,zf-CCHC
Max annot lvl33208|Metazoa
Evalue3.32e-24
EggNOG OGsCOG2801@1|root,KOG0017@2759|Eukaryota,38DPC@33154|Opisthokonta,3BGB6@33208|Metazoa,3E4E9@33213|Bilateria,48KK2@7711|Chordata,49MPT@7742|Vertebrata
DescriptionReverse transcriptase (RNA-dependent DNA polymerase)
COG categoryL
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2266Gchil2266Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 420490..422127 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2266.t1Gchil2266.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 420490..422127 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2266.t1.stop1Gchil2266.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 420490..420492 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2266.t1.CDS1Gchil2266.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 420490..421542 -
Gchil2266.t1.CDS2Gchil2266.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 421684..422127 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2266.t1.exon1Gchil2266.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 420490..421542 -
Gchil2266.t1.exon2Gchil2266.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 421684..422127 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2266.t1.intron1Gchil2266.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00004419_pilon 421543..421683 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2266.t1.start1Gchil2266.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 422125..422127 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2266.t1 ID=Gchil2266.t1|Name=Gchil2266.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=499bp
MEITSHEKDDVKLYFQEFQHKEFLANHAQGLPAYVIQNAYSKEVISFKRT
IKEIHVSKIPCDANIISSHVLHKVKSLDDGLQIMKARIAPHGIKDKEIHN
LRTDCATCPPVGFRILLSFSCLFKWALVKVDVKSAFLQTGEAKRDVYVVP
QLFYIRAKDALQAIAVKLVDDIPFSGTMTALNTLLKEVGNTYKLGTIVYG
PGTFTFFGLSITQHADFTITMYGEEKLQALEACALTRMRRQQNDSPLNEL
EYSELRSLNGSLGWIGVAASPFFSLVSSVLQQKIPRPTVPDLLTQTNLLR
SLKILGSTIQFKRATDSKRYHLSLLVFADASRPSESGKLGFIAGLMIGEH
QSGSFFHTLNWSSTKSKRPVHSVGAAETLAANMGIDEGKFLTKAYSCVLK
LEVDLVVGLDYKDLYDSLSTCRSATDKSIRGDVAEIRYDFETRNISRMVW
IPGKTNLSDPLTKMDSPLDQTLQLLIFSSKLPLSFPEAQSRSSNVFLG*
back to top

spliced messenger RNA

>Gchil2266.t1 ID=Gchil2266.t1|Name=Gchil2266.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1497bp|location=Sequence derived from alignment at tig00004419_pilon:420490..422127- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAAATCACTAGCCATGAGAAGGATGATGTCAAGCTCTACTTTCAGGA
GTTCCAGCACAAAGAGTTTCTTGCCAACCATGCTCAAGGTCTACCTGCCT
ATGTCATACAAAACGCGTATTCGAAAGAAGTGATTTCATTTAAGAGAACA
ATAAAGGAAATTCATGTCTCAAAGATTCCATGCGATGCAAATATTATTTC
GAGCCATGTTTTGCACAAAGTGAAGTCTCTCGACGATGGGTTACAGATCA
TGAAGGCCAGAATTGCCCCGCATGGAATCAAGGACAAAGAGATACACAAT
CTTCGCACAGATTGTGCTACATGCCCTCCTGTTGGCTTTCGAATTTTGCT
GTCCTTTTCTTGTTTGTTCAAATGGGCCCTTGTGAAAGTCGATGTGAAAT
CCGCGTTTCTACAAACTGGTGAAGCGAAGAGGGATGTTTATGTCGTTCCT
CAACTGTTTTACATTCGCGCCAAAGATGCACTACAGGCTATTGCAGTTAA
GCTTGTCGATGACATTCCTTTTTCTGGAACAATGACGGCTCTCAACACTC
TTTTGAAGGAAGTTGGAAACACGTACAAACTAGGAACAATCGTTTACGGT
CCTGGTACGTTTACGTTTTTTGGTCTGTCAATCACGCAGCACGCAGATTT
TACGATTACTATGTATGGGGAAGAAAAACTTCAGGCTCTCGAGGCCTGTG
CGCTCACCCGTATGCGTCGTCAACAGAATGATTCCCCTCTCAATGAACTG
GAGTATTCAGAATTAAGGTCGCTGAATGGCTCTTTGGGATGGATTGGAGT
AGCTGCAAGCCCGTTCTTTTCATTGGTTTCAAGTGTTCTTCAGCAGAAAA
TCCCTCGCCCTACTGTACCTGATCTGCTCACCCAAACGAACCTGCTTCGT
TCACTGAAGATATTAGGAAGTACGATCCAGTTCAAGAGAGCAACTGATTC
AAAGCGCTACCATCTATCGTTGTTAGTGTTCGCCGATGCTAGTCGACCGT
CAGAGTCTGGAAAATTGGGATTTATTGCTGGATTAATGATTGGAGAGCAC
CAATCTGGTTCTTTCTTCCACACCCTCAACTGGTCTTCTACGAAATCCAA
AAGACCAGTTCACTCTGTTGGAGCAGCTGAGACTTTGGCAGCGAATATGG
GTATAGATGAAGGGAAGTTTTTGACGAAGGCCTACAGTTGTGTACTCAAA
CTTGAAGTAGATCTTGTTGTGGGCCTTGACTATAAGGATCTGTATGACTC
TTTGTCGACATGTCGCAGTGCTACCGACAAGAGTATCCGAGGCGATGTTG
CTGAGATACGATATGACTTTGAAACACGGAACATAAGTCGTATGGTTTGG
ATACCCGGAAAGACGAACCTTAGCGATCCATTGACAAAAATGGATAGCCC
GTTAGACCAGACTTTACAGCTTTTGATTTTCAGCAGCAAGCTTCCGCTGA
GTTTCCCGGAGGCTCAGTCGCGCAGTTCCAACGTATTCCTTGGCTAG
back to top

