Gchil2207.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2207.t1
Unique NameGchil2207.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length630
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:300620..302588 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005705323.1
PFAMsBRAP2,zf-RING_2,zf-UBP
Max annot lvl2759|Eukaryota
KEGG koko:K00413,ko:K10632
KEGG Pathwayko00190,ko01100,ko02020,ko04014,ko04260,ko04714,ko04932,ko05010,ko05012,ko05016,map00190,map01100,map02020,map04014,map04260,map04714,map04932,map05010,map05012,map05016
KEGG ModuleM00151,M00152
GOsGO:0003674,GO:0003824,GO:0004842,GO:0005048,GO:0005488,GO:0005515,GO:0006464,GO:0006807,GO:0008139,GO:0008150,GO:0008152,GO:0008270,GO:0009636,GO:0009987,GO:0010033,GO:0016567,GO:0016740,GO:0019538,GO:0019787,GO:0023051,GO:0032182,GO:0032446,GO:0033218,GO:0036211,GO:0042221,GO:0042277,GO:0042493,GO:0043130,GO:0043167,GO:0043169,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0045471,GO:0046677,GO:0046872,GO:0046914,GO:0050789,GO:0050896,GO:0061630,GO:0061659,GO:0065007,GO:0070647,GO:0071704,GO:0097305,GO:0140096,GO:1901564,GO:1901700
Evalue1.54e-58
EggNOG OGsKOG0804@1|root,KOG0804@2759|Eukaryota
EC2.3.2.27
Descriptionnuclear localization sequence binding
COG categoryGO
BRITEko00000,ko00001,ko00002,ko01000,ko04121
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2207Gchil2207Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 300620..302588 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2207.t1Gchil2207.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 300620..302588 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2207.t1.stop1Gchil2207.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 300620..300622 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2207.t1.CDS1Gchil2207.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 300620..302110 -
Gchil2207.t1.CDS2Gchil2207.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 302190..302588 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2207.t1.exon1Gchil2207.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 300620..302110 -
Gchil2207.t1.exon2Gchil2207.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 302190..302588 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2207.t1.intron1Gchil2207.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 302111..302189 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2207.t1.start1Gchil2207.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 302586..302588 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2207.t1 ID=Gchil2207.t1|Name=Gchil2207.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=630bp
MLAPGLRPDIPLTRTCREYLRNKVTSRSHSKRASAKIQAPREAPEAPEAL
LTIPPPQVPQTDALAGFVSPTAVAKGYAFYLASVAPPNIRTSFPPHGFYH
RVHMKPRIDNTFSGSYTNVITGLATPHRVATRPTQPTNSKPPEQAPPAYE
IIAFETGNPETHSTIHGTLGLAPVSNTSSVIVVESVPGLMTSPDFCIFVR
PFFDTILFIRPLRLQTEQNRYIVIVKFRTPPQAADFAKAYDGKHFLQGLV
