Gchil2228.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2228.t1
Unique Name	Gchil2228.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	294

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000228_pilon	contig	tig00000228_pilon:358874..359755 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	4565.Traes_6DS_8CB5C0B1E.1
PFAMs	Lactamase_B_2
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K00784
KEGG Pathway	ko03013,map03013
GOs	GO:0003674,GO:0003824,GO:0004518,GO:0004519,GO:0004521,GO:0004540,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0006139,GO:0006396,GO:0006399,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009987,GO:0010467,GO:0016070,GO:0016787,GO:0016788,GO:0016891,GO:0016893,GO:0031123,GO:0034414,GO:0034470,GO:0034641,GO:0034660,GO:0042779,GO:0042780,GO:0042781,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043628,GO:0044237,GO:0044238,GO:0044424,GO:0044464,GO:0046483,GO:0071704,GO:0090304,GO:0090305,GO:0090501,GO:0090502,GO:0140098,GO:1901360,GO:1905267
Evalue	8.92e-66
EggNOG OGs	COG1234@1\|root,2QVD0@2759\|Eukaryota,37J4D@33090\|Viridiplantae,3GGSH@35493\|Streptophyta,3KTH7@4447\|Liliopsida,3IBBD@38820\|Poales
EC	3.1.26.11
Description	nuclear ribonuclease
COG category	S
BRITE	ko00000,ko00001,ko01000,ko03016

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2228	Gchil2228	Gracilaria chilensis NLEC103_M9 male	gene	tig00000228_pilon 358874..359755 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2228.t1.start1	Gchil2228.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000228_pilon 358874..358876 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2228.t1.CDS1	Gchil2228.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000228_pilon 358874..359755 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2228.t1.exon1	Gchil2228.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000228_pilon 358874..359755 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2228.t1.stop1	Gchil2228.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000228_pilon 359753..359755 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2228.t1	Gchil2228.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000228_pilon 358874..359755 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000228_pilon:358874..359755+
coding sequence from alignment at tig00000228_pilon:358874..359755+

mRNA sequence

>Gchil2228.t1 ID=Gchil2228.t1|Name=Gchil2228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=294bp
MHVDRSIPERINIAGLDICGISVAAVETCIWIPSLSLAFDSGRCPRGVVG
MRYMAITHGHCDHIHGLPLHLATRTLQQLPKPRYFLPKLIEEDVRDFVAI
VGKLEQCSLDLESIPLTPGIDEVEFKKGWVIRSVQTKHTVPSQGYVVLRK
RKKLKREFMGLSGSELVALKRKNVVIEDVIRTPEIAYTGDTGLEAIRESE
EFRKARILITEMTFIDEACTAREASLFGHIHLDEVIEKSEVFRDNETVIF
THFSARYTRKEILEALDTLPTELKEKSIAFGIGGRKSPKNGST*

spliced messenger RNA

>Gchil2228.t1 ID=Gchil2228.t1|Name=Gchil2228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000228_pilon:358874..359755+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCACGTTGATAGAAGTATTCCAGAGAGGATAAATATCGCAGGACTTGA
TATTTGTGGTATTTCAGTAGCAGCGGTCGAGACTTGCATATGGATACCAT
CTCTATCACTCGCTTTCGATTCTGGTCGCTGTCCAAGAGGGGTAGTAGGT
ATGCGCTACATGGCTATTACTCATGGGCATTGCGACCATATTCATGGCCT
GCCTTTACATCTTGCCACCAGGACACTGCAACAGCTCCCAAAACCTCGCT
ATTTTCTACCAAAACTTATAGAGGAAGACGTTCGCGACTTTGTCGCAATA
GTTGGAAAACTTGAACAGTGTTCGTTGGATTTGGAGTCAATACCACTGAC
GCCAGGTATTGACGAGGTAGAGTTTAAGAAGGGTTGGGTTATCCGATCCG
TCCAAACAAAACACACCGTGCCGTCTCAGGGGTATGTAGTTCTACGCAAG
CGGAAAAAACTTAAGAGGGAGTTCATGGGACTCAGCGGGAGCGAGCTTGT
CGCTCTAAAGCGAAAGAATGTCGTAATTGAGGACGTTATTCGAACACCGG
AGATCGCATACACAGGCGATACGGGACTTGAAGCGATCAGAGAGTCGGAA
GAATTCCGAAAAGCCCGTATATTGATAACAGAGATGACTTTCATTGACGA
AGCGTGCACGGCGAGAGAAGCTTCCCTTTTTGGACACATACACCTGGACG
AAGTTATTGAGAAAAGCGAAGTGTTTCGCGACAATGAAACAGTCATTTTC
ACTCATTTCAGTGCTCGATACACAAGAAAAGAAATTCTCGAAGCTTTGGA
CACACTTCCAACTGAACTGAAAGAGAAGAGCATTGCATTTGGCATCGGTG
GACGGAAGAGCCCTAAAAATGGCAGTACATGA

