Gchil2225.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2225.t1
Unique NameGchil2225.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length336
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:351717..352886 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705791.1
PFAMsadh_short
Max annot lvl2759|Eukaryota
Evalue4.33e-87
EggNOG OGsCOG0300@1|root,2QS5G@2759|Eukaryota
DescriptionEnoyl-(Acyl carrier protein) reductase
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2225Gchil2225Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 351717..352886 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2225.t1Gchil2225.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 351717..352886 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2225.t1.start1Gchil2225.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 351717..351719 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2225.t1.CDS1Gchil2225.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 351717..351968 +
Gchil2225.t1.CDS2Gchil2225.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 352030..352392 +
Gchil2225.t1.CDS3Gchil2225.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 352494..352886 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2225.t1.exon1Gchil2225.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 351717..351968 +
Gchil2225.t1.exon2Gchil2225.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 352030..352392 +
Gchil2225.t1.exon3Gchil2225.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 352494..352886 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2225.t1.intron1Gchil2225.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 351969..352029 +
Gchil2225.t1.intron2Gchil2225.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 352393..352493 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2225.t1.stop1Gchil2225.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 352884..352886 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2225.t1 ID=Gchil2225.t1|Name=Gchil2225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=336bp
MADLISTIVSHNSENHATAWGFVSVISVAFFAFYLFSFLMYAAPIAFLSV
LKPQDLRNKYGNWALVTGGSSGIGLAIVRLLASQGVNVFIVALDDALLAE
KHEQLCKEYPDVEFRPIGVDLGDSHGAYMQEIIKQTEGIDISILINNAGF
LVLGFFNEQPIGKYIANLNCNATAAIRLTHHFYSLMVRKNIHGCIMFTSS
AAWFLPAPFASTYGASKALLSHFAGSLAIEAQRHGIDVTVFHPSYTHSSL
YEKTPKLDVVKFLSKFGWTGDEVAKRMFACVGRVVVHDIGFYAMVTNQMG
RFLDSGSLTKCIIPFRDSMAPKPATDERPEQKKVQ*
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spliced messenger RNA

>Gchil2225.t1 ID=Gchil2225.t1|Name=Gchil2225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1008bp|location=Sequence derived from alignment at tig00000228_pilon:351717..352886+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGGATCTAATATCAACAATTGTGTCACACAATTCTGAAAATCATGC
CACGGCATGGGGTTTTGTATCCGTTATCTCGGTGGCGTTCTTTGCTTTTT
ATCTGTTTTCGTTTTTGATGTACGCGGCGCCAATCGCATTCTTGTCAGTT
CTCAAGCCTCAAGATCTGCGTAATAAGTACGGAAACTGGGCCCTTGTGAC
AGGAGGTTCAAGCGGAATTGGATTGGCGATTGTCCGCCTTCTTGCTTCGC
AGGGAGTGAATGTCTTCATCGTTGCTCTAGATGATGCGCTTTTGGCAGAG
AAGCATGAACAACTTTGCAAAGAGTATCCAGACGTCGAATTCCGACCAAT
CGGTGTTGACTTGGGAGATTCGCACGGAGCCTATATGCAAGAAATCATCA
AACAAACAGAAGGCATCGATATCTCCATCTTGATCAACAATGCTGGTTTC
TTGGTTTTAGGTTTTTTCAACGAACAACCTATTGGGAAGTACATTGCGAA
TCTGAACTGTAATGCTACAGCAGCAATACGACTGACGCATCACTTTTATT
CACTTATGGTGAGGAAGAATATCCACGGTTGCATCATGTTCACGTCTTCT
GCGGCATGGTTCTTACCCGCCCCGTTCGCGAGTACATATGGTGCAAGCAA
GGCACTGTTATCTCACTTTGCGGGTTCGTTGGCCATAGAAGCGCAACGAC
ACGGAATAGATGTGACTGTTTTTCACCCATCGTACACCCACAGTAGTCTG
TACGAGAAAACACCGAAACTGGATGTCGTTAAGTTCTTGTCCAAATTTGG
GTGGACAGGTGATGAGGTTGCAAAAAGAATGTTTGCATGTGTAGGGCGTG
TCGTGGTTCATGATATTGGTTTCTACGCCATGGTCACAAACCAGATGGGT
CGATTCCTGGACAGTGGAAGCCTTACTAAGTGCATCATACCTTTTAGAGA
CTCCATGGCACCGAAGCCAGCCACGGATGAACGTCCAGAGCAGAAAAAAG
TCCAATGA
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protein sequence of Gchil2225.t1

