Gchil2240.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2240.t1
Unique NameGchil2240.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length410
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:469747..470976 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2240Gchil2240Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 469747..470976 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2240.t1.stop1Gchil2240.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 469747..469749 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2240.t1.CDS1Gchil2240.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 469747..470976 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2240.t1.exon1Gchil2240.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 469747..470976 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2240.t1.start1Gchil2240.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 470974..470976 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2240.t1Gchil2240.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 469747..470976 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2240.t1 ID=Gchil2240.t1|Name=Gchil2240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=410bp
MQRHPAANAHLPYSKWSQHRAENGLIYLSHPVTSEVKWLWSRHTDPKTSN
DYLVNTISGERQWVTENNQHLCPVSSDKSTNQEHTKNAAAANGSTNPFAA
EKRAQPKKPANPGKPQHFGESAKYREIAAPKSLGLTADEVLMLVPETGRR
YIFNKKTNSSRWLPDRPPDTIPSALAQRTFLGRAKSKSSASIDNDIHPDL
REMTKAPFFDPEAPPIHDHNASPASTAHRIPVPRAVDNNSTNIPTNQQST
KASPTPQHFRTANTPSTASSSPNPDKKFASQSNLPTSSGKPGARRGVSPH
LEKNENPATEKLSALGSIIDNVNKITASGRYDINQLRCLATMRGKEDEVQ
DGSRRLLELEEYLTQQMLKVDAVESEGNQLVRVKRKETVNTILGLTDEIE
QLRTKLKNL*
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spliced messenger RNA

>Gchil2240.t1 ID=Gchil2240.t1|Name=Gchil2240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000228_pilon:469747..470976- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAAAGACATCCTGCAGCTAACGCTCACCTCCCATACTCCAAGTGGTC
TCAACACCGGGCCGAAAACGGGCTCATCTACCTCTCGCACCCAGTTACCA
GCGAAGTAAAATGGCTATGGTCCCGCCACACTGATCCGAAGACCTCCAAT
GACTACCTCGTCAATACCATCTCCGGCGAGCGACAATGGGTGACTGAGAA
CAATCAACATCTCTGTCCCGTTTCGTCCGACAAATCTACCAATCAAGAGC
ACACCAAGAATGCCGCTGCTGCCAACGGCTCCACCAATCCCTTTGCAGCA
GAAAAGCGTGCGCAGCCGAAGAAACCTGCAAACCCAGGCAAGCCACAACA
CTTTGGCGAAAGTGCCAAATACCGCGAGATAGCCGCGCCCAAATCACTCG
GCCTCACCGCTGACGAGGTGCTCATGCTTGTTCCCGAAACCGGCCGACGA
