Gchil2217.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2217.t1
Unique Name	Gchil2217.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	368

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000228_pilon	contig	tig00000228_pilon:333127..334230 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	10090.ENSMUSP00000022032
Preferred name	C9orf64
PFAMs	Q_salvage
Max annot lvl	33208\|Metazoa
GOs	GO:0006139,GO:0006396,GO:0006399,GO:0006400,GO:0006725,GO:0006807,GO:0008033,GO:0008150,GO:0008152,GO:0009451,GO:0009987,GO:0010467,GO:0016070,GO:0034470,GO:0034641,GO:0034660,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0046483,GO:0071704,GO:0090304,GO:1901360
Evalue	9.64e-88
EggNOG OGs	KOG2524@1\|root,KOG2524@2759\|Eukaryota,38KFD@33154\|Opisthokonta,3BE32@33208\|Metazoa,3CYYG@33213\|Bilateria,4852J@7711\|Chordata,48WEW@7742\|Vertebrata,3JD23@40674\|Mammalia,35INT@314146\|Euarchontoglires,4PTFT@9989\|Rodentia
Description	Potential Queuosine, Q, salvage protein family
COG category	H

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2217	Gchil2217	Gracilaria chilensis NLEC103_M9 male	gene	tig00000228_pilon 333127..334230 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2217.t1.start1	Gchil2217.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000228_pilon 333127..333129 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2217.t1.CDS1	Gchil2217.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000228_pilon 333127..334230 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2217.t1.exon1	Gchil2217.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000228_pilon 333127..334230 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2217.t1.stop1	Gchil2217.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000228_pilon 334228..334230 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2217.t1	Gchil2217.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000228_pilon 333127..334230 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000228_pilon:333127..334230+
coding sequence from alignment at tig00000228_pilon:333127..334230+

mRNA sequence

>Gchil2217.t1 ID=Gchil2217.t1|Name=Gchil2217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=368bp
MRACPSQLVRETAAFVASLRDSHVSVDAAACKEAAAFLHTLLRGSAHSRQ
SISHAWCNANGLHPSSSSPHALEWIFLVDTLNFCFWTPRAVEPFTVLYKS
TPYTGYWALCAAVNRAIDEQIPITDPHFMTTVDHQTLSHIFRSATSTPIP
LLEQRVHVLNQAGHVLETNFNSSVLFLIQSAHASSQKLIQLLVSNFQSYD
DSFPFDALSTSESYQLPATEQSRPPKLCFFKRAQILVADIWACFASSNKH
HFDDIHQLTMFADYRVPQILVWLNALKYTDSLMSDLKSQLELQSGSRREI
EIRACSIHAVELIRNELQLLQSQTVVQQHNPVQINSVLIDFLLWDYATAH
KDKLNQVPIHHVKSVYY*

