Gchil2211.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2211.t1
Unique Name	Gchil2211.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	717

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000228_pilon	contig	tig00000228_pilon:308897..311047 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMK288CT
PFAMs	Na_H_Exchanger,TrkA_N
Max annot lvl	2759\|Eukaryota
GOs	GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006810,GO:0006811,GO:0006812,GO:0006996,GO:0008150,GO:0008324,GO:0009314,GO:0009416,GO:0009507,GO:0009534,GO:0009535,GO:0009536,GO:0009579,GO:0009628,GO:0009642,GO:0009643,GO:0009657,GO:0009658,GO:0009893,GO:0009987,GO:0010109,GO:0015075,GO:0015318,GO:0016020,GO:0016043,GO:0019222,GO:0022857,GO:0022890,GO:0031323,GO:0031325,GO:0031976,GO:0031984,GO:0034220,GO:0034357,GO:0042651,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051179,GO:0051234,GO:0055035,GO:0055085,GO:0065007,GO:0071840,GO:0098655,GO:1905157
Evalue	4.82e-169
EggNOG OGs	COG0475@1\|root,KOG1650@2759\|Eukaryota
Description	solute:proton antiporter activity
COG category	P

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2211	Gchil2211	Gracilaria chilensis NLEC103_M9 male	gene	tig00000228_pilon 308897..311047 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2211.t1.start1	Gchil2211.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000228_pilon 308897..308899 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2211.t1.CDS1	Gchil2211.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000228_pilon 308897..311047 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2211.t1.exon1	Gchil2211.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000228_pilon 308897..311047 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2211.t1.stop1	Gchil2211.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000228_pilon 311045..311047 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2211.t1	Gchil2211.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000228_pilon 308897..311047 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000228_pilon:308897..311047+
coding sequence from alignment at tig00000228_pilon:308897..311047+

mRNA sequence

>Gchil2211.t1 ID=Gchil2211.t1|Name=Gchil2211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=717bp
MSTAYVIVPHPFSSARCASWQPLKRPRSALFMQSQKSSFVHRLAQTRSVP
RFPRTRPARRTLPNAIGLDSAVQGGINEALELLAATSITIPIFRRLKLSP
ILGFLVAGVALGPHGTRLIKDVEDIRTLADFGVLFLLFEMGLELSLDRLR
KLRKYAFGMGSLQVIITSLVLGLGAYAMGGTVAESAAVGSALSLSSSAFI
LQILAEKGERQSRAGVATFGILLFQDIAVVPMLVLVPFLGNTARIDLAHV
GNGTIHAIGENVKHVISVLGTLNFIVLAGGAFLKRVFRIVADSRSSEAFT
ATVLLTVLGTAMLTEELGLSMTMGSFLAGVLLAESSFRSKIKIDLEPFRG
LFLGLFFITTGMSLDVSLFFTEPMQVSFLIASLLFWKTAICTLIGLPFGL
SLAESVRVGLLLGQGGEFAFVLFALANKLGVLPDDVNSFLVTTVVASMAL
TPFLYESGIWLGRQIDKIVESSGGTVTTEATIQEVANPENNFVLICGFGP
VGRVVGKMLSRKFIRWVAVDIDVNCVRKAVDSNLPVVYGDSNRPAEFLEA
NGLSTPTAFVITISRDELVEDTLSAIRSSFPNRPVYLRAKNVKQQKEFLR
RGARAMYPESFETSLQLGQSILEGFNTSKVDIRAIKAEVRGDSGLEEAFE
EYEEWYKKNIRNPGDVEEAVESNGTARDSDLTSTGSDQQSMTQSNDGTES
TVGNGIASPRERTKGR*

