Gchil2223.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2223.t1
Unique NameGchil2223.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length519
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:347619..349175 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1501269.EW15_0593
Preferred namesigA
PFAMsSigma70_r1_2,Sigma70_r2,Sigma70_r3,Sigma70_r4
Max annot lvl1117|Cyanobacteria
KEGG koko:K03086
Evalue9.5e-55
EggNOG OGsCOG0568@1|root,COG0568@2|Bacteria,1G0DU@1117|Cyanobacteria,1MM5D@1212|Prochloraceae
DescriptionSigma factors are initiation factors that promote the attachment of RNA polymerase to specific initiation sites and are then released. This sigma factor is the primary sigma factor during exponential growth
COG categoryK
BRITEko00000,ko03021
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2223Gchil2223Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 347619..349175 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2223.t1.start1Gchil2223.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 347619..347621 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2223.t1.CDS1Gchil2223.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 347619..349175 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2223.t1.exon1Gchil2223.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 347619..349175 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2223.t1.stop1Gchil2223.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 349173..349175 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2223.t1Gchil2223.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 347619..349175 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2223.t1 ID=Gchil2223.t1|Name=Gchil2223.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=519bp
MQRVTTFAPPPLLSRRAAPTVDAVADVTSAVRAVLAPRPPRPPRRRVRRV
ASTPSRPRPRPRPRPRPLRRASSPPPSPSPSPSPSPSPSPSAARPELHRR
AVAPARRASQSAAPPPSPSSPSPPLSPPPSPPSSPRERQQRAFLTEQLAR
RQRERTAHSDHHAQQQPLTVEPRTQKKRMRSSLRSRPRNVSNALKDTFQM
YMEEISREDLLAQTQVFALAARIKHAVSMEKHQRTLHAELGRRPSVTELA
TYLRLPPSELKRILLSGTAAKNALVSANLRLVTSVARKVASSKTGTTARL
ALDDMVQEGSVGLIRAAEKFDASRGYRFSTYATWWIRAYVMRSITTQSRS
IKVPSTIVDEYARIRREYSRLRECGVIKPTEEDVAKELGITPAKLCFVVN
VVTRSPISLDLTLGPDVNSSGSRTLGEIVEGDDNVEERLVESFQRKELDL
ALRRCLRPLERAVIRLRFGLEDGQPRTLRETGELLGLSKERIRQLIFRAL
PKMKTAEFQRLLTDAACR*
back to top