QETCILRTVNTIRFDEAPQAPSFPASSMFPEEEAEELHSSCPVCLDPLDA
SSKALVTTFCNHTMHAVCLAQWDSNRCPVCRHIHELTPEASTCMNCNNRE
DLWMCIVCAYVGCGFYKKKHAHAHFAETQHPFAMNLEDCIFWSGEKVPQG
SVWDYVSERFVNRLLSSDDGKVVEVVHDVARGDAGASSSSAAAAACCSAN
EGIGIVEDEQDRALQAAVYASRMDAVVDEYRTKLERMETDHEAEKSKYTQ
EISSLQTELSHLHRLRKTFHKKSVETEKEMKSLKDKNAFLKSLNETLLRD
KQAWSAEVEKLNVHLAGLKTEKQALEEQLRDLMMHLEAQSKIVGSTEACR
SDISELHGGDVVRVGPSPRERLAMKTSRR*
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spliced messenger RNA

>Gchil2207.t1 ID=Gchil2207.t1|Name=Gchil2207.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1890bp|location=Sequence derived from alignment at tig00000228_pilon:300620..302588- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCACCCGGTCTACGCCCCGATATTCCACTCACACGCACATGTCG
CGAATATCTTCGAAACAAGGTCACCTCGCGTTCCCACTCTAAACGGGCAT
CAGCGAAGATTCAAGCTCCTCGGGAAGCCCCGGAAGCCCCGGAAGCCCTT
CTCACTATCCCGCCTCCACAAGTACCTCAGACGGACGCGCTTGCCGGCTT
CGTTTCGCCCACCGCCGTCGCGAAGGGGTACGCATTCTATTTGGCTTCCG
TCGCCCCTCCAAATATCCGTACAAGCTTCCCGCCACACGGCTTCTACCAT
CGTGTTCACATGAAACCGCGAATAGACAACACGTTTTCAGGTTCTTACAC
AAATGTCATCACAGGCCTCGCAACCCCGCATCGAGTCGCAACCCGCCCGA
CGCAACCGACCAACTCCAAACCCCCCGAACAAGCTCCCCCTGCTTACGAA
ATCATAGCCTTTGAGACAGGAAACCCGGAGACTCACTCTACGATTCATGG
CACCCTCGGTTTAGCGCCTGTGTCCAATACCTCTTCAGTAATTGTTGTCG
AATCAGTTCCAGGGTTGATGACATCTCCGGACTTTTGCATATTTGTACGC
CCTTTTTTTGACACTATTCTGTTCATCCGTCCTTTGCGTTTGCAAACCGA
ACAAAATCGCTACATAGTCATCGTCAAATTCCGAACTCCTCCGCAAGCCG
CCGACTTTGCGAAAGCATATGATGGAAAACACTTCCTACAGGGTCTAGTT
CAAGAGACCTGCATTCTTCGCACCGTCAATACTATACGGTTTGATGAAGC
TCCTCAAGCTCCCAGTTTCCCGGCGTCGTCTATGTTTCCGGAAGAGGAAG
CTGAGGAACTACATTCGTCCTGCCCGGTCTGTCTAGATCCACTTGATGCA
AGCTCTAAAGCTCTTGTAACTACATTCTGTAACCACACCATGCATGCTGT
TTGCTTGGCGCAATGGGATTCGAATAGATGCCCCGTGTGTCGACATATAC
ATGAACTTACCCCTGAGGCGTCAACGTGCATGAACTGTAACAACAGGGAA
GACCTCTGGATGTGCATTGTATGTGCTTATGTTGGGTGTGGCTTTTACAA
GAAGAAACATGCCCATGCACACTTTGCGGAGACGCAGCATCCATTCGCCA
TGAATCTGGAGGACTGTATCTTTTGGAGCGGCGAAAAAGTTCCCCAGGGA
TCCGTGTGGGACTATGTATCTGAGAGATTTGTCAATCGGTTGTTGAGTAG
CGATGATGGTAAAGTAGTCGAAGTCGTTCATGACGTCGCGCGAGGCGATG
CGGGTGCGTCGAGTTCATCAGCTGCTGCTGCTGCTTGCTGTTCTGCGAAC
GAGGGAATTGGTATCGTCGAAGATGAGCAGGACCGGGCGTTACAGGCTGC
GGTCTATGCGAGTCGTATGGACGCTGTTGTCGATGAATATCGCACGAAGT
TGGAACGGATGGAAACAGATCATGAAGCGGAAAAGTCCAAGTACACACAG
GAGATTAGCAGTCTTCAAACCGAACTGTCGCACCTTCACAGGTTACGAAA
GACTTTCCATAAGAAGTCCGTAGAAACAGAAAAGGAAATGAAAAGCCTCA
AAGACAAGAATGCTTTTCTCAAAAGCTTGAACGAAACTCTGCTCAGAGAT
AAACAAGCATGGAGCGCGGAAGTAGAGAAACTGAATGTACATTTGGCAGG
CCTAAAAACTGAGAAACAAGCACTTGAAGAGCAGTTGAGAGATCTCATGA
TGCACTTGGAAGCACAGTCAAAAATTGTTGGCTCTACTGAGGCATGTCGG
TCAGATATATCCGAACTACATGGGGGTGACGTAGTGCGTGTTGGGCCATC
TCCGCGCGAGCGTTTGGCAATGAAAACAAGTCGACGCTAA
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protein sequence of Gchil2207.t1

>Gchil2207.t1 ID=Gchil2207.t1|Name=Gchil2207.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=630bp
MLAPGLRPDIPLTRTCREYLRNKVTSRSHSKRASAKIQAPREAPEAPEAL
LTIPPPQVPQTDALAGFVSPTAVAKGYAFYLASVAPPNIRTSFPPHGFYH
