Gchil2226.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2226.t1
Unique Name	Gchil2226.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	466

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000228_pilon	contig	tig00000228_pilon:354957..356354 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	215358.XP_010750450.1
Preferred name	C1GALT1
PFAMs	Fringe
Max annot lvl	33208\|Metazoa
KEGG ko	ko:K00731
KEGG Reaction	R05908
KEGG Pathway	ko00512,ko01100,map00512,map01100
KEGG Module	M00056
Evalue	0.000361
EggNOG OGs	KOG2246@1\|root,KOG2246@2759\|Eukaryota,38Y7M@33154\|Opisthokonta,3BN08@33208\|Metazoa,3D4ZH@33213\|Bilateria,4881B@7711\|Chordata,493JK@7742\|Vertebrata,49VM4@7898\|Actinopterygii
EC	2.4.1.122
Description	Glycosyltransferase that generates the core 1 O-glycan Gal-beta1-3GalNAc-alpha1-Ser Thr (T antigen), which is a precursor for many extended O-glycans in glycoproteins
COG category	G
CAZy	GT31
BRITE	ko00000,ko00001,ko00002,ko01000,ko01003

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2226	Gchil2226	Gracilaria chilensis NLEC103_M9 male	gene	tig00000228_pilon 354957..356354 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2226.t1.start1	Gchil2226.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000228_pilon 354957..354959 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2226.t1.CDS1	Gchil2226.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000228_pilon 354957..356354 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2226.t1.exon1	Gchil2226.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000228_pilon 354957..356354 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2226.t1.stop1	Gchil2226.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000228_pilon 356352..356354 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2226.t1	Gchil2226.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000228_pilon 354957..356354 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000228_pilon:354957..356354+
coding sequence from alignment at tig00000228_pilon:354957..356354+

mRNA sequence

>Gchil2226.t1 ID=Gchil2226.t1|Name=Gchil2226.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=466bp
MYTTTHFIIRGNIAFDDVFDMHLVEVEDEEYLDRLRNSTQLDFSDPLSNF
NKTEVLLGRIQWDYVYGELTRNPNPPTLTKYKTRLLRELLNKTHYKLGTK
QKLARGVSCNYANDVGDKESPHAFECTPTSHRCPDGRFFPGTAFVPKEGT
SIGWAEVVIVVLLTEGREDFLRAALDTWISRLQIEATLFFVLDKGLSLPQ
ELQLRPNTFTYECPGTPGLETLDFKSIMGWRRAHELFSFKGKKYFLKIDD
DTFLLGHNLIRYLNKIEHVFGGMEEAIYFGHPFCGHGDLKALNYETWCYA
GGGAYGLSFEALTIFLKQVKDGCAYFYEYLGQAPNMRPESDRYGGHYEDV
MVGRCIRQARTKLHDRGTSLLACGSFFPYAPLHYYEATGKSKEAMCKKLE
GDPITIHNLEPSAILFLDHLLYEYPLGGEIKPFSPQNEHVQELIDYCYMT
GKKMSCDMSRVSRSD*

spliced messenger RNA

>Gchil2226.t1 ID=Gchil2226.t1|Name=Gchil2226.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00000228_pilon:354957..356354+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTACACTACTACGCATTTCATCATCCGCGGCAATATCGCGTTTGACGA
TGTTTTCGATATGCATCTCGTCGAAGTAGAAGACGAGGAATATCTCGATC
GACTACGCAATTCAACTCAGCTCGATTTTTCCGATCCCTTGAGCAATTTT
AACAAAACAGAAGTGCTGCTTGGGCGCATTCAATGGGATTATGTATACGG
CGAGCTCACCAGAAATCCTAACCCGCCAACTTTGACCAAATACAAGACAA
GGTTGCTACGCGAACTTCTAAACAAAACCCACTACAAGCTGGGTACCAAA
CAAAAGCTTGCACGTGGTGTATCTTGTAATTATGCAAATGATGTTGGGGA
TAAGGAATCCCCTCATGCGTTTGAATGTACCCCAACGTCCCATCGTTGTC
CGGACGGCAGGTTTTTCCCCGGAACCGCTTTCGTTCCCAAGGAGGGAACG
TCAATCGGTTGGGCGGAAGTTGTCATTGTGGTTTTACTAACAGAGGGTCG
CGAAGATTTTCTTCGAGCGGCTCTTGATACGTGGATTTCTAGGTTACAGA
TAGAAGCGACTCTATTTTTCGTGTTGGATAAAGGGCTCTCACTCCCGCAA
GAACTTCAGCTGCGCCCGAATACGTTCACATATGAATGTCCAGGAACTCC
TGGTTTGGAGACACTAGACTTCAAATCAATAATGGGCTGGCGGCGTGCAC
ATGAACTATTCTCGTTCAAAGGAAAAAAGTATTTCCTCAAGATCGATGAC
GATACCTTTCTTCTGGGTCACAATTTGATTCGATATTTAAACAAGATCGA
ACATGTCTTTGGCGGTATGGAAGAAGCCATATATTTTGGACACCCGTTCT
GCGGCCACGGTGATCTCAAGGCTCTCAACTACGAAACGTGGTGTTACGCA
GGGGGCGGTGCATATGGACTTAGTTTTGAGGCCCTAACCATCTTTTTGAA
ACAAGTCAAAGACGGGTGTGCGTACTTCTACGAATATTTGGGTCAAGCTC
CCAACATGCGCCCGGAAAGCGACAGGTATGGTGGACACTATGAGGATGTT
ATGGTTGGCCGCTGTATACGCCAAGCTAGAACAAAGCTGCATGATAGAGG
CACGTCACTTCTTGCGTGTGGTAGCTTCTTCCCATATGCTCCTCTTCATT
ACTATGAGGCAACTGGAAAGAGCAAGGAGGCTATGTGCAAGAAGTTGGAA
GGGGACCCTATAACCATTCACAATCTTGAGCCTTCTGCTATCTTGTTCTT
GGATCACTTACTATACGAGTATCCACTAGGTGGGGAGATCAAGCCTTTCT
CCCCACAAAATGAACATGTTCAAGAGCTCATCGACTATTGTTATATGACA
GGGAAGAAAATGTCTTGTGATATGTCACGCGTATCTCGAAGTGATTAA

