Gchil2232.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2232.t1
Unique NameGchil2232.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length364
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:407570..408807 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog72019.SARC_04198T0
Preferred nameAOX2
PFAMsAOX
Max annot lvl33154|Opisthokonta
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0016020,GO:0019866,GO:0031090,GO:0031966,GO:0031967,GO:0031975,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044429,GO:0044444,GO:0044446,GO:0044464
Evalue9.63e-82
EggNOG OGs28JWX@1|root,2QSB5@2759|Eukaryota,38J5S@33154|Opisthokonta
Descriptionalternative oxidase activity
COG categoryQ
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2232Gchil2232Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 407570..408807 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2232.t1Gchil2232.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 407570..408807 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2232.t1.start1Gchil2232.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 407570..407572 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2232.t1.CDS1Gchil2232.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 407570..407890 +
Gchil2232.t1.CDS2Gchil2232.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 407965..408280 +
Gchil2232.t1.CDS3Gchil2232.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 408353..408807 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2232.t1.exon1Gchil2232.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 407570..407890 +
Gchil2232.t1.exon2Gchil2232.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 407965..408280 +
Gchil2232.t1.exon3Gchil2232.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 408353..408807 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2232.t1.intron1Gchil2232.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 407891..407964 +
Gchil2232.t1.intron2Gchil2232.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 408281..408352 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2232.t1.stop1Gchil2232.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 408805..408807 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2232.t1 ID=Gchil2232.t1|Name=Gchil2232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=364bp
MASGYSLVNAFKHFPRALMHVEHGGSQSIPFAIRKFRLGNGSTVQSFRSL
TFKPRAGQSISSLHRSMEKSFIPPILSHQLCTKLHAGVSSGQNGDGAIKT
RYDWIDKEATELIGKAYKRHKALADKSESFPPSLSVQDLERIGTPVHYAP
KDFVDRVALNAMKILRVFVHAFFREKYDHHAVCLETVAAIPGLVGSFHRH
LRSLRRMKRDHGWISVMQEEAENERMHLLIFMKITHPSALERGLVILAQG