>Gchil2225.t1 ID=Gchil2225.t1|Name=Gchil2225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=336bp
MADLISTIVSHNSENHATAWGFVSVISVAFFAFYLFSFLMYAAPIAFLSV
LKPQDLRNKYGNWALVTGGSSGIGLAIVRLLASQGVNVFIVALDDALLAE
KHEQLCKEYPDVEFRPIGVDLGDSHGAYMQEIIKQTEGIDISILINNAGF
LVLGFFNEQPIGKYIANLNCNATAAIRLTHHFYSLMVRKNIHGCIMFTSS
AAWFLPAPFASTYGASKALLSHFAGSLAIEAQRHGIDVTVFHPSYTHSSL
YEKTPKLDVVKFLSKFGWTGDEVAKRMFACVGRVVVHDIGFYAMVTNQMG
RFLDSGSLTKCIIPFRDSMAPKPATDERPEQKKVQ*
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mRNA from alignment at tig00000228_pilon:351717..352886+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2225.t1 ID=Gchil2225.t1|Name=Gchil2225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1170bp|location=Sequence derived from alignment at tig00000228_pilon:351717..352886+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGATCTAATATCAACAATTGTGTCACACAATTCTGAAAATCATGC
CACGGCATGGGGTTTTGTATCCGTTATCTCGGTGGCGTTCTTTGCTTTTT
ATCTGTTTTCGTTTTTGATGTACGCGGCGCCAATCGCATTCTTGTCAGTT
CTCAAGCCTCAAGATCTGCGTAATAAGTACGGAAACTGGGCCCTTGTGAC
AGGAGGTTCAAGCGGAATTGGATTGGCGATTGTCCGCCTTCTTGCTTCGC
AGGTAAGTGATGCGTCAAAATGTTTGTGAAGCAATAGGGCAGTCTCTGAC
AAATAGAACAAAGGGAGTGAATGTCTTCATCGTTGCTCTAGATGATGCGC
TTTTGGCAGAGAAGCATGAACAACTTTGCAAAGAGTATCCAGACGTCGAA
TTCCGACCAATCGGTGTTGACTTGGGAGATTCGCACGGAGCCTATATGCA
AGAAATCATCAAACAAACAGAAGGCATCGATATCTCCATCTTGATCAACA
ATGCTGGTTTCTTGGTTTTAGGTTTTTTCAACGAACAACCTATTGGGAAG
TACATTGCGAATCTGAACTGTAATGCTACAGCAGCAATACGACTGACGCA
TCACTTTTATTCACTTATGGTGAGGAAGAATATCCACGGTTGCATCATGT
TCACGTCTTCTGCGGCATGGTTCTTAGTAAGTTTCCACGAGCCAGTACAC
CAGCGCGACGCATATCGAATCAACGCTGACCATCGCGCATTTTGGAATAC
TTACCAACGTATTGTTATGTCCTGCAGCCCGCCCCGTTCGCGAGTACATA
TGGTGCAAGCAAGGCACTGTTATCTCACTTTGCGGGTTCGTTGGCCATAG
AAGCGCAACGACACGGAATAGATGTGACTGTTTTTCACCCATCGTACACC
CACAGTAGTCTGTACGAGAAAACACCGAAACTGGATGTCGTTAAGTTCTT
GTCCAAATTTGGGTGGACAGGTGATGAGGTTGCAAAAAGAATGTTTGCAT
GTGTAGGGCGTGTCGTGGTTCATGATATTGGTTTCTACGCCATGGTCACA
AACCAGATGGGTCGATTCCTGGACAGTGGAAGCCTTACTAAGTGCATCAT
ACCTTTTAGAGACTCCATGGCACCGAAGCCAGCCACGGATGAACGTCCAG
AGCAGAAAAAAGTCCAATGA
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Coding sequence (CDS) from alignment at tig00000228_pilon:351717..352886+

>Gchil2225.t1 ID=Gchil2225.t1|Name=Gchil2225.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1008bp|location=Sequence derived from alignment at tig00000228_pilon:351717..352886+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCGGATCTAATATCAACAATTGTGTCACACAATTCTGAAAATCATGC
CACGGCATGGGGTTTTGTATCCGTTATCTCGGTGGCGTTCTTTGCTTTTT
ATCTGTTTTCGTTTTTGATGTACGCGGCGCCAATCGCATTCTTGTCAGTT
CTCAAGCCTCAAGATCTGCGTAATAAGTACGGAAACTGGGCCCTTGTGAC
AGGAGGTTCAAGCGGAATTGGATTGGCGATTGTCCGCCTTCTTGCTTCGC
AGGGAGTGAATGTCTTCATCGTTGCTCTAGATGATGCGCTTTTGGCAGAG
AAGCATGAACAACTTTGCAAAGAGTATCCAGACGTCGAATTCCGACCAAT
CGGTGTTGACTTGGGAGATTCGCACGGAGCCTATATGCAAGAAATCATCA
AACAAACAGAAGGCATCGATATCTCCATCTTGATCAACAATGCTGGTTTC
TTGGTTTTAGGTTTTTTCAACGAACAACCTATTGGGAAGTACATTGCGAA
TCTGAACTGTAATGCTACAGCAGCAATACGACTGACGCATCACTTTTATT
CACTTATGGTGAGGAAGAATATCCACGGTTGCATCATGTTCACGTCTTCT
GCGGCATGGTTCTTACCCGCCCCGTTCGCGAGTACATATGGTGCAAGCAA
GGCACTGTTATCTCACTTTGCGGGTTCGTTGGCCATAGAAGCGCAACGAC
ACGGAATAGATGTGACTGTTTTTCACCCATCGTACACCCACAGTAGTCTG
TACGAGAAAACACCGAAACTGGATGTCGTTAAGTTCTTGTCCAAATTTGG
GTGGACAGGTGATGAGGTTGCAAAAAGAATGTTTGCATGTGTAGGGCGTG
TCGTGGTTCATGATATTGGTTTCTACGCCATGGTCACAAACCAGATGGGT
CGATTCCTGGACAGTGGAAGCCTTACTAAGTGCATCATACCTTTTAGAGA
CTCCATGGCACCGAAGCCAGCCACGGATGAACGTCCAGAGCAGAAAAAAG
TCCAATGA
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