Gchil2245.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2245.t1
Unique NameGchil2245.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length511
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:509862..511394 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3641.EOY09063
Preferred nameGLDH
PFAMsALO,FAD_binding_4
Max annot lvl35493|Streptophyta
KEGG rclassRC00092,RC00195
KEGG koko:K00225
KEGG ReactionR00640,R07679
KEGG Pathwayko00053,ko01100,ko01110,map00053,map01100,map01110
KEGG ModuleM00114
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0008150,GO:0008152,GO:0009536,GO:0016491,GO:0016627,GO:0016632,GO:0016633,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0055114,GO:0080049
Evalue4.95e-168
EggNOG OGsCOG0277@1|root,KOG4730@2759|Eukaryota,37JSI@33090|Viridiplantae,3GBA2@35493|Streptophyta
EC1.3.2.3
DescriptionL-galactono-1,4-lactone dehydrogenase
COG categoryV
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2245Gchil2245Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 509862..511394 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2245.t1.stop1Gchil2245.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 509862..509864 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2245.t1.CDS1Gchil2245.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 509862..511394 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2245.t1.exon1Gchil2245.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 509862..511394 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2245.t1.start1Gchil2245.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 511392..511394 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2245.t1Gchil2245.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 509862..511394 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2245.t1 ID=Gchil2245.t1|Name=Gchil2245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=511bp
MQSGVEDDSEQPGIQFEPQDLVNWSGTHSVSTKRYFTPETEMELAQIVKQ
SHDSKQKLRPVGSALSPNGLGFESGGMVNLVHMDKILKVDTETMRVTVQA
GASVNKVVEELRRYGLTLQNFASITEQQIGGFIQVGAHGTGARIPPVDEQ
VVGLRIVTPGAGILSLSADDDDPSLFQVARTAMGMFGIVSEVTLQCVPVH
RLVEHTFVLSPKEIMEHHTELLETNRHLRYMWIPYTDAVVVVTCNPFTRE
TSTQGPIQSQFERTVEARQLLKSHPRCSLTGEQVDGLSFTTIRDELLNLD
PLNVDWIRKVNAAEASFWRKSQGVRIDWSDRILQFDCGGQQWVSEVAFPV
PKDSGDPIDVKYVYNLLDLIEKENVPAPSPIEQRWTAPSQSPMSPAAEKP
GKALGDIYSWVGIIMYLPDADVDPKSWKEITDSFSKYKALCAENLWPDVG
AVEHWAKIEMPQAIEEKEMLRARTHQKFPVQAFVAICDIMDPYGILRNEL
MDSILGENAM*
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spliced messenger RNA

>Gchil2245.t1 ID=Gchil2245.t1|Name=Gchil2245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00000228_pilon:509862..511394- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAATCAGGTGTTGAGGACGATTCGGAACAACCAGGAATTCAGTTCGA
ACCTCAAGACCTGGTGAACTGGTCTGGAACCCACTCTGTTTCCACAAAGC
GGTACTTCACGCCTGAGACAGAAATGGAACTGGCTCAAATAGTGAAACAA
TCTCACGATAGCAAGCAAAAATTGAGGCCTGTAGGGTCGGCTCTTTCTCC
AAATGGACTGGGATTTGAAAGTGGCGGAATGGTCAACCTAGTTCACATGG