protein sequence of Gchil2228.t1

>Gchil2228.t1 ID=Gchil2228.t1|Name=Gchil2228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=294bp
MHVDRSIPERINIAGLDICGISVAAVETCIWIPSLSLAFDSGRCPRGVVG
MRYMAITHGHCDHIHGLPLHLATRTLQQLPKPRYFLPKLIEEDVRDFVAI
VGKLEQCSLDLESIPLTPGIDEVEFKKGWVIRSVQTKHTVPSQGYVVLRK
RKKLKREFMGLSGSELVALKRKNVVIEDVIRTPEIAYTGDTGLEAIRESE
EFRKARILITEMTFIDEACTAREASLFGHIHLDEVIEKSEVFRDNETVIF
THFSARYTRKEILEALDTLPTELKEKSIAFGIGGRKSPKNGST*

mRNA from alignment at tig00000228_pilon:358874..359755+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2228.t1 ID=Gchil2228.t1|Name=Gchil2228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=882bp|location=Sequence derived from alignment at tig00000228_pilon:358874..359755+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACGTTGATAGAAGTATTCCAGAGAGGATAAATATCGCAGGACTTGA
TATTTGTGGTATTTCAGTAGCAGCGGTCGAGACTTGCATATGGATACCAT
CTCTATCACTCGCTTTCGATTCTGGTCGCTGTCCAAGAGGGGTAGTAGGT
ATGCGCTACATGGCTATTACTCATGGGCATTGCGACCATATTCATGGCCT
GCCTTTACATCTTGCCACCAGGACACTGCAACAGCTCCCAAAACCTCGCT
ATTTTCTACCAAAACTTATAGAGGAAGACGTTCGCGACTTTGTCGCAATA
GTTGGAAAACTTGAACAGTGTTCGTTGGATTTGGAGTCAATACCACTGAC
GCCAGGTATTGACGAGGTAGAGTTTAAGAAGGGTTGGGTTATCCGATCCG
TCCAAACAAAACACACCGTGCCGTCTCAGGGGTATGTAGTTCTACGCAAG
CGGAAAAAACTTAAGAGGGAGTTCATGGGACTCAGCGGGAGCGAGCTTGT
CGCTCTAAAGCGAAAGAATGTCGTAATTGAGGACGTTATTCGAACACCGG
AGATCGCATACACAGGCGATACGGGACTTGAAGCGATCAGAGAGTCGGAA
GAATTCCGAAAAGCCCGTATATTGATAACAGAGATGACTTTCATTGACGA
AGCGTGCACGGCGAGAGAAGCTTCCCTTTTTGGACACATACACCTGGACG
AAGTTATTGAGAAAAGCGAAGTGTTTCGCGACAATGAAACAGTCATTTTC
ACTCATTTCAGTGCTCGATACACAAGAAAAGAAATTCTCGAAGCTTTGGA
CACACTTCCAACTGAACTGAAAGAGAAGAGCATTGCATTTGGCATCGGTG
GACGGAAGAGCCCTAAAAATGGCAGTACATGA

Coding sequence (CDS) from alignment at tig00000228_pilon:358874..359755+

>Gchil2228.t1 ID=Gchil2228.t1|Name=Gchil2228.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=882bp|location=Sequence derived from alignment at tig00000228_pilon:358874..359755+ (Gracilaria chilensis NLEC103_M9 male)
ATGCACGTTGATAGAAGTATTCCAGAGAGGATAAATATCGCAGGACTTGA
TATTTGTGGTATTTCAGTAGCAGCGGTCGAGACTTGCATATGGATACCAT
CTCTATCACTCGCTTTCGATTCTGGTCGCTGTCCAAGAGGGGTAGTAGGT
ATGCGCTACATGGCTATTACTCATGGGCATTGCGACCATATTCATGGCCT
GCCTTTACATCTTGCCACCAGGACACTGCAACAGCTCCCAAAACCTCGCT
ATTTTCTACCAAAACTTATAGAGGAAGACGTTCGCGACTTTGTCGCAATA
GTTGGAAAACTTGAACAGTGTTCGTTGGATTTGGAGTCAATACCACTGAC
GCCAGGTATTGACGAGGTAGAGTTTAAGAAGGGTTGGGTTATCCGATCCG
TCCAAACAAAACACACCGTGCCGTCTCAGGGGTATGTAGTTCTACGCAAG
CGGAAAAAACTTAAGAGGGAGTTCATGGGACTCAGCGGGAGCGAGCTTGT
CGCTCTAAAGCGAAAGAATGTCGTAATTGAGGACGTTATTCGAACACCGG
AGATCGCATACACAGGCGATACGGGACTTGAAGCGATCAGAGAGTCGGAA
GAATTCCGAAAAGCCCGTATATTGATAACAGAGATGACTTTCATTGACGA
AGCGTGCACGGCGAGAGAAGCTTCCCTTTTTGGACACATACACCTGGACG
AAGTTATTGAGAAAAGCGAAGTGTTTCGCGACAATGAAACAGTCATTTTC
ACTCATTTCAGTGCTCGATACACAAGAAAAGAAATTCTCGAAGCTTTGGA
CACACTTCCAACTGAACTGAAAGAGAAGAGCATTGCATTTGGCATCGGTG
GACGGAAGAGCCCTAAAAATGGCAGTACATGA