Gchil2208.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2208.t1
Unique NameGchil2208.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length243
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:303286..304014 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog6326.BUX.s00579.510
Preferred nameCAP1
PFAMsCAP_C,CAP_N
Max annot lvl33208|Metazoa
KEGG koko:K17261
GOsGO:0000003,GO:0000226,GO:0000323,GO:0000902,GO:0000904,GO:0001654,GO:0001667,GO:0001745,GO:0001751,GO:0001754,GO:0001775,GO:0002252,GO:0002263,GO:0002274,GO:0002275,GO:0002283,GO:0002366,GO:0002376,GO:0002443,GO:0002444,GO:0002446,GO:0003002,GO:0003006,GO:0003674,GO:0003779,GO:0005488,GO:0005515,GO:0005575,GO:0005576,GO:0005622,GO:0005623,GO:0005737,GO:0005764,GO:0005766,GO:0005773,GO:0005775,GO:0005829,GO:0005856,GO:0005938,GO:0006810,GO:0006887,GO:0006897,GO:0006898,GO:0006928,GO:0006935,GO:0006955,GO:0006996,GO:0007010,GO:0007015,GO:0007017,GO:0007154,GO:0007163,GO:0007165,GO:0007190,GO:0007275,GO:0007276,GO:0007281,GO:0007292,GO:0007308,GO:0007309,GO:0007389,GO:0007399,GO:0007409,GO:0007411,GO:0007423,GO:0007444,GO:0007447,GO:0007450,GO:0008092,GO:0008103,GO:0008150,GO:0008154,GO:0008179,GO:0008360,GO:0008407,GO:0009605,GO:0009653,GO:0009798,GO:0009887,GO:0009888,GO:0009953,GO:0009987,GO:0009994,GO:0012505,GO:0014069,GO:0015629,GO:0016043,GO:0016192,GO:0016325,GO:0016477,GO:0019725,GO:0019899,GO:0019953,GO:0021700,GO:0022008,GO:0022412,GO:0022414,GO:0022416,GO:0022603,GO:0022604,GO:0023052,GO:0030029,GO:0030030,GO:0030036,GO:0030141,GO:0030154,GO:0030182,GO:0030863,GO:0030864,GO:0030951,GO:0030952,GO:0031175,GO:0031279,GO:0031410,GO:0031974,GO:0031982,GO:0031983,GO:0032279,GO:0032501,GO:0032502,GO:0032504,GO:0032940,GO:0032989,GO:0032990,GO:0034774,GO:0035220,GO:0035222,GO:0035295,GO:0035578,GO:0036230,GO:0040011,GO:0042051,GO:0042052,GO:0042119,GO:0042221,GO:0042330,GO:0042461,GO:0042462,GO:0042582,GO:0042592,GO:0042802,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0043233,GO:0043299,GO:0043312,GO:0044422,GO:0044424,GO:0044430,GO:0044433,GO:0044437,GO:0044444,GO:0044446,GO:0044448,GO:0044456,GO:0044464,GO:0044703,GO:0045055,GO:0045202,GO:0045321,GO:0045761,GO:0046530,GO:0046716,GO:0046903,GO:0048190,GO:0048468,GO:0048469,GO:0048477,GO:0048513,GO:0048592,GO:0048599,GO:0048609,GO:0048666,GO:0048667,GO:0048699,GO:0048731,GO:0048749,GO:0048812,GO:0048856,GO:0048858,GO:0048869,GO:0048870,GO:0050789,GO:0050790,GO:0050793,GO:0050794,GO:0050896,GO:0051128,GO:0051179,GO:0051234,GO:0051339,GO:0051674,GO:0051704,GO:0051716,GO:0060205,GO:0060249,GO:0060429,GO:0061564,GO:0065007,GO:0065008,GO:0065009,GO:0070013,GO:0071840,GO:0071944,GO:0072499,GO:0090596,GO:0097435,GO:0097458,GO:0097485,GO:0097708,GO:0098657,GO:0098794,GO:0098984,GO:0099503,GO:0099568,GO:0099572,GO:0120036,GO:0120039