spliced messenger RNA

>Gchil2211.t1 ID=Gchil2211.t1|Name=Gchil2211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2151bp|location=Sequence derived from alignment at tig00000228_pilon:308897..311047+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCACAGCCTATGTCATTGTTCCCCACCCGTTTTCCTCCGCCAGATG
TGCCTCTTGGCAGCCTCTGAAGAGGCCGCGCTCGGCTCTATTTATGCAGT
CGCAGAAGAGCTCTTTCGTACACCGCCTTGCCCAGACCAGGAGCGTACCT
CGTTTTCCCAGAACAAGACCAGCAAGACGCACGCTTCCGAATGCGATCGG
TCTTGATTCTGCTGTGCAAGGAGGTATAAATGAAGCTCTTGAACTTCTGG
CAGCTACGTCAATAACAATTCCAATATTCCGACGTCTTAAACTATCGCCA
ATTCTGGGCTTCTTGGTGGCAGGTGTCGCGCTAGGACCTCATGGCACGCG
TCTTATAAAAGATGTTGAAGACATAAGAACGCTCGCCGACTTTGGCGTAC
TTTTTCTTCTTTTTGAAATGGGTTTAGAATTATCCCTTGACCGACTGCGG
AAGCTTCGCAAGTATGCGTTTGGCATGGGATCTCTTCAGGTCATCATAAC
CTCTCTCGTATTAGGCTTAGGAGCATATGCTATGGGTGGTACCGTGGCTG
AAAGCGCCGCGGTTGGCTCCGCATTGTCTCTTTCATCCAGTGCATTTATT
TTGCAGATTCTTGCAGAGAAGGGCGAGCGACAATCTAGGGCAGGAGTGGC
TACATTTGGAATTCTTCTATTTCAAGACATCGCCGTTGTGCCAATGTTGG
TTTTAGTACCATTTCTCGGAAATACTGCCCGTATCGATCTCGCGCATGTT
GGTAATGGCACCATTCATGCAATTGGAGAAAATGTGAAACACGTCATCTC
AGTCCTCGGCACTCTTAACTTTATTGTACTTGCAGGGGGGGCTTTCTTGA
AACGAGTTTTTCGAATCGTGGCCGACAGCCGCAGCTCTGAGGCGTTCACT
GCAACCGTGCTTCTCACAGTGTTAGGAACTGCTATGCTTACCGAGGAACT
CGGTTTATCGATGACTATGGGTTCATTCTTGGCTGGAGTGCTTCTTGCCG
AAAGCTCCTTTCGATCAAAAATCAAGATAGATTTAGAGCCATTCAGAGGT
CTCTTTCTCGGTCTCTTTTTCATTACGACTGGCATGTCTCTTGATGTTTC
CTTGTTTTTCACAGAACCCATGCAGGTCAGCTTTCTGATTGCTTCCTTAC
TGTTCTGGAAGACAGCAATATGCACACTTATTGGTCTCCCGTTCGGTCTG
TCGCTGGCAGAGTCCGTGCGCGTGGGGCTTTTGCTCGGACAAGGCGGCGA
GTTCGCTTTTGTTTTATTTGCGCTAGCGAACAAGCTCGGGGTTCTACCAG
ATGATGTCAACTCGTTTTTGGTGACAACGGTTGTCGCATCCATGGCGTTG
ACGCCTTTTTTGTATGAAAGTGGAATATGGTTGGGGCGTCAAATAGACAA
GATAGTTGAATCTTCAGGCGGAACAGTGACCACAGAGGCTACAATACAGG
AGGTCGCTAATCCAGAGAACAACTTCGTGCTAATCTGTGGTTTTGGGCCT
GTTGGAAGAGTTGTGGGGAAAATGTTGTCTAGGAAGTTCATTCGCTGGGT
TGCCGTCGATATTGATGTAAATTGCGTCAGAAAAGCTGTGGATTCAAACC
TTCCTGTTGTCTACGGTGATAGTAACAGACCTGCCGAATTTTTGGAAGCA
AATGGTCTTTCTACCCCAACCGCTTTTGTTATCACAATTTCGAGGGATGA
ACTGGTTGAAGACACGCTAAGTGCAATAAGGTCAAGTTTCCCAAACCGAC
CTGTATATCTACGCGCGAAGAACGTTAAGCAACAGAAGGAGTTCTTGCGT
CGTGGGGCACGTGCCATGTATCCGGAGTCCTTCGAGACCAGTTTACAGCT
CGGACAAAGTATTCTAGAGGGCTTCAACACATCAAAAGTAGATATCAGAG
CGATTAAGGCAGAAGTAAGGGGAGACAGTGGTCTCGAAGAAGCGTTTGAA
GAGTACGAAGAATGGTATAAGAAGAACATTCGAAATCCGGGAGATGTGGA
AGAGGCTGTAGAATCAAACGGGACGGCAAGAGATAGTGATCTCACTTCCA
CAGGTTCAGACCAACAAAGTATGACGCAGAGCAACGACGGAACTGAATCT
ACAGTTGGCAATGGAATAGCGTCTCCGAGAGAACGTACAAAAGGGCGATA
A