ATAAAATTTTAAAGGTGGACACCGAAACGATGCGTGTTACAGTGCAAGCG
GGAGCTTCCGTGAACAAAGTCGTAGAAGAATTGCGAAGATACGGACTCAC
TCTTCAAAATTTTGCTTCCATCACCGAACAACAAATAGGTGGCTTTATTC
AAGTTGGAGCTCATGGGACTGGTGCCCGTATTCCTCCAGTCGATGAACAG
GTGGTCGGTCTTCGGATTGTCACCCCAGGAGCTGGGATTTTGAGTTTGTC
CGCGGATGATGATGATCCCAGCTTATTCCAAGTTGCTCGAACAGCGATGG
GTATGTTTGGGATCGTATCTGAGGTCACGCTCCAATGTGTACCCGTGCAT
CGACTAGTTGAGCATACTTTTGTTTTGTCACCCAAGGAGATCATGGAGCA
TCATACGGAGCTTTTGGAGACGAACCGACATTTGCGATATATGTGGATTC
CGTACACTGATGCCGTTGTGGTCGTAACCTGCAACCCATTCACGCGTGAG
ACGAGTACGCAAGGCCCCATTCAAAGCCAGTTCGAACGCACTGTTGAAGC
GAGACAGTTGCTCAAGTCACACCCTCGGTGCTCACTCACTGGTGAACAAG
TAGATGGACTTTCTTTCACGACAATTCGTGATGAGCTGCTTAATCTCGAC
CCTCTCAATGTAGATTGGATTCGAAAAGTAAATGCAGCTGAGGCTTCATT
CTGGCGGAAGTCCCAAGGTGTTCGGATTGACTGGTCTGATAGGATTCTTC
AATTTGATTGCGGTGGACAACAGTGGGTGTCGGAGGTTGCCTTTCCAGTG
CCGAAAGATTCCGGAGATCCTATCGATGTCAAATACGTCTACAACCTGCT
CGACCTCATTGAAAAGGAAAACGTACCTGCTCCGTCCCCAATTGAACAGC
GCTGGACAGCTCCAAGTCAGTCTCCAATGTCACCTGCGGCTGAAAAACCT
GGGAAAGCGCTTGGTGATATTTACTCATGGGTAGGAATAATCATGTACCT
ACCAGACGCTGATGTCGATCCGAAATCATGGAAAGAAATAACGGATTCGT
TCAGCAAGTATAAAGCCCTATGTGCAGAGAATCTCTGGCCGGATGTAGGA
GCAGTTGAACATTGGGCCAAGATTGAAATGCCCCAGGCAATTGAAGAAAA
GGAAATGCTGAGGGCGCGAACTCATCAAAAGTTCCCGGTGCAGGCATTCG
TAGCGATTTGCGATATCATGGATCCTTATGGCATACTAAGAAATGAACTC
ATGGATTCCATTCTTGGTGAGAACGCCATGTGA
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protein sequence of Gchil2245.t1

>Gchil2245.t1 ID=Gchil2245.t1|Name=Gchil2245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=511bp
MQSGVEDDSEQPGIQFEPQDLVNWSGTHSVSTKRYFTPETEMELAQIVKQ
SHDSKQKLRPVGSALSPNGLGFESGGMVNLVHMDKILKVDTETMRVTVQA
GASVNKVVEELRRYGLTLQNFASITEQQIGGFIQVGAHGTGARIPPVDEQ
VVGLRIVTPGAGILSLSADDDDPSLFQVARTAMGMFGIVSEVTLQCVPVH
RLVEHTFVLSPKEIMEHHTELLETNRHLRYMWIPYTDAVVVVTCNPFTRE
TSTQGPIQSQFERTVEARQLLKSHPRCSLTGEQVDGLSFTTIRDELLNLD
PLNVDWIRKVNAAEASFWRKSQGVRIDWSDRILQFDCGGQQWVSEVAFPV
PKDSGDPIDVKYVYNLLDLIEKENVPAPSPIEQRWTAPSQSPMSPAAEKP
GKALGDIYSWVGIIMYLPDADVDPKSWKEITDSFSKYKALCAENLWPDVG
AVEHWAKIEMPQAIEEKEMLRARTHQKFPVQAFVAICDIMDPYGILRNEL
MDSILGENAM*
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mRNA from alignment at tig00000228_pilon:509862..511394-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2245.t1 ID=Gchil2245.t1|Name=Gchil2245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1533bp|location=Sequence derived from alignment at tig00000228_pilon:509862..511394- (Gracilaria chilensis NLEC103_M9 male)
ATGCAATCAGGTGTTGAGGACGATTCGGAACAACCAGGAATTCAGTTCGA
ACCTCAAGACCTGGTGAACTGGTCTGGAACCCACTCTGTTTCCACAAAGC
GGTACTTCACGCCTGAGACAGAAATGGAACTGGCTCAAATAGTGAAACAA
TCTCACGATAGCAAGCAAAAATTGAGGCCTGTAGGGTCGGCTCTTTCTCC
AAATGGACTGGGATTTGAAAGTGGCGGAATGGTCAACCTAGTTCACATGG
ATAAAATTTTAAAGGTGGACACCGAAACGATGCGTGTTACAGTGCAAGCG
GGAGCTTCCGTGAACAAAGTCGTAGAAGAATTGCGAAGATACGGACTCAC
TCTTCAAAATTTTGCTTCCATCACCGAACAACAAATAGGTGGCTTTATTC
AAGTTGGAGCTCATGGGACTGGTGCCCGTATTCCTCCAGTCGATGAACAG
GTGGTCGGTCTTCGGATTGTCACCCCAGGAGCTGGGATTTTGAGTTTGTC
CGCGGATGATGATGATCCCAGCTTATTCCAAGTTGCTCGAACAGCGATGG