protein sequence of Gchil2266.t1

>Gchil2266.t1 ID=Gchil2266.t1|Name=Gchil2266.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=499bp
MEITSHEKDDVKLYFQEFQHKEFLANHAQGLPAYVIQNAYSKEVISFKRT
IKEIHVSKIPCDANIISSHVLHKVKSLDDGLQIMKARIAPHGIKDKEIHN
LRTDCATCPPVGFRILLSFSCLFKWALVKVDVKSAFLQTGEAKRDVYVVP
QLFYIRAKDALQAIAVKLVDDIPFSGTMTALNTLLKEVGNTYKLGTIVYG
PGTFTFFGLSITQHADFTITMYGEEKLQALEACALTRMRRQQNDSPLNEL
EYSELRSLNGSLGWIGVAASPFFSLVSSVLQQKIPRPTVPDLLTQTNLLR
SLKILGSTIQFKRATDSKRYHLSLLVFADASRPSESGKLGFIAGLMIGEH
QSGSFFHTLNWSSTKSKRPVHSVGAAETLAANMGIDEGKFLTKAYSCVLK
LEVDLVVGLDYKDLYDSLSTCRSATDKSIRGDVAEIRYDFETRNISRMVW
IPGKTNLSDPLTKMDSPLDQTLQLLIFSSKLPLSFPEAQSRSSNVFLG*
back to top

mRNA from alignment at tig00004419_pilon:420490..422127-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2266.t1 ID=Gchil2266.t1|Name=Gchil2266.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1638bp|location=Sequence derived from alignment at tig00004419_pilon:420490..422127- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAATCACTAGCCATGAGAAGGATGATGTCAAGCTCTACTTTCAGGA
GTTCCAGCACAAAGAGTTTCTTGCCAACCATGCTCAAGGTCTACCTGCCT
ATGTCATACAAAACGCGTATTCGAAAGAAGTGATTTCATTTAAGAGAACA
ATAAAGGAAATTCATGTCTCAAAGATTCCATGCGATGCAAATATTATTTC
GAGCCATGTTTTGCACAAAGTGAAGTCTCTCGACGATGGGTTACAGATCA
TGAAGGCCAGAATTGCCCCGCATGGAATCAAGGACAAAGAGATACACAAT
CTTCGCACAGATTGTGCTACATGCCCTCCTGTTGGCTTTCGAATTTTGCT
GTCCTTTTCTTGTTTGTTCAAATGGGCCCTTGTGAAAGTCGATGTGAAAT
CCGCGTTTCTACAAACTGGTGAAGCGAAGAGGGATGTTTATGTCGTACCT
CCGTGCGAATGCACGAGCCGATCTTTCTACTGTTTACTTTTGGCTGCTTC
TTATGGTCTCGTTACCGCTAATGCAAAGTGGCAAGAGCACAATGACACCT
TTTTCAAGGACTTGGGATTTTCGCAGCTCGCCTAGGTTCCTCAACTGTTT
TACATTCGCGCCAAAGATGCACTACAGGCTATTGCAGTTAAGCTTGTCGA
TGACATTCCTTTTTCTGGAACAATGACGGCTCTCAACACTCTTTTGAAGG
AAGTTGGAAACACGTACAAACTAGGAACAATCGTTTACGGTCCTGGTACG
TTTACGTTTTTTGGTCTGTCAATCACGCAGCACGCAGATTTTACGATTAC
TATGTATGGGGAAGAAAAACTTCAGGCTCTCGAGGCCTGTGCGCTCACCC
GTATGCGTCGTCAACAGAATGATTCCCCTCTCAATGAACTGGAGTATTCA
GAATTAAGGTCGCTGAATGGCTCTTTGGGATGGATTGGAGTAGCTGCAAG
CCCGTTCTTTTCATTGGTTTCAAGTGTTCTTCAGCAGAAAATCCCTCGCC
CTACTGTACCTGATCTGCTCACCCAAACGAACCTGCTTCGTTCACTGAAG
ATATTAGGAAGTACGATCCAGTTCAAGAGAGCAACTGATTCAAAGCGCTA
CCATCTATCGTTGTTAGTGTTCGCCGATGCTAGTCGACCGTCAGAGTCTG
GAAAATTGGGATTTATTGCTGGATTAATGATTGGAGAGCACCAATCTGGT
TCTTTCTTCCACACCCTCAACTGGTCTTCTACGAAATCCAAAAGACCAGT
TCACTCTGTTGGAGCAGCTGAGACTTTGGCAGCGAATATGGGTATAGATG
AAGGGAAGTTTTTGACGAAGGCCTACAGTTGTGTACTCAAACTTGAAGTA
GATCTTGTTGTGGGCCTTGACTATAAGGATCTGTATGACTCTTTGTCGAC
ATGTCGCAGTGCTACCGACAAGAGTATCCGAGGCGATGTTGCTGAGATAC
GATATGACTTTGAAACACGGAACATAAGTCGTATGGTTTGGATACCCGGA
AAGACGAACCTTAGCGATCCATTGACAAAAATGGATAGCCCGTTAGACCA
GACTTTACAGCTTTTGATTTTCAGCAGCAAGCTTCCGCTGAGTTTCCCGG
AGGCTCAGTCGCGCAGTTCCAACGTATTCCTTGGCTAG
back to top