TACATTTTCAACAAGAAGACCAACAGTTCACGATGGCTGCCCGACAGACC
GCCGGACACCATTCCAAGCGCTCTGGCGCAACGAACATTCCTGGGGCGCG
CCAAATCTAAGTCATCCGCCAGCATTGACAACGATATTCACCCGGACCTA
CGAGAAATGACAAAAGCTCCGTTTTTTGACCCTGAAGCCCCCCCGATTCA
CGACCATAACGCGTCTCCCGCATCCACGGCCCATCGCATCCCCGTACCCC
GCGCCGTTGACAATAACTCCACTAATATCCCTACAAACCAGCAATCAACC
AAAGCCTCCCCTACGCCTCAGCACTTTCGAACTGCTAATACGCCCAGCAC
GGCATCGTCGAGCCCAAATCCTGACAAAAAATTCGCGAGTCAATCAAATC
TCCCAACCTCTTCAGGGAAGCCCGGTGCGAGAAGAGGTGTCTCACCTCAT
CTTGAAAAAAATGAGAACCCGGCAACGGAAAAGCTCAGTGCCTTAGGATC
CATTATTGACAACGTGAACAAGATCACTGCCTCTGGTAGATATGATATCA
ATCAATTGCGCTGCCTGGCTACGATGCGGGGGAAGGAAGATGAAGTTCAA
GATGGATCTCGACGTCTCCTTGAGTTAGAAGAATATCTCACACAGCAAAT
GCTCAAAGTTGATGCCGTCGAAAGCGAAGGCAATCAGTTGGTTCGAGTGA
AGAGAAAAGAAACTGTCAATACTATACTAGGACTGACCGATGAGATTGAG
CAGCTCAGAACAAAGTTAAAGAATTTGTGA
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protein sequence of Gchil2240.t1

>Gchil2240.t1 ID=Gchil2240.t1|Name=Gchil2240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=410bp
MQRHPAANAHLPYSKWSQHRAENGLIYLSHPVTSEVKWLWSRHTDPKTSN
DYLVNTISGERQWVTENNQHLCPVSSDKSTNQEHTKNAAAANGSTNPFAA
EKRAQPKKPANPGKPQHFGESAKYREIAAPKSLGLTADEVLMLVPETGRR
YIFNKKTNSSRWLPDRPPDTIPSALAQRTFLGRAKSKSSASIDNDIHPDL
REMTKAPFFDPEAPPIHDHNASPASTAHRIPVPRAVDNNSTNIPTNQQST
KASPTPQHFRTANTPSTASSSPNPDKKFASQSNLPTSSGKPGARRGVSPH
LEKNENPATEKLSALGSIIDNVNKITASGRYDINQLRCLATMRGKEDEVQ
DGSRRLLELEEYLTQQMLKVDAVESEGNQLVRVKRKETVNTILGLTDEIE
QLRTKLKNL*
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mRNA from alignment at tig00000228_pilon:469747..470976-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2240.t1 ID=Gchil2240.t1|Name=Gchil2240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1230bp|location=Sequence derived from alignment at tig00000228_pilon:469747..470976- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAGACATCCTGCAGCTAACGCTCACCTCCCATACTCCAAGTGGTC
TCAACACCGGGCCGAAAACGGGCTCATCTACCTCTCGCACCCAGTTACCA
GCGAAGTAAAATGGCTATGGTCCCGCCACACTGATCCGAAGACCTCCAAT
GACTACCTCGTCAATACCATCTCCGGCGAGCGACAATGGGTGACTGAGAA
CAATCAACATCTCTGTCCCGTTTCGTCCGACAAATCTACCAATCAAGAGC
ACACCAAGAATGCCGCTGCTGCCAACGGCTCCACCAATCCCTTTGCAGCA
GAAAAGCGTGCGCAGCCGAAGAAACCTGCAAACCCAGGCAAGCCACAACA
CTTTGGCGAAAGTGCCAAATACCGCGAGATAGCCGCGCCCAAATCACTCG
GCCTCACCGCTGACGAGGTGCTCATGCTTGTTCCCGAAACCGGCCGACGA
TACATTTTCAACAAGAAGACCAACAGTTCACGATGGCTGCCCGACAGACC
GCCGGACACCATTCCAAGCGCTCTGGCGCAACGAACATTCCTGGGGCGCG