protein sequence of Gchil2226.t1

>Gchil2226.t1 ID=Gchil2226.t1|Name=Gchil2226.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=466bp
MYTTTHFIIRGNIAFDDVFDMHLVEVEDEEYLDRLRNSTQLDFSDPLSNF
NKTEVLLGRIQWDYVYGELTRNPNPPTLTKYKTRLLRELLNKTHYKLGTK
QKLARGVSCNYANDVGDKESPHAFECTPTSHRCPDGRFFPGTAFVPKEGT
SIGWAEVVIVVLLTEGREDFLRAALDTWISRLQIEATLFFVLDKGLSLPQ
ELQLRPNTFTYECPGTPGLETLDFKSIMGWRRAHELFSFKGKKYFLKIDD
DTFLLGHNLIRYLNKIEHVFGGMEEAIYFGHPFCGHGDLKALNYETWCYA
GGGAYGLSFEALTIFLKQVKDGCAYFYEYLGQAPNMRPESDRYGGHYEDV
MVGRCIRQARTKLHDRGTSLLACGSFFPYAPLHYYEATGKSKEAMCKKLE
GDPITIHNLEPSAILFLDHLLYEYPLGGEIKPFSPQNEHVQELIDYCYMT
GKKMSCDMSRVSRSD*

mRNA from alignment at tig00000228_pilon:354957..356354+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2226.t1 ID=Gchil2226.t1|Name=Gchil2226.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1398bp|location=Sequence derived from alignment at tig00000228_pilon:354957..356354+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACACTACTACGCATTTCATCATCCGCGGCAATATCGCGTTTGACGA
TGTTTTCGATATGCATCTCGTCGAAGTAGAAGACGAGGAATATCTCGATC
GACTACGCAATTCAACTCAGCTCGATTTTTCCGATCCCTTGAGCAATTTT
AACAAAACAGAAGTGCTGCTTGGGCGCATTCAATGGGATTATGTATACGG
CGAGCTCACCAGAAATCCTAACCCGCCAACTTTGACCAAATACAAGACAA
GGTTGCTACGCGAACTTCTAAACAAAACCCACTACAAGCTGGGTACCAAA
CAAAAGCTTGCACGTGGTGTATCTTGTAATTATGCAAATGATGTTGGGGA
TAAGGAATCCCCTCATGCGTTTGAATGTACCCCAACGTCCCATCGTTGTC
CGGACGGCAGGTTTTTCCCCGGAACCGCTTTCGTTCCCAAGGAGGGAACG
TCAATCGGTTGGGCGGAAGTTGTCATTGTGGTTTTACTAACAGAGGGTCG
CGAAGATTTTCTTCGAGCGGCTCTTGATACGTGGATTTCTAGGTTACAGA
TAGAAGCGACTCTATTTTTCGTGTTGGATAAAGGGCTCTCACTCCCGCAA
GAACTTCAGCTGCGCCCGAATACGTTCACATATGAATGTCCAGGAACTCC
TGGTTTGGAGACACTAGACTTCAAATCAATAATGGGCTGGCGGCGTGCAC
ATGAACTATTCTCGTTCAAAGGAAAAAAGTATTTCCTCAAGATCGATGAC
GATACCTTTCTTCTGGGTCACAATTTGATTCGATATTTAAACAAGATCGA
ACATGTCTTTGGCGGTATGGAAGAAGCCATATATTTTGGACACCCGTTCT
GCGGCCACGGTGATCTCAAGGCTCTCAACTACGAAACGTGGTGTTACGCA
GGGGGCGGTGCATATGGACTTAGTTTTGAGGCCCTAACCATCTTTTTGAA
ACAAGTCAAAGACGGGTGTGCGTACTTCTACGAATATTTGGGTCAAGCTC
CCAACATGCGCCCGGAAAGCGACAGGTATGGTGGACACTATGAGGATGTT
ATGGTTGGCCGCTGTATACGCCAAGCTAGAACAAAGCTGCATGATAGAGG
CACGTCACTTCTTGCGTGTGGTAGCTTCTTCCCATATGCTCCTCTTCATT
ACTATGAGGCAACTGGAAAGAGCAAGGAGGCTATGTGCAAGAAGTTGGAA
GGGGACCCTATAACCATTCACAATCTTGAGCCTTCTGCTATCTTGTTCTT
GGATCACTTACTATACGAGTATCCACTAGGTGGGGAGATCAAGCCTTTCT
CCCCACAAAATGAACATGTTCAAGAGCTCATCGACTATTGTTATATGACA
GGGAAGAAAATGTCTTGTGATATGTCACGCGTATCTCGAAGTGATTAA