GTATGTTTGGGATCGTATCTGAGGTCACGCTCCAATGTGTACCCGTGCAT
CGACTAGTTGAGCATACTTTTGTTTTGTCACCCAAGGAGATCATGGAGCA
TCATACGGAGCTTTTGGAGACGAACCGACATTTGCGATATATGTGGATTC
CGTACACTGATGCCGTTGTGGTCGTAACCTGCAACCCATTCACGCGTGAG
ACGAGTACGCAAGGCCCCATTCAAAGCCAGTTCGAACGCACTGTTGAAGC
GAGACAGTTGCTCAAGTCACACCCTCGGTGCTCACTCACTGGTGAACAAG
TAGATGGACTTTCTTTCACGACAATTCGTGATGAGCTGCTTAATCTCGAC
CCTCTCAATGTAGATTGGATTCGAAAAGTAAATGCAGCTGAGGCTTCATT
CTGGCGGAAGTCCCAAGGTGTTCGGATTGACTGGTCTGATAGGATTCTTC
AATTTGATTGCGGTGGACAACAGTGGGTGTCGGAGGTTGCCTTTCCAGTG
CCGAAAGATTCCGGAGATCCTATCGATGTCAAATACGTCTACAACCTGCT
CGACCTCATTGAAAAGGAAAACGTACCTGCTCCGTCCCCAATTGAACAGC
GCTGGACAGCTCCAAGTCAGTCTCCAATGTCACCTGCGGCTGAAAAACCT
GGGAAAGCGCTTGGTGATATTTACTCATGGGTAGGAATAATCATGTACCT
ACCAGACGCTGATGTCGATCCGAAATCATGGAAAGAAATAACGGATTCGT
TCAGCAAGTATAAAGCCCTATGTGCAGAGAATCTCTGGCCGGATGTAGGA
GCAGTTGAACATTGGGCCAAGATTGAAATGCCCCAGGCAATTGAAGAAAA
GGAAATGCTGAGGGCGCGAACTCATCAAAAGTTCCCGGTGCAGGCATTCG
TAGCGATTTGCGATATCATGGATCCTTATGGCATACTAAGAAATGAACTC
ATGGATTCCATTCTTGGTGAGAACGCCATGTGA
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Coding sequence (CDS) from alignment at tig00000228_pilon:509862..511394-

>Gchil2245.t1 ID=Gchil2245.t1|Name=Gchil2245.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1533bp|location=Sequence derived from alignment at tig00000228_pilon:509862..511394- (Gracilaria chilensis NLEC103_M9 male)
ATGCAATCAGGTGTTGAGGACGATTCGGAACAACCAGGAATTCAGTTCGA
ACCTCAAGACCTGGTGAACTGGTCTGGAACCCACTCTGTTTCCACAAAGC
GGTACTTCACGCCTGAGACAGAAATGGAACTGGCTCAAATAGTGAAACAA
TCTCACGATAGCAAGCAAAAATTGAGGCCTGTAGGGTCGGCTCTTTCTCC
AAATGGACTGGGATTTGAAAGTGGCGGAATGGTCAACCTAGTTCACATGG
ATAAAATTTTAAAGGTGGACACCGAAACGATGCGTGTTACAGTGCAAGCG
GGAGCTTCCGTGAACAAAGTCGTAGAAGAATTGCGAAGATACGGACTCAC
TCTTCAAAATTTTGCTTCCATCACCGAACAACAAATAGGTGGCTTTATTC
AAGTTGGAGCTCATGGGACTGGTGCCCGTATTCCTCCAGTCGATGAACAG
GTGGTCGGTCTTCGGATTGTCACCCCAGGAGCTGGGATTTTGAGTTTGTC
CGCGGATGATGATGATCCCAGCTTATTCCAAGTTGCTCGAACAGCGATGG
GTATGTTTGGGATCGTATCTGAGGTCACGCTCCAATGTGTACCCGTGCAT
CGACTAGTTGAGCATACTTTTGTTTTGTCACCCAAGGAGATCATGGAGCA
TCATACGGAGCTTTTGGAGACGAACCGACATTTGCGATATATGTGGATTC
CGTACACTGATGCCGTTGTGGTCGTAACCTGCAACCCATTCACGCGTGAG
ACGAGTACGCAAGGCCCCATTCAAAGCCAGTTCGAACGCACTGTTGAAGC
GAGACAGTTGCTCAAGTCACACCCTCGGTGCTCACTCACTGGTGAACAAG
TAGATGGACTTTCTTTCACGACAATTCGTGATGAGCTGCTTAATCTCGAC
CCTCTCAATGTAGATTGGATTCGAAAAGTAAATGCAGCTGAGGCTTCATT
CTGGCGGAAGTCCCAAGGTGTTCGGATTGACTGGTCTGATAGGATTCTTC
AATTTGATTGCGGTGGACAACAGTGGGTGTCGGAGGTTGCCTTTCCAGTG
CCGAAAGATTCCGGAGATCCTATCGATGTCAAATACGTCTACAACCTGCT
CGACCTCATTGAAAAGGAAAACGTACCTGCTCCGTCCCCAATTGAACAGC
GCTGGACAGCTCCAAGTCAGTCTCCAATGTCACCTGCGGCTGAAAAACCT
GGGAAAGCGCTTGGTGATATTTACTCATGGGTAGGAATAATCATGTACCT
ACCAGACGCTGATGTCGATCCGAAATCATGGAAAGAAATAACGGATTCGT
TCAGCAAGTATAAAGCCCTATGTGCAGAGAATCTCTGGCCGGATGTAGGA
GCAGTTGAACATTGGGCCAAGATTGAAATGCCCCAGGCAATTGAAGAAAA
GGAAATGCTGAGGGCGCGAACTCATCAAAAGTTCCCGGTGCAGGCATTCG
TAGCGATTTGCGATATCATGGATCCTTATGGCATACTAAGAAATGAACTC
ATGGATTCCATTCTTGGTGAGAACGCCATGTGA
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