Gchil2222.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2222.t1
Unique NameGchil2222.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length412
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:344401..345636 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2222Gchil2222Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 344401..345636 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2222.t1.stop1Gchil2222.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 344401..344403 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2222.t1.CDS1Gchil2222.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 344401..345636 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2222.t1.exon1Gchil2222.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 344401..345636 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2222.t1.start1Gchil2222.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 345634..345636 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2222.t1Gchil2222.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 344401..345636 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2222.t1 ID=Gchil2222.t1|Name=Gchil2222.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=412bp
MAYSSSAHGQPLYANYAIPQQQPSATAAARSAPTPPPSSAASLSVSAPPT
RDRRRNSRTTTKRSRAPSRAAALTAVRAVSVANAAPNNPDHAALLQNQNQ
TAAAAAAAAAAAAAAAQQPHGLAHTQSQHNARHAQQQLSQPQQPQQHQQP
QHQQPQHQQQQHQQIAQQRQQKQEQTAHDVEVVQTQQQASTSQGGSAGGG
AGGAGSAGGAGGAAVGGGAANAEEQSRPERKREREKRRRETMNTRFQQLA
ACLVISAGGKSDKESILAEAVEHVKKQAALIEDLERRNQNLQVETRDLRA
EKTELRQDKKFMMEEHDRLKAEVQQLQVELRSHGVGPKKRGKSDVAAGVV
GGMDFKRDDSGMQRSDGGRAKKRSKSGDDRRAEEYKMSAAAKRRDEAAAA
KAARKSEMTSA*
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spliced messenger RNA

>Gchil2222.t1 ID=Gchil2222.t1|Name=Gchil2222.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000228_pilon:344401..345636- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCTACTCGTCTTCGGCACATGGTCAACCGCTTTACGCCAACTACGC
CATTCCTCAGCAGCAACCCTCGGCCACTGCCGCAGCTCGCTCTGCTCCGA
CACCACCCCCGTCTTCGGCCGCATCCTTGTCGGTCTCCGCTCCCCCTACC
AGGGACCGCCGCCGCAACAGTCGTACCACAACCAAACGCTCTCGAGCTCC
GTCTCGAGCTGCCGCTCTCACTGCCGTGCGCGCCGTATCTGTCGCTAATG
CCGCCCCCAACAACCCGGACCACGCCGCTTTGCTGCAGAATCAGAACCAG
ACCGCTGCCGCTGCTGCCGCCGCTGCCGCCGCTGCCGCTGCCGCTGCGCA
ACAGCCGCATGGCCTGGCACACACCCAGTCGCAGCACAACGCGCGTCACG
CACAGCAGCAGCTCTCTCAGCCGCAGCAACCACAGCAACACCAGCAACCG