spliced messenger RNA

>Gchil2223.t1 ID=Gchil2223.t1|Name=Gchil2223.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000228_pilon:347619..349175+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCAGCGCGTCACCACCTTCGcgccgccgccgctgctgtcgcgtcgcgc
cgcacctaccgtcgacgctgtcgccgacgTTACGAGCGCTGTGCGCGCTG
TGCTGGCGCCGCGTCCGCCTCGTCCACCGCGTCGTCGCGTGCGTCGCGTC
GCGTCCACCCCGTcgcgtccacgtccgcgtccgcgtccgcgtccgcgtcc
gcTTCGCCGAGCATCCTCTCCGCcgccgtcgccgtcgccgtcgccgtcgc
cgtccccatcgccgtcaccgtcTGCTGCGCGTCCCGAACTGCACCGTCGC
GCCGTCGCCCCGGCCCGCCGTGCGTCGCAGTCCGCCGCCCCGCCTCCGTC
GCCCTCGTCGCCCTCGCCGCCTCTCTCGCCGCCTCCCTCGCCGCCTTCGT
CGCCGCGCGAGCGACAGCAACGCGCCTTTCTCACCGAGCAGTTGGCGCGT
CGTCAGCGCGAGAGGACTGCCCATTCCGACCATCATGCCCAACAACAGCC
ACTAACAGTCGAGCCCCGCACGCAAAAAAAGCGCATGCGTTCGTCGCTTC
GTTCTCGTCCTCGCAACGTCTCCAACGCGCTTAAGGATACCTTTCAGATG
TACATGGAGGAGATTTCGCGCGAGGATCTGCTGGCACAGACCCAGGTCTT
TGCCTTGGCCGCCCGCATCAAGCACGCCGTCTCCATGGAGAAGCATCAAC
GCACCCTGCACGCTGAATTAGGCCGGAGGCCTTCCGTCACCGAGCTCGCC
ACATATCTGCGCCTACCTCCATCGGAGCTCAAGCGAATCCTTTTGTCAGG
CACGGCCGCCAAGAATGCGCTCGTGTCTGCCAACCTCCGTCTCGTCACCA
GCGTCGCAAGAAAAGTCGCCTCCTCCAAGACTGGCACCACCGCACGCCTT
GCCCTGGATGACATGGTTCAGGAGGGCAGCGTCGGCCTCATTCGCGCCGC
CGAAAAGTTTGACGCCAGTCGCGGCTACAGGTTTTCCACCTACGCCACAT
GGTGGATTCGCGCCTACGTCATGCGCTCCATAACCACCCAAAGCCGCAGC
ATCAAAGTTCCGAGCACCATTGTCGACGAGTATGCACGCATTCGTAGGGA
GTACTCACGCCTTCGCGAGTGCGGCGTCATCAAACCCACCGAGGAGGATG
TAGCCAAAGAGCTGGGAATCACCCCTGCAAAGCTTTGCTTCGTTGTCAAC
GTCGTCACACGCAGCCCTATCTCTCTGGACCTCACTCTTGGCCCCGATGT
CAACTCCTCCGGCTCGCGAACGCTCGGCGAAATTGTTGAGGGCGATGACA
ATGTCGAGGAGCGCCTCGTGGAAAGCTTCCAGAGAAAGGAACTGGATCTT
GCCCTTCGCCGATGCCTGCGTCCTCTGGAGAGGGCTGTCATCCGCTTGCG
GTTTGGTCTAGAGGATGGCCAGCCACGCACATTGCGCGAGACGGGTGAAT
TGTTGGGGCTGTCGAAGGAGAGGATTCGACAGCTCATCTTCCGCGCCTTG
CCCAAGATGAAGACTGCGGAATTCCAACGCCTGCTCACCGATGCCGCCTG
TCGCTAA
back to top

protein sequence of Gchil2223.t1

>Gchil2223.t1 ID=Gchil2223.t1|Name=Gchil2223.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=519bp
MQRVTTFAPPPLLSRRAAPTVDAVADVTSAVRAVLAPRPPRPPRRRVRRV
ASTPSRPRPRPRPRPRPLRRASSPPPSPSPSPSPSPSPSPSAARPELHRR
AVAPARRASQSAAPPPSPSSPSPPLSPPPSPPSSPRERQQRAFLTEQLAR
RQRERTAHSDHHAQQQPLTVEPRTQKKRMRSSLRSRPRNVSNALKDTFQM
YMEEISREDLLAQTQVFALAARIKHAVSMEKHQRTLHAELGRRPSVTELA
TYLRLPPSELKRILLSGTAAKNALVSANLRLVTSVARKVASSKTGTTARL
ALDDMVQEGSVGLIRAAEKFDASRGYRFSTYATWWIRAYVMRSITTQSRS
IKVPSTIVDEYARIRREYSRLRECGVIKPTEEDVAKELGITPAKLCFVVN
VVTRSPISLDLTLGPDVNSSGSRTLGEIVEGDDNVEERLVESFQRKELDL
ALRRCLRPLERAVIRLRFGLEDGQPRTLRETGELLGLSKERIRQLIFRAL
PKMKTAEFQRLLTDAACR*
back to top