LYLTFYSGLYLFMPRAAHRLTGYLEEEAHRAYTEYLECIDNGKLKNKPAP
EIAKNYYHLPKNATMRDVILHVRADEAMHRDVNHHFGNKYRDGDTDSPTH
AIGLEHEDVGKRF*
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spliced messenger RNA

>Gchil2232.t1 ID=Gchil2232.t1|Name=Gchil2232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1092bp|location=Sequence derived from alignment at tig00000228_pilon:407570..408807+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTTCTGGTTACTCGTTGGTAAACGCCTTCAAGCACTTCCCTCGAGC
GCTCATGCATGTTGAACATGGAGGAAGTCAATCTATTCCATTTGCCATTA
GGAAGTTCCGTCTCGGTAACGGATCAACTGTCCAGAGCTTCCGTTCTCTT
ACTTTCAAACCACGAGCTGGCCAGAGTATATCGAGTCTGCACAGAAGCAT
GGAAAAGTCTTTCATCCCACCTATACTTTCACATCAGCTATGCACTAAGT
TGCATGCCGGGGTGTCTTCCGGTCAGAACGGCGACGGTGCAATCAAAACT
CGTTACGATTGGATTGACAAAGAAGCCACAGAGTTGATCGGGAAGGCTTA
CAAGCGACACAAAGCATTGGCAGACAAATCAGAATCATTCCCTCCGAGCT
TGTCGGTGCAAGACCTTGAAAGAATTGGTACTCCAGTTCATTACGCACCG
AAGGACTTCGTAGATCGCGTCGCGCTTAATGCAATGAAGATCCTTCGCGT
GTTTGTCCACGCGTTCTTTCGAGAAAAGTATGACCATCATGCTGTTTGCT
TGGAAACCGTTGCTGCGATTCCTGGTCTTGTTGGGAGTTTTCACCGCCAC
CTTCGCTCTCTTCGGAGGATGAAGCGCGACCATGGATGGATTTCGGTCAT
GCAAGAAGAAGCTGAAAACGAAAGAATGCATCTTTTGATTTTCATGAAGA
TCACCCACCCTTCCGCACTCGAGCGGGGATTGGTTATATTGGCACAAGGG
TTATATCTCACCTTCTATTCGGGGTTGTATCTCTTCATGCCACGTGCTGC
ACATCGTCTCACAGGATATTTAGAGGAGGAAGCTCATCGGGCTTACACAG
AATATCTAGAATGCATTGACAATGGAAAACTGAAGAACAAACCGGCTCCA
GAGATCGCAAAGAACTACTATCATCTGCCCAAGAACGCTACCATGCGTGA
TGTGATTCTTCATGTTCGAGCTGATGAGGCAATGCATCGTGACGTGAACC
ATCACTTTGGAAATAAGTATAGAGATGGAGATACAGACTCTCCCACGCAT
GCGATTGGTTTAGAGCACGAGGACGTTGGAAAGCGCTTTTAG
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protein sequence of Gchil2232.t1

>Gchil2232.t1 ID=Gchil2232.t1|Name=Gchil2232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=364bp
MASGYSLVNAFKHFPRALMHVEHGGSQSIPFAIRKFRLGNGSTVQSFRSL
TFKPRAGQSISSLHRSMEKSFIPPILSHQLCTKLHAGVSSGQNGDGAIKT
RYDWIDKEATELIGKAYKRHKALADKSESFPPSLSVQDLERIGTPVHYAP
KDFVDRVALNAMKILRVFVHAFFREKYDHHAVCLETVAAIPGLVGSFHRH
LRSLRRMKRDHGWISVMQEEAENERMHLLIFMKITHPSALERGLVILAQG
LYLTFYSGLYLFMPRAAHRLTGYLEEEAHRAYTEYLECIDNGKLKNKPAP
EIAKNYYHLPKNATMRDVILHVRADEAMHRDVNHHFGNKYRDGDTDSPTH
AIGLEHEDVGKRF*
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mRNA from alignment at tig00000228_pilon:407570..408807+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2232.t1 ID=Gchil2232.t1|Name=Gchil2232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1238bp|location=Sequence derived from alignment at tig00000228_pilon:407570..408807+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCTGGTTACTCGTTGGTAAACGCCTTCAAGCACTTCCCTCGAGC
GCTCATGCATGTTGAACATGGAGGAAGTCAATCTATTCCATTTGCCATTA
GGAAGTTCCGTCTCGGTAACGGATCAACTGTCCAGAGCTTCCGTTCTCTT