CCAAATCTAAGTCATCCGCCAGCATTGACAACGATATTCACCCGGACCTA
CGAGAAATGACAAAAGCTCCGTTTTTTGACCCTGAAGCCCCCCCGATTCA
CGACCATAACGCGTCTCCCGCATCCACGGCCCATCGCATCCCCGTACCCC
GCGCCGTTGACAATAACTCCACTAATATCCCTACAAACCAGCAATCAACC
AAAGCCTCCCCTACGCCTCAGCACTTTCGAACTGCTAATACGCCCAGCAC
GGCATCGTCGAGCCCAAATCCTGACAAAAAATTCGCGAGTCAATCAAATC
TCCCAACCTCTTCAGGGAAGCCCGGTGCGAGAAGAGGTGTCTCACCTCAT
CTTGAAAAAAATGAGAACCCGGCAACGGAAAAGCTCAGTGCCTTAGGATC
CATTATTGACAACGTGAACAAGATCACTGCCTCTGGTAGATATGATATCA
ATCAATTGCGCTGCCTGGCTACGATGCGGGGGAAGGAAGATGAAGTTCAA
GATGGATCTCGACGTCTCCTTGAGTTAGAAGAATATCTCACACAGCAAAT
GCTCAAAGTTGATGCCGTCGAAAGCGAAGGCAATCAGTTGGTTCGAGTGA
AGAGAAAAGAAACTGTCAATACTATACTAGGACTGACCGATGAGATTGAG
CAGCTCAGAACAAAGTTAAAGAATTTGTGA
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Coding sequence (CDS) from alignment at tig00000228_pilon:469747..470976-

>Gchil2240.t1 ID=Gchil2240.t1|Name=Gchil2240.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1230bp|location=Sequence derived from alignment at tig00000228_pilon:469747..470976- (Gracilaria chilensis NLEC103_M9 male)
ATGCAAAGACATCCTGCAGCTAACGCTCACCTCCCATACTCCAAGTGGTC
TCAACACCGGGCCGAAAACGGGCTCATCTACCTCTCGCACCCAGTTACCA
GCGAAGTAAAATGGCTATGGTCCCGCCACACTGATCCGAAGACCTCCAAT
GACTACCTCGTCAATACCATCTCCGGCGAGCGACAATGGGTGACTGAGAA
CAATCAACATCTCTGTCCCGTTTCGTCCGACAAATCTACCAATCAAGAGC
ACACCAAGAATGCCGCTGCTGCCAACGGCTCCACCAATCCCTTTGCAGCA
GAAAAGCGTGCGCAGCCGAAGAAACCTGCAAACCCAGGCAAGCCACAACA
CTTTGGCGAAAGTGCCAAATACCGCGAGATAGCCGCGCCCAAATCACTCG
GCCTCACCGCTGACGAGGTGCTCATGCTTGTTCCCGAAACCGGCCGACGA
TACATTTTCAACAAGAAGACCAACAGTTCACGATGGCTGCCCGACAGACC
GCCGGACACCATTCCAAGCGCTCTGGCGCAACGAACATTCCTGGGGCGCG
CCAAATCTAAGTCATCCGCCAGCATTGACAACGATATTCACCCGGACCTA
CGAGAAATGACAAAAGCTCCGTTTTTTGACCCTGAAGCCCCCCCGATTCA
CGACCATAACGCGTCTCCCGCATCCACGGCCCATCGCATCCCCGTACCCC
GCGCCGTTGACAATAACTCCACTAATATCCCTACAAACCAGCAATCAACC
AAAGCCTCCCCTACGCCTCAGCACTTTCGAACTGCTAATACGCCCAGCAC
GGCATCGTCGAGCCCAAATCCTGACAAAAAATTCGCGAGTCAATCAAATC
TCCCAACCTCTTCAGGGAAGCCCGGTGCGAGAAGAGGTGTCTCACCTCAT
CTTGAAAAAAATGAGAACCCGGCAACGGAAAAGCTCAGTGCCTTAGGATC
CATTATTGACAACGTGAACAAGATCACTGCCTCTGGTAGATATGATATCA
ATCAATTGCGCTGCCTGGCTACGATGCGGGGGAAGGAAGATGAAGTTCAA
GATGGATCTCGACGTCTCCTTGAGTTAGAAGAATATCTCACACAGCAAAT
GCTCAAAGTTGATGCCGTCGAAAGCGAAGGCAATCAGTTGGTTCGAGTGA
AGAGAAAAGAAACTGTCAATACTATACTAGGACTGACCGATGAGATTGAG
CAGCTCAGAACAAAGTTAAAGAATTTGTGA
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