Gchil2209.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2209.t1
Unique NameGchil2209.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length429
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:304537..305823 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMK307CT
Preferred nameTLP40
PFAMsPro_isomerase
Max annot lvl2759|Eukaryota
GOsGO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0006950,GO:0006952,GO:0008150,GO:0009507,GO:0009532,GO:0009534,GO:0009535,GO:0009536,GO:0009570,GO:0009579,GO:0009605,GO:0009607,GO:0009617,GO:0016020,GO:0031976,GO:0031977,GO:0031984,GO:0034357,GO:0042651,GO:0042742,GO:0043207,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044436,GO:0044444,GO:0044446,GO:0044464,GO:0050896,GO:0051704,GO:0051707,GO:0055035,GO:0098542
Evalue6.09e-122
EggNOG OGsCOG0652@1|root,2QSSP@2759|Eukaryota
Descriptionpeptidyl-prolyl cis-trans isomerase activity
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2209Gchil2209Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 304537..305823 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2209.t1.stop1Gchil2209.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 304537..304539 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2209.t1.CDS1Gchil2209.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 304537..305823 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2209.t1.exon1Gchil2209.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 304537..305823 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2209.t1.start1Gchil2209.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 305821..305823 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2209.t1Gchil2209.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 304537..305823 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2209.t1 ID=Gchil2209.t1|Name=Gchil2209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=429bp
MTFLPIAFSCPLAGRLSLNRRSVAPATAGKQTTVAIAGKPVVQVASTAAL
AAVAAAILSNAPVDISKLPEVALIPPAHAAKGGGASFLSASGDVIKDPES
LLRWSLPISNKPVREVQSEFEAAINDTRGLKWPKIDGDVKRAQMILKNQV
GKILLDVPEDRTDEATQLLAKVSDQLPMIETAVNEKNADKLTQNTKEVLR
NIGRVEELMVTGFPFKIPDEYLSLPRLLGRATVEMVVRKADGEPFDIEGT
IYKEGKMTIVLDGYSAPLSAGTFADLVNKGFYDQTPIIRSDGFIIQGGKP
EKGEGYVDEKSGTTRTVPLEVFAKGDKEPTYSITLEDDGRGAIGTVLPFT
SYGTLALAREEFEPNTASSQFFWFLFEPDLTPAGRNLMDGSWAVFGYTTN
GEKFLKGLQKGDRIVSAKVIDGIQHLVI*
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spliced messenger RNA

>Gchil2209.t1 ID=Gchil2209.t1|Name=Gchil2209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000228_pilon:304537..305823- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACATTTTTGCCGATTGCGTTTTCGTGCCCTCTAGCGGGACGACTGAG
