Gchil2220.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2220.t1
Unique NameGchil2220.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length198
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:339448..340041 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2220Gchil2220Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 339448..340041 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2220.t1.start1Gchil2220.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 339448..339450 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2220.t1.CDS1Gchil2220.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 339448..340041 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2220.t1.exon1Gchil2220.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 339448..340041 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2220.t1.stop1Gchil2220.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 340039..340041 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2220.t1Gchil2220.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 339448..340041 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2220.t1 ID=Gchil2220.t1|Name=Gchil2220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=198bp
MKTYVIRKCSNKSCKKVNQEIEYEKNTGYSNPFQHLRLCIAHGDVYRLHD
FYNQKLADKRNVEESRLEPKVNPKEHKEVALYALLRMIVFENLPISVVED
REFCSLTKLEAEFSVNTVCNVIVKLQELVYENILKKSAEEEEYRSKLQDE
LRKTSDLPATLLATNPIVINSITLLRKNEKFWSFKAVQRTYRATKSE*
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spliced messenger RNA

>Gchil2220.t1 ID=Gchil2220.t1|Name=Gchil2220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000228_pilon:339448..340041+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAGACCTACGTTATTCGCAAGTGCTCTAACAAGTCTTGCAAAAAAGT
CAATCAGGAAATTGAATATGAGAAGAACACAGGATATTCCAATCCTTTCC
AGCATCTGAGGTTATGTATTGCACATGGAGACGTCTATCGTCTTCATGAT
TTCTACAATCAGAAGCTGGCGGACAAACGAAATGTGGAGGAAAGTCGTCT
TGAGCCTAAAGTGAACCCAAAAGAACACAAGGAAGTCGCTTTATATGCTC
TACTCCGAATGATTGTCTTTGAAAATCTACCCATTTCGGTTGTTGAAGAC
AGAGAATTCTGTTCTTTGACAAAGCTTGAAGCGGAGTTCTCGGTAAATAC
TGTTTGTAACGTTATTGTTAAACTACAGGAACTGGTTTACGAGAACATCC
TCAAAAAGTCAGCTGAAGAAGAAGAATATAGAAGCAAGTTGCAAGATGAG
CTGAGAAAGACGTCAGATTTGCCGGCGACTCTTCTTGCCACGAACCCGAT
TGTCATAAACTCAATTACTCTTCTTAGGAAGAATGAAAAATTCTGGTCCT
TTAAAGCAGTTCAGAGGACTTATCGCGCGACAAAGAGTGAATGA
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protein sequence of Gchil2220.t1

>Gchil2220.t1 ID=Gchil2220.t1|Name=Gchil2220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=198bp
MKTYVIRKCSNKSCKKVNQEIEYEKNTGYSNPFQHLRLCIAHGDVYRLHD
FYNQKLADKRNVEESRLEPKVNPKEHKEVALYALLRMIVFENLPISVVED
REFCSLTKLEAEFSVNTVCNVIVKLQELVYENILKKSAEEEEYRSKLQDE
LRKTSDLPATLLATNPIVINSITLLRKNEKFWSFKAVQRTYRATKSE*
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mRNA from alignment at tig00000228_pilon:339448..340041+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2220.t1 ID=Gchil2220.t1|Name=Gchil2220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=594bp|location=Sequence derived from alignment at tig00000228_pilon:339448..340041+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGACCTACGTTATTCGCAAGTGCTCTAACAAGTCTTGCAAAAAAGT
CAATCAGGAAATTGAATATGAGAAGAACACAGGATATTCCAATCCTTTCC
AGCATCTGAGGTTATGTATTGCACATGGAGACGTCTATCGTCTTCATGAT
TTCTACAATCAGAAGCTGGCGGACAAACGAAATGTGGAGGAAAGTCGTCT
TGAGCCTAAAGTGAACCCAAAAGAACACAAGGAAGTCGCTTTATATGCTC
TACTCCGAATGATTGTCTTTGAAAATCTACCCATTTCGGTTGTTGAAGAC
AGAGAATTCTGTTCTTTGACAAAGCTTGAAGCGGAGTTCTCGGTAAATAC
TGTTTGTAACGTTATTGTTAAACTACAGGAACTGGTTTACGAGAACATCC
TCAAAAAGTCAGCTGAAGAAGAAGAATATAGAAGCAAGTTGCAAGATGAG
CTGAGAAAGACGTCAGATTTGCCGGCGACTCTTCTTGCCACGAACCCGAT
TGTCATAAACTCAATTACTCTTCTTAGGAAGAATGAAAAATTCTGGTCCT
TTAAAGCAGTTCAGAGGACTTATCGCGCGACAAAGAGTGAATGA
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Coding sequence (CDS) from alignment at tig00000228_pilon:339448..340041+

>Gchil2220.t1 ID=Gchil2220.t1|Name=Gchil2220.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=594bp|location=Sequence derived from alignment at tig00000228_pilon:339448..340041+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAGACCTACGTTATTCGCAAGTGCTCTAACAAGTCTTGCAAAAAAGT
CAATCAGGAAATTGAATATGAGAAGAACACAGGATATTCCAATCCTTTCC
AGCATCTGAGGTTATGTATTGCACATGGAGACGTCTATCGTCTTCATGAT
TTCTACAATCAGAAGCTGGCGGACAAACGAAATGTGGAGGAAAGTCGTCT
TGAGCCTAAAGTGAACCCAAAAGAACACAAGGAAGTCGCTTTATATGCTC
TACTCCGAATGATTGTCTTTGAAAATCTACCCATTTCGGTTGTTGAAGAC
AGAGAATTCTGTTCTTTGACAAAGCTTGAAGCGGAGTTCTCGGTAAATAC
TGTTTGTAACGTTATTGTTAAACTACAGGAACTGGTTTACGAGAACATCC
TCAAAAAGTCAGCTGAAGAAGAAGAATATAGAAGCAAGTTGCAAGATGAG
CTGAGAAAGACGTCAGATTTGCCGGCGACTCTTCTTGCCACGAACCCGAT
TGTCATAAACTCAATTACTCTTCTTAGGAAGAATGAAAAATTCTGGTCCT
TTAAAGCAGTTCAGAGGACTTATCGCGCGACAAAGAGTGAATGA
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