ACTTTCAAACCACGAGCTGGCCAGAGTATATCGAGTCTGCACAGAAGCAT
GGAAAAGTCTTTCATCCCACCTATACTTTCACATCAGCTATGCACTAAGT
TGCATGCCGGGGTGTCTTCCGGTCAGAACGGCGACGGTGCAATCAAAACT
CGTTACGATTGGATTGACAAAGTAAGTGCCCAACATGTTCACTTCGAAGA
AAAATATATTCCGAAATGCTTACCTACATGTTCCCACTATTGTAGGAAGC
CACAGAGTTGATCGGGAAGGCTTACAAGCGACACAAAGCATTGGCAGACA
AATCAGAATCATTCCCTCCGAGCTTGTCGGTGCAAGACCTTGAAAGAATT
GGTACTCCAGTTCATTACGCACCGAAGGACTTCGTAGATCGCGTCGCGCT
TAATGCAATGAAGATCCTTCGCGTGTTTGTCCACGCGTTCTTTCGAGAAA
AGTATGACCATCATGCTGTTTGCTTGGAAACCGTTGCTGCGATTCCTGGT
CTTGTTGGGAGTTTTCACCGCCACCTTCGCTCTCTTCGGAGGATGAAGCG
CGACCATGGATGTAGGTTTTATTTCACTCTTGTTCGCTAGAGTTCAAATA
TAAGCATTCTAACGTTTATCCAACTTCGATTAGGGATTTCGGTCATGCAA
GAAGAAGCTGAAAACGAAAGAATGCATCTTTTGATTTTCATGAAGATCAC
CCACCCTTCCGCACTCGAGCGGGGATTGGTTATATTGGCACAAGGGTTAT
ATCTCACCTTCTATTCGGGGTTGTATCTCTTCATGCCACGTGCTGCACAT
CGTCTCACAGGATATTTAGAGGAGGAAGCTCATCGGGCTTACACAGAATA
TCTAGAATGCATTGACAATGGAAAACTGAAGAACAAACCGGCTCCAGAGA
TCGCAAAGAACTACTATCATCTGCCCAAGAACGCTACCATGCGTGATGTG
ATTCTTCATGTTCGAGCTGATGAGGCAATGCATCGTGACGTGAACCATCA
CTTTGGAAATAAGTATAGAGATGGAGATACAGACTCTCCCACGCATGCGA
TTGGTTTAGAGCACGAGGACGTTGGAAAGCGCTTTTAG
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Coding sequence (CDS) from alignment at tig00000228_pilon:407570..408807+

>Gchil2232.t1 ID=Gchil2232.t1|Name=Gchil2232.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1092bp|location=Sequence derived from alignment at tig00000228_pilon:407570..408807+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTTCTGGTTACTCGTTGGTAAACGCCTTCAAGCACTTCCCTCGAGC
GCTCATGCATGTTGAACATGGAGGAAGTCAATCTATTCCATTTGCCATTA
GGAAGTTCCGTCTCGGTAACGGATCAACTGTCCAGAGCTTCCGTTCTCTT
ACTTTCAAACCACGAGCTGGCCAGAGTATATCGAGTCTGCACAGAAGCAT
GGAAAAGTCTTTCATCCCACCTATACTTTCACATCAGCTATGCACTAAGT
TGCATGCCGGGGTGTCTTCCGGTCAGAACGGCGACGGTGCAATCAAAACT
CGTTACGATTGGATTGACAAAGAAGCCACAGAGTTGATCGGGAAGGCTTA
CAAGCGACACAAAGCATTGGCAGACAAATCAGAATCATTCCCTCCGAGCT
TGTCGGTGCAAGACCTTGAAAGAATTGGTACTCCAGTTCATTACGCACCG
AAGGACTTCGTAGATCGCGTCGCGCTTAATGCAATGAAGATCCTTCGCGT
GTTTGTCCACGCGTTCTTTCGAGAAAAGTATGACCATCATGCTGTTTGCT
TGGAAACCGTTGCTGCGATTCCTGGTCTTGTTGGGAGTTTTCACCGCCAC
CTTCGCTCTCTTCGGAGGATGAAGCGCGACCATGGATGGATTTCGGTCAT
GCAAGAAGAAGCTGAAAACGAAAGAATGCATCTTTTGATTTTCATGAAGA
TCACCCACCCTTCCGCACTCGAGCGGGGATTGGTTATATTGGCACAAGGG
TTATATCTCACCTTCTATTCGGGGTTGTATCTCTTCATGCCACGTGCTGC
ACATCGTCTCACAGGATATTTAGAGGAGGAAGCTCATCGGGCTTACACAG
AATATCTAGAATGCATTGACAATGGAAAACTGAAGAACAAACCGGCTCCA
GAGATCGCAAAGAACTACTATCATCTGCCCAAGAACGCTACCATGCGTGA
TGTGATTCTTCATGTTCGAGCTGATGAGGCAATGCATCGTGACGTGAACC
ATCACTTTGGAAATAAGTATAGAGATGGAGATACAGACTCTCCCACGCAT
GCGATTGGTTTAGAGCACGAGGACGTTGGAAAGCGCTTTTAG
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