spliced messenger RNA

>Gchil2217.t1 ID=Gchil2217.t1|Name=Gchil2217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000228_pilon:333127..334230+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCGCTTGTCCGAGCCAGTTGGTCAGGGAGACTGCGGCGTTCGTTGC
GTCTCTGCGCGATTCGCATGTCTCGGTGGATGCGGCGGCGTGCAAGGAAG
CCGCCGCCTTCCTTCACACCCTGCTTCGCGGGAGCGCGCACTCGCGACAG
TCCATTTCGCACGCATGGTGCAACGCAAACGGGCTGCACCCGTCTTCTTC
CTCGCCACACGCTCTCGAATGGATATTTCTCGTCGATACGCTCAACTTTT
GCTTCTGGACTCCCCGCGCAGTCGAGCCGTTCACCGTCTTGTACAAGAGC
ACTCCGTACACTGGCTACTGGGCTCTTTGTGCAGCTGTCAACAGGGCAAT
CGATGAGCAAATACCCATCACTGACCCGCACTTCATGACCACCGTGGATC
ACCAAACACTTTCGCACATATTCAGATCCGCAACCTCCACGCCCATCCCC
CTTCTTGAGCAGAGGGTACATGTGTTGAACCAAGCCGGACATGTGCTCGA
AACCAACTTTAATTCATCAGTTCTTTTCCTCATTCAAAGCGCTCACGCCA
GCTCCCAGAAACTCATTCAACTACTCGTTTCAAATTTTCAGTCCTACGAC
GATTCTTTCCCATTCGATGCGCTCTCCACGTCCGAATCCTATCAATTGCC
CGCCACTGAGCAATCACGCCCGCCAAAGCTATGCTTCTTTAAACGAGCGC
AGATTTTAGTGGCCGATATTTGGGCATGTTTTGCCTCGAGCAACAAACAT
CATTTTGACGACATTCACCAGCTCACCATGTTTGCCGATTACAGGGTGCC
GCAAATACTCGTGTGGCTCAACGCTTTGAAATATACCGATTCTCTCATGA
GTGACCTCAAGTCGCAACTTGAGCTACAATCTGGTAGTCGTAGAGAGATC
GAAATACGCGCCTGTTCTATTCATGCCGTTGAGCTCATTCGAAACGAATT
GCAACTGTTGCAATCACAAACAGTCGTTCAACAACACAATCCGGTTCAAA
TCAACTCCGTCCTGATTGACTTCCTCCTGTGGGATTACGCTACCGCCCAC
AAGGATAAGTTGAACCAAGTCCCTATACACCATGTTAAATCCGTCTATTA
CTGA

protein sequence of Gchil2217.t1

>Gchil2217.t1 ID=Gchil2217.t1|Name=Gchil2217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=368bp
MRACPSQLVRETAAFVASLRDSHVSVDAAACKEAAAFLHTLLRGSAHSRQ
SISHAWCNANGLHPSSSSPHALEWIFLVDTLNFCFWTPRAVEPFTVLYKS
TPYTGYWALCAAVNRAIDEQIPITDPHFMTTVDHQTLSHIFRSATSTPIP
LLEQRVHVLNQAGHVLETNFNSSVLFLIQSAHASSQKLIQLLVSNFQSYD
DSFPFDALSTSESYQLPATEQSRPPKLCFFKRAQILVADIWACFASSNKH
HFDDIHQLTMFADYRVPQILVWLNALKYTDSLMSDLKSQLELQSGSRREI
EIRACSIHAVELIRNELQLLQSQTVVQQHNPVQINSVLIDFLLWDYATAH
KDKLNQVPIHHVKSVYY*

mRNA from alignment at tig00000228_pilon:333127..334230+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2217.t1 ID=Gchil2217.t1|Name=Gchil2217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1104bp|location=Sequence derived from alignment at tig00000228_pilon:333127..334230+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGCTTGTCCGAGCCAGTTGGTCAGGGAGACTGCGGCGTTCGTTGC
GTCTCTGCGCGATTCGCATGTCTCGGTGGATGCGGCGGCGTGCAAGGAAG
CCGCCGCCTTCCTTCACACCCTGCTTCGCGGGAGCGCGCACTCGCGACAG
TCCATTTCGCACGCATGGTGCAACGCAAACGGGCTGCACCCGTCTTCTTC
CTCGCCACACGCTCTCGAATGGATATTTCTCGTCGATACGCTCAACTTTT
GCTTCTGGACTCCCCGCGCAGTCGAGCCGTTCACCGTCTTGTACAAGAGC
ACTCCGTACACTGGCTACTGGGCTCTTTGTGCAGCTGTCAACAGGGCAAT
CGATGAGCAAATACCCATCACTGACCCGCACTTCATGACCACCGTGGATC
ACCAAACACTTTCGCACATATTCAGATCCGCAACCTCCACGCCCATCCCC
CTTCTTGAGCAGAGGGTACATGTGTTGAACCAAGCCGGACATGTGCTCGA
AACCAACTTTAATTCATCAGTTCTTTTCCTCATTCAAAGCGCTCACGCCA
GCTCCCAGAAACTCATTCAACTACTCGTTTCAAATTTTCAGTCCTACGAC
GATTCTTTCCCATTCGATGCGCTCTCCACGTCCGAATCCTATCAATTGCC
CGCCACTGAGCAATCACGCCCGCCAAAGCTATGCTTCTTTAAACGAGCGC
AGATTTTAGTGGCCGATATTTGGGCATGTTTTGCCTCGAGCAACAAACAT
CATTTTGACGACATTCACCAGCTCACCATGTTTGCCGATTACAGGGTGCC
GCAAATACTCGTGTGGCTCAACGCTTTGAAATATACCGATTCTCTCATGA
GTGACCTCAAGTCGCAACTTGAGCTACAATCTGGTAGTCGTAGAGAGATC
GAAATACGCGCCTGTTCTATTCATGCCGTTGAGCTCATTCGAAACGAATT
GCAACTGTTGCAATCACAAACAGTCGTTCAACAACACAATCCGGTTCAAA
TCAACTCCGTCCTGATTGACTTCCTCCTGTGGGATTACGCTACCGCCCAC
AAGGATAAGTTGAACCAAGTCCCTATACACCATGTTAAATCCGTCTATTA
CTGA

