Gchil2260.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2260.t1
Unique NameGchil2260.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00004419_piloncontigtig00004419_pilon:104455..105048 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2260Gchil2260Gracilaria chilensis NLEC103_M9 malegenetig00004419_pilon 104455..105048 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2260.t1.start1Gchil2260.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00004419_pilon 104455..104457 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2260.t1.CDS1Gchil2260.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00004419_pilon 104455..105048 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2260.t1.exon1Gchil2260.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00004419_pilon 104455..105048 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2260.t1.stop1Gchil2260.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00004419_pilon 105046..105048 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2260.t1Gchil2260.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00004419_pilon 104455..105048 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2260.t1 ID=Gchil2260.t1|Name=Gchil2260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=198bp
MPKQRNKGDYVLFLESWRETVTGEAEMLTVVGDSTASMDESLEAVLEGSH
HHWESAPILIVFYASNDSVITANLSSILHLCDAKDINLCVDGPGLEFIAQ
ATRPSDPNECLQNADVLLTNPGSGFGFDDCAFISIHSQPPCPPFRNRAYV
LVPQVTTITTKYIANIRGKKSQSPVSLNCGRQSLKSACRELERKLMK*
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spliced messenger RNA

>Gchil2260.t1 ID=Gchil2260.t1|Name=Gchil2260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00004419_pilon:104455..105048+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCAAAGCAAAGGAACAAAGGCGACTATGTTCTCTTTCTCGAGTCGTG
GAGAGAAACCGTCACTGGGGAGGCGGAAATGCTCACTGTCGTTGGGGATT
CTACTGCCAGTATGGATGAATCTTTGGAAGCTGTGCTAGAAGGATCCCAC
CATCATTGGGAATCTGCGCCGATTCTTATAGTATTTTACGCCTCAAATGA
TTCAGTTATAACTGCAAACTTGTCTTCTATTCTCCATTTATGCGACGCGA
AAGACATCAACCTATGTGTCGACGGACCAGGACTTGAATTTATTGCCCAG
GCCACTCGACCATCAGATCCGAACGAGTGTTTGCAGAATGCCGACGTTCT
GCTCACGAATCCAGGCTCTGGGTTTGGGTTCGATGACTGCGCTTTCATTA
GTATTCACTCTCAGCCCCCCTGCCCGCCATTTCGCAACCGCGCTTATGTA
CTTGTTCCACAGGTCACAACAATTACAACCAAGTACATCGCGAATATCAG
AGGAAAGAAATCGCAGTCGCCTGTGTCACTAAATTGTGGACGGCAATCTC
TCAAATCGGCGTGCCGAGAATTAGAGAGAAAGTTGATGAAGTAA
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protein sequence of Gchil2260.t1

>Gchil2260.t1 ID=Gchil2260.t1|Name=Gchil2260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=198bp
MPKQRNKGDYVLFLESWRETVTGEAEMLTVVGDSTASMDESLEAVLEGSH
HHWESAPILIVFYASNDSVITANLSSILHLCDAKDINLCVDGPGLEFIAQ
ATRPSDPNECLQNADVLLTNPGSGFGFDDCAFISIHSQPPCPPFRNRAYV
LVPQVTTITTKYIANIRGKKSQSPVSLNCGRQSLKSACRELERKLMK*
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mRNA from alignment at tig00004419_pilon:104455..105048+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2260.t1 ID=Gchil2260.t1|Name=Gchil2260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00004419_pilon:104455..105048+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCAAAGCAAAGGAACAAAGGCGACTATGTTCTCTTTCTCGAGTCGTG
GAGAGAAACCGTCACTGGGGAGGCGGAAATGCTCACTGTCGTTGGGGATT
CTACTGCCAGTATGGATGAATCTTTGGAAGCTGTGCTAGAAGGATCCCAC
CATCATTGGGAATCTGCGCCGATTCTTATAGTATTTTACGCCTCAAATGA
TTCAGTTATAACTGCAAACTTGTCTTCTATTCTCCATTTATGCGACGCGA
AAGACATCAACCTATGTGTCGACGGACCAGGACTTGAATTTATTGCCCAG
GCCACTCGACCATCAGATCCGAACGAGTGTTTGCAGAATGCCGACGTTCT
GCTCACGAATCCAGGCTCTGGGTTTGGGTTCGATGACTGCGCTTTCATTA
GTATTCACTCTCAGCCCCCCTGCCCGCCATTTCGCAACCGCGCTTATGTA
CTTGTTCCACAGGTCACAACAATTACAACCAAGTACATCGCGAATATCAG
AGGAAAGAAATCGCAGTCGCCTGTGTCACTAAATTGTGGACGGCAATCTC
TCAAATCGGCGTGCCGAGAATTAGAGAGAAAGTTGATGAAGTAA
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Coding sequence (CDS) from alignment at tig00004419_pilon:104455..105048+

>Gchil2260.t1 ID=Gchil2260.t1|Name=Gchil2260.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00004419_pilon:104455..105048+ (Gracilaria chilensis NLEC103_M9 male)
ATGCCAAAGCAAAGGAACAAAGGCGACTATGTTCTCTTTCTCGAGTCGTG
GAGAGAAACCGTCACTGGGGAGGCGGAAATGCTCACTGTCGTTGGGGATT
CTACTGCCAGTATGGATGAATCTTTGGAAGCTGTGCTAGAAGGATCCCAC
CATCATTGGGAATCTGCGCCGATTCTTATAGTATTTTACGCCTCAAATGA
TTCAGTTATAACTGCAAACTTGTCTTCTATTCTCCATTTATGCGACGCGA
AAGACATCAACCTATGTGTCGACGGACCAGGACTTGAATTTATTGCCCAG
GCCACTCGACCATCAGATCCGAACGAGTGTTTGCAGAATGCCGACGTTCT
GCTCACGAATCCAGGCTCTGGGTTTGGGTTCGATGACTGCGCTTTCATTA
GTATTCACTCTCAGCCCCCCTGCCCGCCATTTCGCAACCGCGCTTATGTA
CTTGTTCCACAGGTCACAACAATTACAACCAAGTACATCGCGAATATCAG
AGGAAAGAAATCGCAGTCGCCTGTGTCACTAAATTGTGGACGGCAATCTC
TCAAATCGGCGTGCCGAGAATTAGAGAGAAAGTTGATGAAGTAA
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