Evalue4.3e-38
EggNOG OGsKOG2675@1|root,KOG2675@2759|Eukaryota,38CGH@33154|Opisthokonta,3BET2@33208|Metazoa,3CYH0@33213|Bilateria,40BZ8@6231|Nematoda,1KUIV@119089|Chromadorea
DescriptionBelongs to the CAP family
COG categoryTZ
BRITEko00000,ko04131,ko04147
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2208Gchil2208Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 303286..304014 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2208.t1.start1Gchil2208.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 303286..303288 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2208.t1.CDS1Gchil2208.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 303286..304014 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2208.t1.exon1Gchil2208.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 303286..304014 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2208.t1.stop1Gchil2208.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 304012..304014 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2208.t1Gchil2208.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 303286..304014 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2208.t1 ID=Gchil2208.t1|Name=Gchil2208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=243bp
MSGPPAPPPPPPPPPPPAPSAGGGSGDTATALFAEINALGEKGARAGLKK
ATRGPVNDEVPSSFKPKPQPAAPSKPTTASTNKPVCELVGKKWTVEFQKD
NQEVIVDVASMKHTVYVYKCEKSIIQVKGKCNSISIDSCKKVDLVFEDAL
SQVEIVNSDSVRVQCIGNAPSINIDGCNSVTYFMSESSVEKAMVITSKSA
AINLIRPKPDDPDDIIETPVPEQFCTTFKDGEFVTEAVDHDD*
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spliced messenger RNA

>Gchil2208.t1 ID=Gchil2208.t1|Name=Gchil2208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000228_pilon:303286..304014+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTGGCccacctgccccgccaccaccaccgcccccgccaccaccacc
aGCTCCGTCTGCTGGCGGTGGCTCGGGGGACACGGCCACTGCTTTGTTCG
CCGAGATCAATGCACTCGGCGAAAAGGGCGCCCGTGCCGGGTTGAAGAAG
GCTACCCGTGGTCCGGTTAATGACGAAGTTCCATCTTCTTTCAAACCGAA
GCCACAGCCAGCTGCTCCCTCAAAGCCCACCACCGCCTCTACAAACAAGC
CTGTCTGTGAATTGGTTGGAAAGAAATGGACCGTCGAATTCCAGAAGGAT
AATCAAGAGGTAATCGTCGATGTCGCCAGCATGAAGCATACTGTTTATGT
GTACAAGTGCGAAAAATCCATCATTCAGGTCAAGGGCAAATGCAATTCTA
TCTCTATCGACTCTTGCAAGAAGGTCGACCTTGTCTTTGAGGACGCCCTT
TCGCAGGTCGAGATCGTCAACTCCGACTCTGTCCGAGTGCAATGCATCGG
CAATGCTCCCAGTATTAACATTGATGGCTGCAACAGTGTCACCTACTTCA
TGTCCGAGTCTTCTGTTGAAAAGGCCATGGTCATCACATCCAAGAGTGCA
GCTATCAATCTCATCCGCCCCAAGCCTGATGACCCAGATGATATCATTGA
AACACCTGTTCCAGAGCAGTTCTGCACCACCTTCAAGGATGGTGAGTTTG
TCACTGAGGCCGTTGACCACGATGACTAA
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protein sequence of Gchil2208.t1