Coding sequence (CDS) from alignment at tig00000228_pilon:333127..334230+

>Gchil2217.t1 ID=Gchil2217.t1|Name=Gchil2217.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1104bp|location=Sequence derived from alignment at tig00000228_pilon:333127..334230+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCGCTTGTCCGAGCCAGTTGGTCAGGGAGACTGCGGCGTTCGTTGC
GTCTCTGCGCGATTCGCATGTCTCGGTGGATGCGGCGGCGTGCAAGGAAG
CCGCCGCCTTCCTTCACACCCTGCTTCGCGGGAGCGCGCACTCGCGACAG
TCCATTTCGCACGCATGGTGCAACGCAAACGGGCTGCACCCGTCTTCTTC
CTCGCCACACGCTCTCGAATGGATATTTCTCGTCGATACGCTCAACTTTT
GCTTCTGGACTCCCCGCGCAGTCGAGCCGTTCACCGTCTTGTACAAGAGC
ACTCCGTACACTGGCTACTGGGCTCTTTGTGCAGCTGTCAACAGGGCAAT
CGATGAGCAAATACCCATCACTGACCCGCACTTCATGACCACCGTGGATC
ACCAAACACTTTCGCACATATTCAGATCCGCAACCTCCACGCCCATCCCC
CTTCTTGAGCAGAGGGTACATGTGTTGAACCAAGCCGGACATGTGCTCGA
AACCAACTTTAATTCATCAGTTCTTTTCCTCATTCAAAGCGCTCACGCCA
GCTCCCAGAAACTCATTCAACTACTCGTTTCAAATTTTCAGTCCTACGAC
GATTCTTTCCCATTCGATGCGCTCTCCACGTCCGAATCCTATCAATTGCC
CGCCACTGAGCAATCACGCCCGCCAAAGCTATGCTTCTTTAAACGAGCGC
AGATTTTAGTGGCCGATATTTGGGCATGTTTTGCCTCGAGCAACAAACAT
CATTTTGACGACATTCACCAGCTCACCATGTTTGCCGATTACAGGGTGCC
GCAAATACTCGTGTGGCTCAACGCTTTGAAATATACCGATTCTCTCATGA
GTGACCTCAAGTCGCAACTTGAGCTACAATCTGGTAGTCGTAGAGAGATC
GAAATACGCGCCTGTTCTATTCATGCCGTTGAGCTCATTCGAAACGAATT
GCAACTGTTGCAATCACAAACAGTCGTTCAACAACACAATCCGGTTCAAA
TCAACTCCGTCCTGATTGACTTCCTCCTGTGGGATTACGCTACCGCCCAC
AAGGATAAGTTGAACCAAGTCCCTATACACCATGTTAAATCCGTCTATTA
CTGA