Gchil2215.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2215.t1
Unique NameGchil2215.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length253
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:324955..325713 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog7159.AAEL007155-PA
Preferred nameSDE2
PFAMsTelomere_Sde2,Telomere_Sde2_2
Max annot lvl33208|Metazoa
GOsGO:0000375,GO:0000377,GO:0000398,GO:0003674,GO:0003676,GO:0003723,GO:0005488,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005681,GO:0005684,GO:0006139,GO:0006396,GO:0006397,GO:0006725,GO:0006807,GO:0008150,GO:0008152,GO:0008380,GO:0009987,GO:0010467,GO:0016070,GO:0016071,GO:0032991,GO:0034641,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044238,GO:0044422,GO:0044424,GO:0044428,GO:0044446,GO:0044464,GO:0046483,GO:0071004,GO:0071010,GO:0071704,GO:0090304,GO:0097159,GO:1901360,GO:1901363,GO:1990904
Evalue6.7e-11
EggNOG OGsKOG2827@1|root,KOG2827@2759|Eukaryota,38STT@33154|Opisthokonta,3BEC5@33208|Metazoa,3CXT0@33213|Bilateria,41ZY3@6656|Arthropoda,3SNIR@50557|Insecta,453D6@7147|Diptera,45KP3@7148|Nematocera
DescriptionTelomere stability and silencing
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2215Gchil2215Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 324955..325713 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2215.t1.stop1Gchil2215.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 324955..324957 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2215.t1.CDS1Gchil2215.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 324955..325713 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2215.t1.exon1Gchil2215.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 324955..325713 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2215.t1.start1Gchil2215.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 325711..325713 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2215.t1Gchil2215.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 324955..325713 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2215.t1 ID=Gchil2215.t1|Name=Gchil2215.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=253bp
MAPVNVLLAGLPDTGTVNLRIGDHTHSLLHGDLTFAINSATGLSTESFYL
CQSGVLLRPESIITKPGEHTAFVQLFFRRALPGGKGGFGALLKGSSATKK
TTNFDSCRDLQGRRLRDVRREQALRAALLQKNETSSRHEAKPSLPVKRKR
VSSEDDETNQEEGLENKLDDIAGEVRKAVASGFRSLASQRKRQRVADKTS
SHPIQNSPPTPMDWIKAYNNVSSDSESDVSDPGFPPSQQSQVGAKDVVSR
NR*
back to top

spliced messenger RNA

>Gchil2215.t1 ID=Gchil2215.t1|Name=Gchil2215.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000228_pilon:324955..325713- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCGCCCGTCAACGTACTTCTCGCAGGTCTTCCAGATACCGGAACCGT
CAATCTTCGAATTGGCGACCACACCCATTCCCTGCTTCATGGCGATCTAA
CCTTTGCCATAAACTCCGCTACTGGCTTGTCCACAGAGTCCTTCTACCTC
TGCCAGTCAGGCGTCTTACTTCGTCCAGAGAGTATCATCACAAAGCCAGG
GGAGCACACCGCGTTTGTTCAACTCTTTTTTCGACGAGCCCTGCCCGGAG
GAAAAGGTGGCTTTGGCGCCTTGCTCAAAGGCTCATCGGCCACAAAGAAA
ACAACAAACTTTGATTCTTGTCGAGATTTGCAGGGACGTCGTCTTCGCGA
TGTTCGAAGAGAACAAGCGCTTAGAGCGGCCCTCCTGCAAAAGAATGAAA
CCAGCTCCCGTCATGAGGCTAAGCCCTCATTACCCGTAAAAAGAAAAAGA
GTTTCCTCTGAAGATGATGAAACAAATCAAGAGGAAGGTCTTGAGAACAA
ACTAGACGATATCGCGGGTGAAGTGAGGAAAGCCGTCGCATCCGGGTTTC
GTTCTCTTGCCTCACAGAGAAAGAGGCAGCGTGTTGCCGATAAAACTTCT
TCACACCCAATTCAAAATTCGCCTCCTACACCAATGGATTGGATAAAAGC
GTACAATAACGTCTCCTCAGATTCTGAGAGCGATGTAAGCGACCCTGGCT
TTCCGCCCTCACAACAGTCTCAAGTTGGCGCCAAAGATGTTGTGTCGCGG
AACCGTTAG
back to top