Coding sequence (CDS) from alignment at tig00000228_pilon:354957..356354+

>Gchil2226.t1 ID=Gchil2226.t1|Name=Gchil2226.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1398bp|location=Sequence derived from alignment at tig00000228_pilon:354957..356354+ (Gracilaria chilensis NLEC103_M9 male)
ATGTACACTACTACGCATTTCATCATCCGCGGCAATATCGCGTTTGACGA
TGTTTTCGATATGCATCTCGTCGAAGTAGAAGACGAGGAATATCTCGATC
GACTACGCAATTCAACTCAGCTCGATTTTTCCGATCCCTTGAGCAATTTT
AACAAAACAGAAGTGCTGCTTGGGCGCATTCAATGGGATTATGTATACGG
CGAGCTCACCAGAAATCCTAACCCGCCAACTTTGACCAAATACAAGACAA
GGTTGCTACGCGAACTTCTAAACAAAACCCACTACAAGCTGGGTACCAAA
CAAAAGCTTGCACGTGGTGTATCTTGTAATTATGCAAATGATGTTGGGGA
TAAGGAATCCCCTCATGCGTTTGAATGTACCCCAACGTCCCATCGTTGTC
CGGACGGCAGGTTTTTCCCCGGAACCGCTTTCGTTCCCAAGGAGGGAACG
TCAATCGGTTGGGCGGAAGTTGTCATTGTGGTTTTACTAACAGAGGGTCG
CGAAGATTTTCTTCGAGCGGCTCTTGATACGTGGATTTCTAGGTTACAGA
TAGAAGCGACTCTATTTTTCGTGTTGGATAAAGGGCTCTCACTCCCGCAA
GAACTTCAGCTGCGCCCGAATACGTTCACATATGAATGTCCAGGAACTCC
TGGTTTGGAGACACTAGACTTCAAATCAATAATGGGCTGGCGGCGTGCAC
ATGAACTATTCTCGTTCAAAGGAAAAAAGTATTTCCTCAAGATCGATGAC
GATACCTTTCTTCTGGGTCACAATTTGATTCGATATTTAAACAAGATCGA
ACATGTCTTTGGCGGTATGGAAGAAGCCATATATTTTGGACACCCGTTCT
GCGGCCACGGTGATCTCAAGGCTCTCAACTACGAAACGTGGTGTTACGCA
GGGGGCGGTGCATATGGACTTAGTTTTGAGGCCCTAACCATCTTTTTGAA
ACAAGTCAAAGACGGGTGTGCGTACTTCTACGAATATTTGGGTCAAGCTC
CCAACATGCGCCCGGAAAGCGACAGGTATGGTGGACACTATGAGGATGTT
ATGGTTGGCCGCTGTATACGCCAAGCTAGAACAAAGCTGCATGATAGAGG
CACGTCACTTCTTGCGTGTGGTAGCTTCTTCCCATATGCTCCTCTTCATT
ACTATGAGGCAACTGGAAAGAGCAAGGAGGCTATGTGCAAGAAGTTGGAA
GGGGACCCTATAACCATTCACAATCTTGAGCCTTCTGCTATCTTGTTCTT
GGATCACTTACTATACGAGTATCCACTAGGTGGGGAGATCAAGCCTTTCT
CCCCACAAAATGAACATGTTCAAGAGCTCATCGACTATTGTTATATGACA
GGGAAGAAAATGTCTTGTGATATGTCACGCGTATCTCGAAGTGATTAA