Gchil2212.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2212.t1
Unique NameGchil2212.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length213
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:313049..313687 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3055.EDP06668
PFAMsAAA_18
Max annot lvl3041|Chlorophyta
KEGG rclassRC00002
KEGG koko:K18532
KEGG ReactionR00127,R01547
KEGG Pathwayko00230,ko01100,ko01110,ko01130,ko03008,map00230,map01100,map01110,map01130,map03008
KEGG ModuleM00049
Evalue1.31e-44
EggNOG OGsCOG1936@1|root,KOG3347@2759|Eukaryota,37QNG@33090|Viridiplantae,34HYJ@3041|Chlorophyta
EC2.7.4.3
DescriptionBroad-specificity nucleoside monophosphate (NMP) kinase that catalyzes the reversible transfer of the terminal phosphate group between nucleoside triphosphates and monophosphates. Has also ATPase activity
COG categoryF
BRITEko00000,ko00001,ko00002,ko01000,ko03009
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2212Gchil2212Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 313049..313687 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2212.t1.start1Gchil2212.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 313049..313051 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2212.t1.CDS1Gchil2212.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 313049..313687 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2212.t1.exon1Gchil2212.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 313049..313687 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2212.t1.stop1Gchil2212.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 313685..313687 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2212.t1Gchil2212.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 313049..313687 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2212.t1 ID=Gchil2212.t1|Name=Gchil2212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=213bp
MIPGLSHEAGGSPDSSQEAPEWWPIRANMLITGTPGVGKTTLSRQLAQEL
GMRHIEIGAFARERNLLGDHDPMLNAFYMDEGAVLDELEPLMVDGGIILD
HHNCDWFPERWVQMVVCLRASTEALYDRLEARGYSYLKRSGNMQAEIMQV
VLEEAVTSYPRVPVIELRNDTEAEKLRNINEVKRAWGPVMRRYRNPGDNS
TEHPEGPEDTVH*
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spliced messenger RNA

>Gchil2212.t1 ID=Gchil2212.t1|Name=Gchil2212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000228_pilon:313049..313687+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATCCCTGGTCTCTCACATGAAGCAGGCGGTTCACCCGACAGCTCGCA
AGAAGCGCCAGAATGGTGGCCAATACGAGCTAATATGCTGATCACAGGAA
CGCCGGGAGTAGGAAAAACCACGTTGAGTCGCCAACTGGCGCAGGAGCTT
GGAATGAGACACATCGAGATTGGAGCATTTGCGAGAGAAAGGAATTTGCT
AGGTGATCACGACCCAATGCTCAACGCTTTCTACATGGACGAAGGCGCGG
TGTTAGATGAGTTAGAACCGCTCATGGTCGACGGTGGTATCATTCTGGAT
CATCACAACTGCGATTGGTTTCCTGAAAGATGGGTGCAAATGGTAGTTTG
TTTAAGAGCAAGTACTGAAGCACTGTACGACAGACTAGAAGCGCGTGGGT
ATTCATATCTAAAGCGTAGCGGAAACATGCAAGCGGAGATCATGCAAGTT
GTTTTAGAGGAAGCTGTAACATCGTACCCCCGAGTACCCGTCATCGAACT
ACGTAATGATACCGAAGCAGAGAAACTGAGAAACATTAACGAGGTAAAGC
GCGCGTGGGGACCCGTAATGCGACGATACCGAAACCCAGGAGATAATTCA
ACAGAACATCCCGAGGGCCCAGAGGATACCGTCCACTAA
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protein sequence of Gchil2212.t1

>Gchil2212.t1 ID=Gchil2212.t1|Name=Gchil2212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=213bp
MIPGLSHEAGGSPDSSQEAPEWWPIRANMLITGTPGVGKTTLSRQLAQEL
GMRHIEIGAFARERNLLGDHDPMLNAFYMDEGAVLDELEPLMVDGGIILD
HHNCDWFPERWVQMVVCLRASTEALYDRLEARGYSYLKRSGNMQAEIMQV
VLEEAVTSYPRVPVIELRNDTEAEKLRNINEVKRAWGPVMRRYRNPGDNS
TEHPEGPEDTVH*
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mRNA from alignment at tig00000228_pilon:313049..313687+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2212.t1 ID=Gchil2212.t1|Name=Gchil2212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=639bp|location=Sequence derived from alignment at tig00000228_pilon:313049..313687+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCCCTGGTCTCTCACATGAAGCAGGCGGTTCACCCGACAGCTCGCA
AGAAGCGCCAGAATGGTGGCCAATACGAGCTAATATGCTGATCACAGGAA
CGCCGGGAGTAGGAAAAACCACGTTGAGTCGCCAACTGGCGCAGGAGCTT
GGAATGAGACACATCGAGATTGGAGCATTTGCGAGAGAAAGGAATTTGCT
AGGTGATCACGACCCAATGCTCAACGCTTTCTACATGGACGAAGGCGCGG
TGTTAGATGAGTTAGAACCGCTCATGGTCGACGGTGGTATCATTCTGGAT
CATCACAACTGCGATTGGTTTCCTGAAAGATGGGTGCAAATGGTAGTTTG
TTTAAGAGCAAGTACTGAAGCACTGTACGACAGACTAGAAGCGCGTGGGT
ATTCATATCTAAAGCGTAGCGGAAACATGCAAGCGGAGATCATGCAAGTT
GTTTTAGAGGAAGCTGTAACATCGTACCCCCGAGTACCCGTCATCGAACT
ACGTAATGATACCGAAGCAGAGAAACTGAGAAACATTAACGAGGTAAAGC
GCGCGTGGGGACCCGTAATGCGACGATACCGAAACCCAGGAGATAATTCA
ACAGAACATCCCGAGGGCCCAGAGGATACCGTCCACTAA
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Coding sequence (CDS) from alignment at tig00000228_pilon:313049..313687+

>Gchil2212.t1 ID=Gchil2212.t1|Name=Gchil2212.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=639bp|location=Sequence derived from alignment at tig00000228_pilon:313049..313687+ (Gracilaria chilensis NLEC103_M9 male)
ATGATCCCTGGTCTCTCACATGAAGCAGGCGGTTCACCCGACAGCTCGCA
AGAAGCGCCAGAATGGTGGCCAATACGAGCTAATATGCTGATCACAGGAA
CGCCGGGAGTAGGAAAAACCACGTTGAGTCGCCAACTGGCGCAGGAGCTT
GGAATGAGACACATCGAGATTGGAGCATTTGCGAGAGAAAGGAATTTGCT
AGGTGATCACGACCCAATGCTCAACGCTTTCTACATGGACGAAGGCGCGG
TGTTAGATGAGTTAGAACCGCTCATGGTCGACGGTGGTATCATTCTGGAT
CATCACAACTGCGATTGGTTTCCTGAAAGATGGGTGCAAATGGTAGTTTG
TTTAAGAGCAAGTACTGAAGCACTGTACGACAGACTAGAAGCGCGTGGGT
ATTCATATCTAAAGCGTAGCGGAAACATGCAAGCGGAGATCATGCAAGTT
GTTTTAGAGGAAGCTGTAACATCGTACCCCCGAGTACCCGTCATCGAACT
ACGTAATGATACCGAAGCAGAGAAACTGAGAAACATTAACGAGGTAAAGC
GCGCGTGGGGACCCGTAATGCGACGATACCGAAACCCAGGAGATAATTCA
ACAGAACATCCCGAGGGCCCAGAGGATACCGTCCACTAA
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