Coding sequence (CDS) from alignment at tig00004419_pilon:420490..422127-

>Gchil2266.t1 ID=Gchil2266.t1|Name=Gchil2266.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1497bp|location=Sequence derived from alignment at tig00004419_pilon:420490..422127- (Gracilaria chilensis NLEC103_M9 male)
ATGGAAATCACTAGCCATGAGAAGGATGATGTCAAGCTCTACTTTCAGGA
GTTCCAGCACAAAGAGTTTCTTGCCAACCATGCTCAAGGTCTACCTGCCT
ATGTCATACAAAACGCGTATTCGAAAGAAGTGATTTCATTTAAGAGAACA
ATAAAGGAAATTCATGTCTCAAAGATTCCATGCGATGCAAATATTATTTC
GAGCCATGTTTTGCACAAAGTGAAGTCTCTCGACGATGGGTTACAGATCA
TGAAGGCCAGAATTGCCCCGCATGGAATCAAGGACAAAGAGATACACAAT
CTTCGCACAGATTGTGCTACATGCCCTCCTGTTGGCTTTCGAATTTTGCT
GTCCTTTTCTTGTTTGTTCAAATGGGCCCTTGTGAAAGTCGATGTGAAAT
CCGCGTTTCTACAAACTGGTGAAGCGAAGAGGGATGTTTATGTCGTTCCT
CAACTGTTTTACATTCGCGCCAAAGATGCACTACAGGCTATTGCAGTTAA
GCTTGTCGATGACATTCCTTTTTCTGGAACAATGACGGCTCTCAACACTC
TTTTGAAGGAAGTTGGAAACACGTACAAACTAGGAACAATCGTTTACGGT
CCTGGTACGTTTACGTTTTTTGGTCTGTCAATCACGCAGCACGCAGATTT
TACGATTACTATGTATGGGGAAGAAAAACTTCAGGCTCTCGAGGCCTGTG
CGCTCACCCGTATGCGTCGTCAACAGAATGATTCCCCTCTCAATGAACTG
GAGTATTCAGAATTAAGGTCGCTGAATGGCTCTTTGGGATGGATTGGAGT
AGCTGCAAGCCCGTTCTTTTCATTGGTTTCAAGTGTTCTTCAGCAGAAAA
TCCCTCGCCCTACTGTACCTGATCTGCTCACCCAAACGAACCTGCTTCGT
TCACTGAAGATATTAGGAAGTACGATCCAGTTCAAGAGAGCAACTGATTC
AAAGCGCTACCATCTATCGTTGTTAGTGTTCGCCGATGCTAGTCGACCGT
CAGAGTCTGGAAAATTGGGATTTATTGCTGGATTAATGATTGGAGAGCAC
CAATCTGGTTCTTTCTTCCACACCCTCAACTGGTCTTCTACGAAATCCAA
AAGACCAGTTCACTCTGTTGGAGCAGCTGAGACTTTGGCAGCGAATATGG
GTATAGATGAAGGGAAGTTTTTGACGAAGGCCTACAGTTGTGTACTCAAA
CTTGAAGTAGATCTTGTTGTGGGCCTTGACTATAAGGATCTGTATGACTC
TTTGTCGACATGTCGCAGTGCTACCGACAAGAGTATCCGAGGCGATGTTG
CTGAGATACGATATGACTTTGAAACACGGAACATAAGTCGTATGGTTTGG
ATACCCGGAAAGACGAACCTTAGCGATCCATTGACAAAAATGGATAGCCC
GTTAGACCAGACTTTACAGCTTTTGATTTTCAGCAGCAAGCTTCCGCTGA
GTTTCCCGGAGGCTCAGTCGCGCAGTTCCAACGTATTCCTTGGCTAG
back to top