CAACACCAGCAACCGCAACACCAGCAACAGCAACACCAGCAGATAGCGCA
GCAGCGACAGCAGAAACAGGAGCAAACAGCACACGACGTTGAGGTCGTGC
AGACGCAGCAGCAGGCTTCCACCTCGCAGGGTGGTTCAGCTGGCGGCGGC
GCCGGCGGTGCTGGCAGTGCGGGTGGCGCAGGCGGTGCGGCAGTTGGCGG
CGGTGCCGCCAACGCTGAGGAGCAGAGCCGCCCGGAACGCAAGCGTGAAC
GTGAGAAACGTCGCAGGGAGACAATGAACACTCGATTCCAGCAGCTCGCC
GCCTGTCTTGTTATTTCTGCGGGTGGAAAATCCGATAAGGAGAGCATTCT
GGCTGAGGCTGTGGAACACGTGAAGAAGCAGGCGGCGCTTATTGAGGACC
TGGAGCGACGCAACCAGAACCTGCAGGTGGAAACGCGCGACTTGCGCGCA
GAAAAGACGGAGTTGCGTCAGGACAAGAAGTTCATGATGGAGGAGCACGA
CCGCCTCAAGGCGGAGGTTCAGCAACTACAAGTGGAACTGCGCTCGCATG
GAGTTGGACCGAAGAAGAGGGGGAAAAGCGATGTGGCAGCGGGAGTGGTT
GGTGGTATGGACTTTAAGAGGGATGACAGTGGAATGCAACGTAGCGATGG
AGGGAGGGCAAAGAAGCGATCCAAGTCGGGTGATGACCGGCGCGCGGAGG
AGTACAAAATGTCTGCAGCTGCGAAGAGACGCGATGAGGCAGCAGCAGCC
AAGGCTGCGCGCAAGTCGGAAATGACTTCTGCGTGA
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protein sequence of Gchil2222.t1

>Gchil2222.t1 ID=Gchil2222.t1|Name=Gchil2222.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=412bp
MAYSSSAHGQPLYANYAIPQQQPSATAAARSAPTPPPSSAASLSVSAPPT
RDRRRNSRTTTKRSRAPSRAAALTAVRAVSVANAAPNNPDHAALLQNQNQ
TAAAAAAAAAAAAAAAQQPHGLAHTQSQHNARHAQQQLSQPQQPQQHQQP
QHQQPQHQQQQHQQIAQQRQQKQEQTAHDVEVVQTQQQASTSQGGSAGGG
AGGAGSAGGAGGAAVGGGAANAEEQSRPERKREREKRRRETMNTRFQQLA
ACLVISAGGKSDKESILAEAVEHVKKQAALIEDLERRNQNLQVETRDLRA
EKTELRQDKKFMMEEHDRLKAEVQQLQVELRSHGVGPKKRGKSDVAAGVV
GGMDFKRDDSGMQRSDGGRAKKRSKSGDDRRAEEYKMSAAAKRRDEAAAA
KAARKSEMTSA*
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mRNA from alignment at tig00000228_pilon:344401..345636-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2222.t1 ID=Gchil2222.t1|Name=Gchil2222.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1236bp|location=Sequence derived from alignment at tig00000228_pilon:344401..345636- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTACTCGTCTTCGGCACATGGTCAACCGCTTTACGCCAACTACGC
CATTCCTCAGCAGCAACCCTCGGCCACTGCCGCAGCTCGCTCTGCTCCGA
CACCACCCCCGTCTTCGGCCGCATCCTTGTCGGTCTCCGCTCCCCCTACC
AGGGACCGCCGCCGCAACAGTCGTACCACAACCAAACGCTCTCGAGCTCC
GTCTCGAGCTGCCGCTCTCACTGCCGTGCGCGCCGTATCTGTCGCTAATG
CCGCCCCCAACAACCCGGACCACGCCGCTTTGCTGCAGAATCAGAACCAG
ACCGCTGCCGCTGCTGCCGCCGCTGCCGCCGCTGCCGCTGCCGCTGCGCA
ACAGCCGCATGGCCTGGCACACACCCAGTCGCAGCACAACGCGCGTCACG
CACAGCAGCAGCTCTCTCAGCCGCAGCAACCACAGCAACACCAGCAACCG
CAACACCAGCAACCGCAACACCAGCAACAGCAACACCAGCAGATAGCGCA
GCAGCGACAGCAGAAACAGGAGCAAACAGCACACGACGTTGAGGTCGTGC