mRNA from alignment at tig00000228_pilon:347619..349175+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2223.t1 ID=Gchil2223.t1|Name=Gchil2223.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1557bp|location=Sequence derived from alignment at tig00000228_pilon:347619..349175+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCGCGTCACCACCTTCGcgccgccgccgctgctgtcgcgtcgcgc
cgcacctaccgtcgacgctgtcgccgacgTTACGAGCGCTGTGCGCGCTG
TGCTGGCGCCGCGTCCGCCTCGTCCACCGCGTCGTCGCGTGCGTCGCGTC
GCGTCCACCCCGTcgcgtccacgtccgcgtccgcgtccgcgtccgcgtcc
gcTTCGCCGAGCATCCTCTCCGCcgccgtcgccgtcgccgtcgccgtcgc
cgtccccatcgccgtcaccgtcTGCTGCGCGTCCCGAACTGCACCGTCGC
GCCGTCGCCCCGGCCCGCCGTGCGTCGCAGTCCGCCGCCCCGCCTCCGTC
GCCCTCGTCGCCCTCGCCGCCTCTCTCGCCGCCTCCCTCGCCGCCTTCGT
CGCCGCGCGAGCGACAGCAACGCGCCTTTCTCACCGAGCAGTTGGCGCGT
CGTCAGCGCGAGAGGACTGCCCATTCCGACCATCATGCCCAACAACAGCC
ACTAACAGTCGAGCCCCGCACGCAAAAAAAGCGCATGCGTTCGTCGCTTC
GTTCTCGTCCTCGCAACGTCTCCAACGCGCTTAAGGATACCTTTCAGATG
TACATGGAGGAGATTTCGCGCGAGGATCTGCTGGCACAGACCCAGGTCTT
TGCCTTGGCCGCCCGCATCAAGCACGCCGTCTCCATGGAGAAGCATCAAC
GCACCCTGCACGCTGAATTAGGCCGGAGGCCTTCCGTCACCGAGCTCGCC
ACATATCTGCGCCTACCTCCATCGGAGCTCAAGCGAATCCTTTTGTCAGG
CACGGCCGCCAAGAATGCGCTCGTGTCTGCCAACCTCCGTCTCGTCACCA
GCGTCGCAAGAAAAGTCGCCTCCTCCAAGACTGGCACCACCGCACGCCTT
GCCCTGGATGACATGGTTCAGGAGGGCAGCGTCGGCCTCATTCGCGCCGC
CGAAAAGTTTGACGCCAGTCGCGGCTACAGGTTTTCCACCTACGCCACAT
GGTGGATTCGCGCCTACGTCATGCGCTCCATAACCACCCAAAGCCGCAGC
ATCAAAGTTCCGAGCACCATTGTCGACGAGTATGCACGCATTCGTAGGGA
GTACTCACGCCTTCGCGAGTGCGGCGTCATCAAACCCACCGAGGAGGATG
TAGCCAAAGAGCTGGGAATCACCCCTGCAAAGCTTTGCTTCGTTGTCAAC
GTCGTCACACGCAGCCCTATCTCTCTGGACCTCACTCTTGGCCCCGATGT
CAACTCCTCCGGCTCGCGAACGCTCGGCGAAATTGTTGAGGGCGATGACA
ATGTCGAGGAGCGCCTCGTGGAAAGCTTCCAGAGAAAGGAACTGGATCTT
GCCCTTCGCCGATGCCTGCGTCCTCTGGAGAGGGCTGTCATCCGCTTGCG
GTTTGGTCTAGAGGATGGCCAGCCACGCACATTGCGCGAGACGGGTGAAT
TGTTGGGGCTGTCGAAGGAGAGGATTCGACAGCTCATCTTCCGCGCCTTG
CCCAAGATGAAGACTGCGGAATTCCAACGCCTGCTCACCGATGCCGCCTG
TCGCTAA
back to top