CCTCAACCGTCGGTCTGTTGCTCCGGCGACAGCTGGTAAGCAAACAACAG
TTGCTATCGCTGGAAAACCGGTTGTCCAGGTGGCAAGCACGGCTGCTTTG
GCTGCTGTAGCTGCAGCCATTTTGTCCAACGCGCCAGTGGATATTTCAAA
ACTGCCGGAGGTTGCACTCATTCCCCCGGCCCATGCAGCGAAGGGTGGAG
GTGCTTCTTTTCTCAGTGCATCTGGTGATGTCATCAAGGATCCGGAATCC
TTACTCAGGTGGTCACTACCGATCTCCAACAAACCAGTGCGTGAGGTTCA
GTCTGAATTTGAAGCGGCCATAAATGATACCCGTGGACTAAAATGGCCTA
AGATAGACGGTGACGTGAAGCGTGCGCAGATGATACTTAAAAATCAGGTC
GGAAAAATATTGCTAGATGTTCCTGAGGATCGAACAGACGAAGCAACGCA
GCTACTTGCCAAAGTTTCGGATCAGCTTCCGATGATCGAAACAGCAGTCA
ATGAAAAGAACGCTGATAAACTGACTCAAAATACGAAAGAAGTGCTTCGA
AACATCGGAAGGGTGGAGGAGCTTATGGTCACTGGCTTTCCCTTTAAAAT
CCCGGATGAGTATTTGAGCCTACCTCGTTTACTGGGACGTGCAACTGTGG
AAATGGTCGTGAGAAAAGCTGACGGTGAACCGTTCGATATAGAAGGAACC
ATATACAAGGAAGGAAAAATGACCATAGTCCTGGATGGTTACTCTGCTCC
CCTTTCTGCTGGTACCTTTGCGGACTTAGTAAACAAGGGTTTCTATGATC
AGACCCCGATAATTAGGTCAGATGGATTCATAATCCAAGGCGGAAAACCC
GAAAAGGGTGAAGGATATGTTGATGAGAAAAGTGGAACGACGCGAACTGT
GCCATTGGAAGTATTCGCGAAAGGGGACAAAGAACCGACGTATAGTATCA
CACTGGAAGATGACGGACGGGGCGCCATCGGTACTGTTTTACCTTTCACG
TCCTACGGCACGTTAGCCCTGGCCAGAGAAGAATTCGAGCCGAACACTGC
GTCTAGTCAATTCTTTTGGTTTCTGTTTGAGCCAGATTTGACACCGGCTG
GGCGCAACCTAATGGATGGATCATGGGCTGTGTTTGGCTACACAACGAAT
GGGGAAAAATTCCTGAAAGGTTTGCAGAAAGGGGATCGCATTGTATCAGC
GAAGGTGATTGATGGCATCCAGCACTTGGTAATTTAG
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protein sequence of Gchil2209.t1

>Gchil2209.t1 ID=Gchil2209.t1|Name=Gchil2209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=429bp
MTFLPIAFSCPLAGRLSLNRRSVAPATAGKQTTVAIAGKPVVQVASTAAL
AAVAAAILSNAPVDISKLPEVALIPPAHAAKGGGASFLSASGDVIKDPES
LLRWSLPISNKPVREVQSEFEAAINDTRGLKWPKIDGDVKRAQMILKNQV
GKILLDVPEDRTDEATQLLAKVSDQLPMIETAVNEKNADKLTQNTKEVLR
NIGRVEELMVTGFPFKIPDEYLSLPRLLGRATVEMVVRKADGEPFDIEGT
IYKEGKMTIVLDGYSAPLSAGTFADLVNKGFYDQTPIIRSDGFIIQGGKP
EKGEGYVDEKSGTTRTVPLEVFAKGDKEPTYSITLEDDGRGAIGTVLPFT
SYGTLALAREEFEPNTASSQFFWFLFEPDLTPAGRNLMDGSWAVFGYTTN
GEKFLKGLQKGDRIVSAKVIDGIQHLVI*
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mRNA from alignment at tig00000228_pilon:304537..305823-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2209.t1 ID=Gchil2209.t1|Name=Gchil2209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1287bp|location=Sequence derived from alignment at tig00000228_pilon:304537..305823- (Gracilaria chilensis NLEC103_M9 male)
ATGACATTTTTGCCGATTGCGTTTTCGTGCCCTCTAGCGGGACGACTGAG
CCTCAACCGTCGGTCTGTTGCTCCGGCGACAGCTGGTAAGCAAACAACAG
TTGCTATCGCTGGAAAACCGGTTGTCCAGGTGGCAAGCACGGCTGCTTTG
GCTGCTGTAGCTGCAGCCATTTTGTCCAACGCGCCAGTGGATATTTCAAA
ACTGCCGGAGGTTGCACTCATTCCCCCGGCCCATGCAGCGAAGGGTGGAG
GTGCTTCTTTTCTCAGTGCATCTGGTGATGTCATCAAGGATCCGGAATCC
TTACTCAGGTGGTCACTACCGATCTCCAACAAACCAGTGCGTGAGGTTCA