AGACGCAGCAGCAGGCTTCCACCTCGCAGGGTGGTTCAGCTGGCGGCGGC
GCCGGCGGTGCTGGCAGTGCGGGTGGCGCAGGCGGTGCGGCAGTTGGCGG
CGGTGCCGCCAACGCTGAGGAGCAGAGCCGCCCGGAACGCAAGCGTGAAC
GTGAGAAACGTCGCAGGGAGACAATGAACACTCGATTCCAGCAGCTCGCC
GCCTGTCTTGTTATTTCTGCGGGTGGAAAATCCGATAAGGAGAGCATTCT
GGCTGAGGCTGTGGAACACGTGAAGAAGCAGGCGGCGCTTATTGAGGACC
TGGAGCGACGCAACCAGAACCTGCAGGTGGAAACGCGCGACTTGCGCGCA
GAAAAGACGGAGTTGCGTCAGGACAAGAAGTTCATGATGGAGGAGCACGA
CCGCCTCAAGGCGGAGGTTCAGCAACTACAAGTGGAACTGCGCTCGCATG
GAGTTGGACCGAAGAAGAGGGGGAAAAGCGATGTGGCAGCGGGAGTGGTT
GGTGGTATGGACTTTAAGAGGGATGACAGTGGAATGCAACGTAGCGATGG
AGGGAGGGCAAAGAAGCGATCCAAGTCGGGTGATGACCGGCGCGCGGAGG
AGTACAAAATGTCTGCAGCTGCGAAGAGACGCGATGAGGCAGCAGCAGCC
AAGGCTGCGCGCAAGTCGGAAATGACTTCTGCGTGA
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Coding sequence (CDS) from alignment at tig00000228_pilon:344401..345636-

>Gchil2222.t1 ID=Gchil2222.t1|Name=Gchil2222.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1236bp|location=Sequence derived from alignment at tig00000228_pilon:344401..345636- (Gracilaria chilensis NLEC103_M9 male)
ATGGCCTACTCGTCTTCGGCACATGGTCAACCGCTTTACGCCAACTACGC
CATTCCTCAGCAGCAACCCTCGGCCACTGCCGCAGCTCGCTCTGCTCCGA
CACCACCCCCGTCTTCGGCCGCATCCTTGTCGGTCTCCGCTCCCCCTACC
AGGGACCGCCGCCGCAACAGTCGTACCACAACCAAACGCTCTCGAGCTCC
GTCTCGAGCTGCCGCTCTCACTGCCGTGCGCGCCGTATCTGTCGCTAATG
CCGCCCCCAACAACCCGGACCACGCCGCTTTGCTGCAGAATCAGAACCAG
ACCGCTGCCGCTGCTGCCGCCGCTGCCGCCGCTGCCGCTGCCGCTGCGCA
ACAGCCGCATGGCCTGGCACACACCCAGTCGCAGCACAACGCGCGTCACG
CACAGCAGCAGCTCTCTCAGCCGCAGCAACCACAGCAACACCAGCAACCG
CAACACCAGCAACCGCAACACCAGCAACAGCAACACCAGCAGATAGCGCA
GCAGCGACAGCAGAAACAGGAGCAAACAGCACACGACGTTGAGGTCGTGC
AGACGCAGCAGCAGGCTTCCACCTCGCAGGGTGGTTCAGCTGGCGGCGGC
GCCGGCGGTGCTGGCAGTGCGGGTGGCGCAGGCGGTGCGGCAGTTGGCGG
CGGTGCCGCCAACGCTGAGGAGCAGAGCCGCCCGGAACGCAAGCGTGAAC
GTGAGAAACGTCGCAGGGAGACAATGAACACTCGATTCCAGCAGCTCGCC
GCCTGTCTTGTTATTTCTGCGGGTGGAAAATCCGATAAGGAGAGCATTCT
GGCTGAGGCTGTGGAACACGTGAAGAAGCAGGCGGCGCTTATTGAGGACC
TGGAGCGACGCAACCAGAACCTGCAGGTGGAAACGCGCGACTTGCGCGCA
GAAAAGACGGAGTTGCGTCAGGACAAGAAGTTCATGATGGAGGAGCACGA
CCGCCTCAAGGCGGAGGTTCAGCAACTACAAGTGGAACTGCGCTCGCATG
GAGTTGGACCGAAGAAGAGGGGGAAAAGCGATGTGGCAGCGGGAGTGGTT
GGTGGTATGGACTTTAAGAGGGATGACAGTGGAATGCAACGTAGCGATGG
AGGGAGGGCAAAGAAGCGATCCAAGTCGGGTGATGACCGGCGCGCGGAGG
AGTACAAAATGTCTGCAGCTGCGAAGAGACGCGATGAGGCAGCAGCAGCC
AAGGCTGCGCGCAAGTCGGAAATGACTTCTGCGTGA
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