protein sequence of Gchil2211.t1

>Gchil2211.t1 ID=Gchil2211.t1|Name=Gchil2211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=717bp
MSTAYVIVPHPFSSARCASWQPLKRPRSALFMQSQKSSFVHRLAQTRSVP
RFPRTRPARRTLPNAIGLDSAVQGGINEALELLAATSITIPIFRRLKLSP
ILGFLVAGVALGPHGTRLIKDVEDIRTLADFGVLFLLFEMGLELSLDRLR
KLRKYAFGMGSLQVIITSLVLGLGAYAMGGTVAESAAVGSALSLSSSAFI
LQILAEKGERQSRAGVATFGILLFQDIAVVPMLVLVPFLGNTARIDLAHV
GNGTIHAIGENVKHVISVLGTLNFIVLAGGAFLKRVFRIVADSRSSEAFT
ATVLLTVLGTAMLTEELGLSMTMGSFLAGVLLAESSFRSKIKIDLEPFRG
LFLGLFFITTGMSLDVSLFFTEPMQVSFLIASLLFWKTAICTLIGLPFGL
SLAESVRVGLLLGQGGEFAFVLFALANKLGVLPDDVNSFLVTTVVASMAL
TPFLYESGIWLGRQIDKIVESSGGTVTTEATIQEVANPENNFVLICGFGP
VGRVVGKMLSRKFIRWVAVDIDVNCVRKAVDSNLPVVYGDSNRPAEFLEA
NGLSTPTAFVITISRDELVEDTLSAIRSSFPNRPVYLRAKNVKQQKEFLR
RGARAMYPESFETSLQLGQSILEGFNTSKVDIRAIKAEVRGDSGLEEAFE
EYEEWYKKNIRNPGDVEEAVESNGTARDSDLTSTGSDQQSMTQSNDGTES
TVGNGIASPRERTKGR*