Coding sequence (CDS) from alignment at tig00000228_pilon:347619..349175+

>Gchil2223.t1 ID=Gchil2223.t1|Name=Gchil2223.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1557bp|location=Sequence derived from alignment at tig00000228_pilon:347619..349175+ (Gracilaria chilensis NLEC103_M9 male)
ATGCAGCGCGTCACCACCTTCGcgccgccgccgctgctgtcgcgtcgcgc
cgcacctaccgtcgacgctgtcgccgacgTTACGAGCGCTGTGCGCGCTG
TGCTGGCGCCGCGTCCGCCTCGTCCACCGCGTCGTCGCGTGCGTCGCGTC
GCGTCCACCCCGTcgcgtccacgtccgcgtccgcgtccgcgtccgcgtcc
gcTTCGCCGAGCATCCTCTCCGCcgccgtcgccgtcgccgtcgccgtcgc
cgtccccatcgccgtcaccgtcTGCTGCGCGTCCCGAACTGCACCGTCGC
GCCGTCGCCCCGGCCCGCCGTGCGTCGCAGTCCGCCGCCCCGCCTCCGTC
GCCCTCGTCGCCCTCGCCGCCTCTCTCGCCGCCTCCCTCGCCGCCTTCGT
CGCCGCGCGAGCGACAGCAACGCGCCTTTCTCACCGAGCAGTTGGCGCGT
CGTCAGCGCGAGAGGACTGCCCATTCCGACCATCATGCCCAACAACAGCC
ACTAACAGTCGAGCCCCGCACGCAAAAAAAGCGCATGCGTTCGTCGCTTC
GTTCTCGTCCTCGCAACGTCTCCAACGCGCTTAAGGATACCTTTCAGATG
TACATGGAGGAGATTTCGCGCGAGGATCTGCTGGCACAGACCCAGGTCTT
TGCCTTGGCCGCCCGCATCAAGCACGCCGTCTCCATGGAGAAGCATCAAC
GCACCCTGCACGCTGAATTAGGCCGGAGGCCTTCCGTCACCGAGCTCGCC
ACATATCTGCGCCTACCTCCATCGGAGCTCAAGCGAATCCTTTTGTCAGG
CACGGCCGCCAAGAATGCGCTCGTGTCTGCCAACCTCCGTCTCGTCACCA
GCGTCGCAAGAAAAGTCGCCTCCTCCAAGACTGGCACCACCGCACGCCTT
GCCCTGGATGACATGGTTCAGGAGGGCAGCGTCGGCCTCATTCGCGCCGC
CGAAAAGTTTGACGCCAGTCGCGGCTACAGGTTTTCCACCTACGCCACAT
GGTGGATTCGCGCCTACGTCATGCGCTCCATAACCACCCAAAGCCGCAGC
ATCAAAGTTCCGAGCACCATTGTCGACGAGTATGCACGCATTCGTAGGGA
GTACTCACGCCTTCGCGAGTGCGGCGTCATCAAACCCACCGAGGAGGATG
TAGCCAAAGAGCTGGGAATCACCCCTGCAAAGCTTTGCTTCGTTGTCAAC
GTCGTCACACGCAGCCCTATCTCTCTGGACCTCACTCTTGGCCCCGATGT
CAACTCCTCCGGCTCGCGAACGCTCGGCGAAATTGTTGAGGGCGATGACA
ATGTCGAGGAGCGCCTCGTGGAAAGCTTCCAGAGAAAGGAACTGGATCTT
GCCCTTCGCCGATGCCTGCGTCCTCTGGAGAGGGCTGTCATCCGCTTGCG
GTTTGGTCTAGAGGATGGCCAGCCACGCACATTGCGCGAGACGGGTGAAT
TGTTGGGGCTGTCGAAGGAGAGGATTCGACAGCTCATCTTCCGCGCCTTG
CCCAAGATGAAGACTGCGGAATTCCAACGCCTGCTCACCGATGCCGCCTG
TCGCTAA
back to top