protein sequence of Gchil2215.t1

>Gchil2215.t1 ID=Gchil2215.t1|Name=Gchil2215.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=253bp
MAPVNVLLAGLPDTGTVNLRIGDHTHSLLHGDLTFAINSATGLSTESFYL
CQSGVLLRPESIITKPGEHTAFVQLFFRRALPGGKGGFGALLKGSSATKK
TTNFDSCRDLQGRRLRDVRREQALRAALLQKNETSSRHEAKPSLPVKRKR
VSSEDDETNQEEGLENKLDDIAGEVRKAVASGFRSLASQRKRQRVADKTS
SHPIQNSPPTPMDWIKAYNNVSSDSESDVSDPGFPPSQQSQVGAKDVVSR
NR*
back to top

mRNA from alignment at tig00000228_pilon:324955..325713-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2215.t1 ID=Gchil2215.t1|Name=Gchil2215.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=759bp|location=Sequence derived from alignment at tig00000228_pilon:324955..325713- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCGTCAACGTACTTCTCGCAGGTCTTCCAGATACCGGAACCGT
CAATCTTCGAATTGGCGACCACACCCATTCCCTGCTTCATGGCGATCTAA
CCTTTGCCATAAACTCCGCTACTGGCTTGTCCACAGAGTCCTTCTACCTC
TGCCAGTCAGGCGTCTTACTTCGTCCAGAGAGTATCATCACAAAGCCAGG
GGAGCACACCGCGTTTGTTCAACTCTTTTTTCGACGAGCCCTGCCCGGAG
GAAAAGGTGGCTTTGGCGCCTTGCTCAAAGGCTCATCGGCCACAAAGAAA
ACAACAAACTTTGATTCTTGTCGAGATTTGCAGGGACGTCGTCTTCGCGA
TGTTCGAAGAGAACAAGCGCTTAGAGCGGCCCTCCTGCAAAAGAATGAAA
CCAGCTCCCGTCATGAGGCTAAGCCCTCATTACCCGTAAAAAGAAAAAGA
GTTTCCTCTGAAGATGATGAAACAAATCAAGAGGAAGGTCTTGAGAACAA
ACTAGACGATATCGCGGGTGAAGTGAGGAAAGCCGTCGCATCCGGGTTTC
GTTCTCTTGCCTCACAGAGAAAGAGGCAGCGTGTTGCCGATAAAACTTCT
TCACACCCAATTCAAAATTCGCCTCCTACACCAATGGATTGGATAAAAGC
GTACAATAACGTCTCCTCAGATTCTGAGAGCGATGTAAGCGACCCTGGCT
TTCCGCCCTCACAACAGTCTCAAGTTGGCGCCAAAGATGTTGTGTCGCGG
AACCGTTAG
back to top

Coding sequence (CDS) from alignment at tig00000228_pilon:324955..325713-

>Gchil2215.t1 ID=Gchil2215.t1|Name=Gchil2215.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=759bp|location=Sequence derived from alignment at tig00000228_pilon:324955..325713- (Gracilaria chilensis NLEC103_M9 male)
ATGGCGCCCGTCAACGTACTTCTCGCAGGTCTTCCAGATACCGGAACCGT
CAATCTTCGAATTGGCGACCACACCCATTCCCTGCTTCATGGCGATCTAA
CCTTTGCCATAAACTCCGCTACTGGCTTGTCCACAGAGTCCTTCTACCTC
TGCCAGTCAGGCGTCTTACTTCGTCCAGAGAGTATCATCACAAAGCCAGG
GGAGCACACCGCGTTTGTTCAACTCTTTTTTCGACGAGCCCTGCCCGGAG
GAAAAGGTGGCTTTGGCGCCTTGCTCAAAGGCTCATCGGCCACAAAGAAA
ACAACAAACTTTGATTCTTGTCGAGATTTGCAGGGACGTCGTCTTCGCGA
TGTTCGAAGAGAACAAGCGCTTAGAGCGGCCCTCCTGCAAAAGAATGAAA
CCAGCTCCCGTCATGAGGCTAAGCCCTCATTACCCGTAAAAAGAAAAAGA
GTTTCCTCTGAAGATGATGAAACAAATCAAGAGGAAGGTCTTGAGAACAA
ACTAGACGATATCGCGGGTGAAGTGAGGAAAGCCGTCGCATCCGGGTTTC
GTTCTCTTGCCTCACAGAGAAAGAGGCAGCGTGTTGCCGATAAAACTTCT
TCACACCCAATTCAAAATTCGCCTCCTACACCAATGGATTGGATAAAAGC
GTACAATAACGTCTCCTCAGATTCTGAGAGCGATGTAAGCGACCCTGGCT
TTCCGCCCTCACAACAGTCTCAAGTTGGCGCCAAAGATGTTGTGTCGCGG
AACCGTTAG
back to top