mRNA from alignment at tig00000228_pilon:308897..311047+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2211.t1 ID=Gchil2211.t1|Name=Gchil2211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2151bp|location=Sequence derived from alignment at tig00000228_pilon:308897..311047+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCACAGCCTATGTCATTGTTCCCCACCCGTTTTCCTCCGCCAGATG
TGCCTCTTGGCAGCCTCTGAAGAGGCCGCGCTCGGCTCTATTTATGCAGT
CGCAGAAGAGCTCTTTCGTACACCGCCTTGCCCAGACCAGGAGCGTACCT
CGTTTTCCCAGAACAAGACCAGCAAGACGCACGCTTCCGAATGCGATCGG
TCTTGATTCTGCTGTGCAAGGAGGTATAAATGAAGCTCTTGAACTTCTGG
CAGCTACGTCAATAACAATTCCAATATTCCGACGTCTTAAACTATCGCCA
ATTCTGGGCTTCTTGGTGGCAGGTGTCGCGCTAGGACCTCATGGCACGCG
TCTTATAAAAGATGTTGAAGACATAAGAACGCTCGCCGACTTTGGCGTAC
TTTTTCTTCTTTTTGAAATGGGTTTAGAATTATCCCTTGACCGACTGCGG
AAGCTTCGCAAGTATGCGTTTGGCATGGGATCTCTTCAGGTCATCATAAC
CTCTCTCGTATTAGGCTTAGGAGCATATGCTATGGGTGGTACCGTGGCTG
AAAGCGCCGCGGTTGGCTCCGCATTGTCTCTTTCATCCAGTGCATTTATT
TTGCAGATTCTTGCAGAGAAGGGCGAGCGACAATCTAGGGCAGGAGTGGC
TACATTTGGAATTCTTCTATTTCAAGACATCGCCGTTGTGCCAATGTTGG
TTTTAGTACCATTTCTCGGAAATACTGCCCGTATCGATCTCGCGCATGTT
GGTAATGGCACCATTCATGCAATTGGAGAAAATGTGAAACACGTCATCTC
AGTCCTCGGCACTCTTAACTTTATTGTACTTGCAGGGGGGGCTTTCTTGA
AACGAGTTTTTCGAATCGTGGCCGACAGCCGCAGCTCTGAGGCGTTCACT
GCAACCGTGCTTCTCACAGTGTTAGGAACTGCTATGCTTACCGAGGAACT
CGGTTTATCGATGACTATGGGTTCATTCTTGGCTGGAGTGCTTCTTGCCG
AAAGCTCCTTTCGATCAAAAATCAAGATAGATTTAGAGCCATTCAGAGGT
CTCTTTCTCGGTCTCTTTTTCATTACGACTGGCATGTCTCTTGATGTTTC
CTTGTTTTTCACAGAACCCATGCAGGTCAGCTTTCTGATTGCTTCCTTAC
TGTTCTGGAAGACAGCAATATGCACACTTATTGGTCTCCCGTTCGGTCTG
TCGCTGGCAGAGTCCGTGCGCGTGGGGCTTTTGCTCGGACAAGGCGGCGA
GTTCGCTTTTGTTTTATTTGCGCTAGCGAACAAGCTCGGGGTTCTACCAG
ATGATGTCAACTCGTTTTTGGTGACAACGGTTGTCGCATCCATGGCGTTG
ACGCCTTTTTTGTATGAAAGTGGAATATGGTTGGGGCGTCAAATAGACAA
GATAGTTGAATCTTCAGGCGGAACAGTGACCACAGAGGCTACAATACAGG
AGGTCGCTAATCCAGAGAACAACTTCGTGCTAATCTGTGGTTTTGGGCCT
GTTGGAAGAGTTGTGGGGAAAATGTTGTCTAGGAAGTTCATTCGCTGGGT
TGCCGTCGATATTGATGTAAATTGCGTCAGAAAAGCTGTGGATTCAAACC
TTCCTGTTGTCTACGGTGATAGTAACAGACCTGCCGAATTTTTGGAAGCA
AATGGTCTTTCTACCCCAACCGCTTTTGTTATCACAATTTCGAGGGATGA
ACTGGTTGAAGACACGCTAAGTGCAATAAGGTCAAGTTTCCCAAACCGAC
CTGTATATCTACGCGCGAAGAACGTTAAGCAACAGAAGGAGTTCTTGCGT
CGTGGGGCACGTGCCATGTATCCGGAGTCCTTCGAGACCAGTTTACAGCT
CGGACAAAGTATTCTAGAGGGCTTCAACACATCAAAAGTAGATATCAGAG
CGATTAAGGCAGAAGTAAGGGGAGACAGTGGTCTCGAAGAAGCGTTTGAA
GAGTACGAAGAATGGTATAAGAAGAACATTCGAAATCCGGGAGATGTGGA
AGAGGCTGTAGAATCAAACGGGACGGCAAGAGATAGTGATCTCACTTCCA
CAGGTTCAGACCAACAAAGTATGACGCAGAGCAACGACGGAACTGAATCT
ACAGTTGGCAATGGAATAGCGTCTCCGAGAGAACGTACAAAAGGGCGATA
A