>Gchil2208.t1 ID=Gchil2208.t1|Name=Gchil2208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=243bp
MSGPPAPPPPPPPPPPPAPSAGGGSGDTATALFAEINALGEKGARAGLKK
ATRGPVNDEVPSSFKPKPQPAAPSKPTTASTNKPVCELVGKKWTVEFQKD
NQEVIVDVASMKHTVYVYKCEKSIIQVKGKCNSISIDSCKKVDLVFEDAL
SQVEIVNSDSVRVQCIGNAPSINIDGCNSVTYFMSESSVEKAMVITSKSA
AINLIRPKPDDPDDIIETPVPEQFCTTFKDGEFVTEAVDHDD*
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mRNA from alignment at tig00000228_pilon:303286..304014+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2208.t1 ID=Gchil2208.t1|Name=Gchil2208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=729bp|location=Sequence derived from alignment at tig00000228_pilon:303286..304014+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGGCccacctgccccgccaccaccaccgcccccgccaccaccacc
aGCTCCGTCTGCTGGCGGTGGCTCGGGGGACACGGCCACTGCTTTGTTCG
CCGAGATCAATGCACTCGGCGAAAAGGGCGCCCGTGCCGGGTTGAAGAAG
GCTACCCGTGGTCCGGTTAATGACGAAGTTCCATCTTCTTTCAAACCGAA
GCCACAGCCAGCTGCTCCCTCAAAGCCCACCACCGCCTCTACAAACAAGC
CTGTCTGTGAATTGGTTGGAAAGAAATGGACCGTCGAATTCCAGAAGGAT
AATCAAGAGGTAATCGTCGATGTCGCCAGCATGAAGCATACTGTTTATGT
GTACAAGTGCGAAAAATCCATCATTCAGGTCAAGGGCAAATGCAATTCTA
TCTCTATCGACTCTTGCAAGAAGGTCGACCTTGTCTTTGAGGACGCCCTT
TCGCAGGTCGAGATCGTCAACTCCGACTCTGTCCGAGTGCAATGCATCGG
CAATGCTCCCAGTATTAACATTGATGGCTGCAACAGTGTCACCTACTTCA
TGTCCGAGTCTTCTGTTGAAAAGGCCATGGTCATCACATCCAAGAGTGCA
GCTATCAATCTCATCCGCCCCAAGCCTGATGACCCAGATGATATCATTGA
AACACCTGTTCCAGAGCAGTTCTGCACCACCTTCAAGGATGGTGAGTTTG
TCACTGAGGCCGTTGACCACGATGACTAA
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Coding sequence (CDS) from alignment at tig00000228_pilon:303286..304014+

>Gchil2208.t1 ID=Gchil2208.t1|Name=Gchil2208.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=729bp|location=Sequence derived from alignment at tig00000228_pilon:303286..304014+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCTGGCccacctgccccgccaccaccaccgcccccgccaccaccacc
aGCTCCGTCTGCTGGCGGTGGCTCGGGGGACACGGCCACTGCTTTGTTCG
CCGAGATCAATGCACTCGGCGAAAAGGGCGCCCGTGCCGGGTTGAAGAAG
GCTACCCGTGGTCCGGTTAATGACGAAGTTCCATCTTCTTTCAAACCGAA
GCCACAGCCAGCTGCTCCCTCAAAGCCCACCACCGCCTCTACAAACAAGC
CTGTCTGTGAATTGGTTGGAAAGAAATGGACCGTCGAATTCCAGAAGGAT
AATCAAGAGGTAATCGTCGATGTCGCCAGCATGAAGCATACTGTTTATGT
GTACAAGTGCGAAAAATCCATCATTCAGGTCAAGGGCAAATGCAATTCTA
TCTCTATCGACTCTTGCAAGAAGGTCGACCTTGTCTTTGAGGACGCCCTT
TCGCAGGTCGAGATCGTCAACTCCGACTCTGTCCGAGTGCAATGCATCGG
CAATGCTCCCAGTATTAACATTGATGGCTGCAACAGTGTCACCTACTTCA
TGTCCGAGTCTTCTGTTGAAAAGGCCATGGTCATCACATCCAAGAGTGCA
GCTATCAATCTCATCCGCCCCAAGCCTGATGACCCAGATGATATCATTGA
AACACCTGTTCCAGAGCAGTTCTGCACCACCTTCAAGGATGGTGAGTTTG
TCACTGAGGCCGTTGACCACGATGACTAA
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