GTCTGAATTTGAAGCGGCCATAAATGATACCCGTGGACTAAAATGGCCTA
AGATAGACGGTGACGTGAAGCGTGCGCAGATGATACTTAAAAATCAGGTC
GGAAAAATATTGCTAGATGTTCCTGAGGATCGAACAGACGAAGCAACGCA
GCTACTTGCCAAAGTTTCGGATCAGCTTCCGATGATCGAAACAGCAGTCA
ATGAAAAGAACGCTGATAAACTGACTCAAAATACGAAAGAAGTGCTTCGA
AACATCGGAAGGGTGGAGGAGCTTATGGTCACTGGCTTTCCCTTTAAAAT
CCCGGATGAGTATTTGAGCCTACCTCGTTTACTGGGACGTGCAACTGTGG
AAATGGTCGTGAGAAAAGCTGACGGTGAACCGTTCGATATAGAAGGAACC
ATATACAAGGAAGGAAAAATGACCATAGTCCTGGATGGTTACTCTGCTCC
CCTTTCTGCTGGTACCTTTGCGGACTTAGTAAACAAGGGTTTCTATGATC
AGACCCCGATAATTAGGTCAGATGGATTCATAATCCAAGGCGGAAAACCC
GAAAAGGGTGAAGGATATGTTGATGAGAAAAGTGGAACGACGCGAACTGT
GCCATTGGAAGTATTCGCGAAAGGGGACAAAGAACCGACGTATAGTATCA
CACTGGAAGATGACGGACGGGGCGCCATCGGTACTGTTTTACCTTTCACG
TCCTACGGCACGTTAGCCCTGGCCAGAGAAGAATTCGAGCCGAACACTGC
GTCTAGTCAATTCTTTTGGTTTCTGTTTGAGCCAGATTTGACACCGGCTG
GGCGCAACCTAATGGATGGATCATGGGCTGTGTTTGGCTACACAACGAAT
GGGGAAAAATTCCTGAAAGGTTTGCAGAAAGGGGATCGCATTGTATCAGC
GAAGGTGATTGATGGCATCCAGCACTTGGTAATTTAG
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Coding sequence (CDS) from alignment at tig00000228_pilon:304537..305823-

>Gchil2209.t1 ID=Gchil2209.t1|Name=Gchil2209.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1287bp|location=Sequence derived from alignment at tig00000228_pilon:304537..305823- (Gracilaria chilensis NLEC103_M9 male)
ATGACATTTTTGCCGATTGCGTTTTCGTGCCCTCTAGCGGGACGACTGAG
CCTCAACCGTCGGTCTGTTGCTCCGGCGACAGCTGGTAAGCAAACAACAG
TTGCTATCGCTGGAAAACCGGTTGTCCAGGTGGCAAGCACGGCTGCTTTG
GCTGCTGTAGCTGCAGCCATTTTGTCCAACGCGCCAGTGGATATTTCAAA
ACTGCCGGAGGTTGCACTCATTCCCCCGGCCCATGCAGCGAAGGGTGGAG
GTGCTTCTTTTCTCAGTGCATCTGGTGATGTCATCAAGGATCCGGAATCC
TTACTCAGGTGGTCACTACCGATCTCCAACAAACCAGTGCGTGAGGTTCA
GTCTGAATTTGAAGCGGCCATAAATGATACCCGTGGACTAAAATGGCCTA
AGATAGACGGTGACGTGAAGCGTGCGCAGATGATACTTAAAAATCAGGTC
GGAAAAATATTGCTAGATGTTCCTGAGGATCGAACAGACGAAGCAACGCA
GCTACTTGCCAAAGTTTCGGATCAGCTTCCGATGATCGAAACAGCAGTCA
ATGAAAAGAACGCTGATAAACTGACTCAAAATACGAAAGAAGTGCTTCGA
AACATCGGAAGGGTGGAGGAGCTTATGGTCACTGGCTTTCCCTTTAAAAT
CCCGGATGAGTATTTGAGCCTACCTCGTTTACTGGGACGTGCAACTGTGG
AAATGGTCGTGAGAAAAGCTGACGGTGAACCGTTCGATATAGAAGGAACC
ATATACAAGGAAGGAAAAATGACCATAGTCCTGGATGGTTACTCTGCTCC
CCTTTCTGCTGGTACCTTTGCGGACTTAGTAAACAAGGGTTTCTATGATC
AGACCCCGATAATTAGGTCAGATGGATTCATAATCCAAGGCGGAAAACCC
GAAAAGGGTGAAGGATATGTTGATGAGAAAAGTGGAACGACGCGAACTGT
GCCATTGGAAGTATTCGCGAAAGGGGACAAAGAACCGACGTATAGTATCA
CACTGGAAGATGACGGACGGGGCGCCATCGGTACTGTTTTACCTTTCACG
TCCTACGGCACGTTAGCCCTGGCCAGAGAAGAATTCGAGCCGAACACTGC
GTCTAGTCAATTCTTTTGGTTTCTGTTTGAGCCAGATTTGACACCGGCTG
GGCGCAACCTAATGGATGGATCATGGGCTGTGTTTGGCTACACAACGAAT
GGGGAAAAATTCCTGAAAGGTTTGCAGAAAGGGGATCGCATTGTATCAGC
GAAGGTGATTGATGGCATCCAGCACTTGGTAATTTAG
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