Coding sequence (CDS) from alignment at tig00000228_pilon:308897..311047+

>Gchil2211.t1 ID=Gchil2211.t1|Name=Gchil2211.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2151bp|location=Sequence derived from alignment at tig00000228_pilon:308897..311047+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCACAGCCTATGTCATTGTTCCCCACCCGTTTTCCTCCGCCAGATG
TGCCTCTTGGCAGCCTCTGAAGAGGCCGCGCTCGGCTCTATTTATGCAGT
CGCAGAAGAGCTCTTTCGTACACCGCCTTGCCCAGACCAGGAGCGTACCT
CGTTTTCCCAGAACAAGACCAGCAAGACGCACGCTTCCGAATGCGATCGG
TCTTGATTCTGCTGTGCAAGGAGGTATAAATGAAGCTCTTGAACTTCTGG
CAGCTACGTCAATAACAATTCCAATATTCCGACGTCTTAAACTATCGCCA
ATTCTGGGCTTCTTGGTGGCAGGTGTCGCGCTAGGACCTCATGGCACGCG
TCTTATAAAAGATGTTGAAGACATAAGAACGCTCGCCGACTTTGGCGTAC
TTTTTCTTCTTTTTGAAATGGGTTTAGAATTATCCCTTGACCGACTGCGG
AAGCTTCGCAAGTATGCGTTTGGCATGGGATCTCTTCAGGTCATCATAAC
CTCTCTCGTATTAGGCTTAGGAGCATATGCTATGGGTGGTACCGTGGCTG
AAAGCGCCGCGGTTGGCTCCGCATTGTCTCTTTCATCCAGTGCATTTATT
TTGCAGATTCTTGCAGAGAAGGGCGAGCGACAATCTAGGGCAGGAGTGGC
TACATTTGGAATTCTTCTATTTCAAGACATCGCCGTTGTGCCAATGTTGG
TTTTAGTACCATTTCTCGGAAATACTGCCCGTATCGATCTCGCGCATGTT
GGTAATGGCACCATTCATGCAATTGGAGAAAATGTGAAACACGTCATCTC
AGTCCTCGGCACTCTTAACTTTATTGTACTTGCAGGGGGGGCTTTCTTGA
AACGAGTTTTTCGAATCGTGGCCGACAGCCGCAGCTCTGAGGCGTTCACT
GCAACCGTGCTTCTCACAGTGTTAGGAACTGCTATGCTTACCGAGGAACT
CGGTTTATCGATGACTATGGGTTCATTCTTGGCTGGAGTGCTTCTTGCCG
AAAGCTCCTTTCGATCAAAAATCAAGATAGATTTAGAGCCATTCAGAGGT
CTCTTTCTCGGTCTCTTTTTCATTACGACTGGCATGTCTCTTGATGTTTC
CTTGTTTTTCACAGAACCCATGCAGGTCAGCTTTCTGATTGCTTCCTTAC
TGTTCTGGAAGACAGCAATATGCACACTTATTGGTCTCCCGTTCGGTCTG
TCGCTGGCAGAGTCCGTGCGCGTGGGGCTTTTGCTCGGACAAGGCGGCGA
GTTCGCTTTTGTTTTATTTGCGCTAGCGAACAAGCTCGGGGTTCTACCAG
ATGATGTCAACTCGTTTTTGGTGACAACGGTTGTCGCATCCATGGCGTTG
ACGCCTTTTTTGTATGAAAGTGGAATATGGTTGGGGCGTCAAATAGACAA
GATAGTTGAATCTTCAGGCGGAACAGTGACCACAGAGGCTACAATACAGG
AGGTCGCTAATCCAGAGAACAACTTCGTGCTAATCTGTGGTTTTGGGCCT
GTTGGAAGAGTTGTGGGGAAAATGTTGTCTAGGAAGTTCATTCGCTGGGT
TGCCGTCGATATTGATGTAAATTGCGTCAGAAAAGCTGTGGATTCAAACC
TTCCTGTTGTCTACGGTGATAGTAACAGACCTGCCGAATTTTTGGAAGCA
AATGGTCTTTCTACCCCAACCGCTTTTGTTATCACAATTTCGAGGGATGA
ACTGGTTGAAGACACGCTAAGTGCAATAAGGTCAAGTTTCCCAAACCGAC
CTGTATATCTACGCGCGAAGAACGTTAAGCAACAGAAGGAGTTCTTGCGT
CGTGGGGCACGTGCCATGTATCCGGAGTCCTTCGAGACCAGTTTACAGCT
CGGACAAAGTATTCTAGAGGGCTTCAACACATCAAAAGTAGATATCAGAG
CGATTAAGGCAGAAGTAAGGGGAGACAGTGGTCTCGAAGAAGCGTTTGAA
GAGTACGAAGAATGGTATAAGAAGAACATTCGAAATCCGGGAGATGTGGA
AGAGGCTGTAGAATCAAACGGGACGGCAAGAGATAGTGATCTCACTTCCA
CAGGTTCAGACCAACAAAGTATGACGCAGAGCAACGACGGAACTGAATCT
ACAGTTGGCAATGGAATAGCGTCTCCGAGAGAACGTACAAAAGGGCGATA
A