RVHMKPRIDNTFSGSYTNVITGLATPHRVATRPTQPTNSKPPEQAPPAYE
IIAFETGNPETHSTIHGTLGLAPVSNTSSVIVVESVPGLMTSPDFCIFVR
PFFDTILFIRPLRLQTEQNRYIVIVKFRTPPQAADFAKAYDGKHFLQGLV
QETCILRTVNTIRFDEAPQAPSFPASSMFPEEEAEELHSSCPVCLDPLDA
SSKALVTTFCNHTMHAVCLAQWDSNRCPVCRHIHELTPEASTCMNCNNRE
DLWMCIVCAYVGCGFYKKKHAHAHFAETQHPFAMNLEDCIFWSGEKVPQG
SVWDYVSERFVNRLLSSDDGKVVEVVHDVARGDAGASSSSAAAAACCSAN
EGIGIVEDEQDRALQAAVYASRMDAVVDEYRTKLERMETDHEAEKSKYTQ
EISSLQTELSHLHRLRKTFHKKSVETEKEMKSLKDKNAFLKSLNETLLRD
KQAWSAEVEKLNVHLAGLKTEKQALEEQLRDLMMHLEAQSKIVGSTEACR
SDISELHGGDVVRVGPSPRERLAMKTSRR*
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mRNA from alignment at tig00000228_pilon:300620..302588-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2207.t1 ID=Gchil2207.t1|Name=Gchil2207.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1969bp|location=Sequence derived from alignment at tig00000228_pilon:300620..302588- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGCACCCGGTCTACGCCCCGATATTCCACTCACACGCACATGTCG
CGAATATCTTCGAAACAAGGTCACCTCGCGTTCCCACTCTAAACGGGCAT
CAGCGAAGATTCAAGCTCCTCGGGAAGCCCCGGAAGCCCCGGAAGCCCTT
CTCACTATCCCGCCTCCACAAGTACCTCAGACGGACGCGCTTGCCGGCTT
CGTTTCGCCCACCGCCGTCGCGAAGGGGTACGCATTCTATTTGGCTTCCG
TCGCCCCTCCAAATATCCGTACAAGCTTCCCGCCACACGGCTTCTACCAT
CGTGTTCACATGAAACCGCGAATAGACAACACGTTTTCAGGTTCTTACAC
AAATGTCATCACAGGCCTCGCAACCCCGCATCGAGTCGCAACCCGCCCGG
TCAGATGAGCAACCACGCCGAACGAACCCATTTGTCGCAAACCCTTCCAC
GGTGCTTCCGCCTTCTGCACCGCCCCAGACGCAACCGACCAACTCCAAAC
CCCCCGAACAAGCTCCCCCTGCTTACGAAATCATAGCCTTTGAGACAGGA
AACCCGGAGACTCACTCTACGATTCATGGCACCCTCGGTTTAGCGCCTGT
GTCCAATACCTCTTCAGTAATTGTTGTCGAATCAGTTCCAGGGTTGATGA
CATCTCCGGACTTTTGCATATTTGTACGCCCTTTTTTTGACACTATTCTG
TTCATCCGTCCTTTGCGTTTGCAAACCGAACAAAATCGCTACATAGTCAT
CGTCAAATTCCGAACTCCTCCGCAAGCCGCCGACTTTGCGAAAGCATATG
ATGGAAAACACTTCCTACAGGGTCTAGTTCAAGAGACCTGCATTCTTCGC
ACCGTCAATACTATACGGTTTGATGAAGCTCCTCAAGCTCCCAGTTTCCC
GGCGTCGTCTATGTTTCCGGAAGAGGAAGCTGAGGAACTACATTCGTCCT
GCCCGGTCTGTCTAGATCCACTTGATGCAAGCTCTAAAGCTCTTGTAACT
ACATTCTGTAACCACACCATGCATGCTGTTTGCTTGGCGCAATGGGATTC
GAATAGATGCCCCGTGTGTCGACATATACATGAACTTACCCCTGAGGCGT
CAACGTGCATGAACTGTAACAACAGGGAAGACCTCTGGATGTGCATTGTA
TGTGCTTATGTTGGGTGTGGCTTTTACAAGAAGAAACATGCCCATGCACA
CTTTGCGGAGACGCAGCATCCATTCGCCATGAATCTGGAGGACTGTATCT
TTTGGAGCGGCGAAAAAGTTCCCCAGGGATCCGTGTGGGACTATGTATCT
GAGAGATTTGTCAATCGGTTGTTGAGTAGCGATGATGGTAAAGTAGTCGA
AGTCGTTCATGACGTCGCGCGAGGCGATGCGGGTGCGTCGAGTTCATCAG
CTGCTGCTGCTGCTTGCTGTTCTGCGAACGAGGGAATTGGTATCGTCGAA
GATGAGCAGGACCGGGCGTTACAGGCTGCGGTCTATGCGAGTCGTATGGA
CGCTGTTGTCGATGAATATCGCACGAAGTTGGAACGGATGGAAACAGATC
ATGAAGCGGAAAAGTCCAAGTACACACAGGAGATTAGCAGTCTTCAAACC
GAACTGTCGCACCTTCACAGGTTACGAAAGACTTTCCATAAGAAGTCCGT
AGAAACAGAAAAGGAAATGAAAAGCCTCAAAGACAAGAATGCTTTTCTCA
AAAGCTTGAACGAAACTCTGCTCAGAGATAAACAAGCATGGAGCGCGGAA
GTAGAGAAACTGAATGTACATTTGGCAGGCCTAAAAACTGAGAAACAAGC
ACTTGAAGAGCAGTTGAGAGATCTCATGATGCACTTGGAAGCACAGTCAA
AAATTGTTGGCTCTACTGAGGCATGTCGGTCAGATATATCCGAACTACAT
GGGGGTGACGTAGTGCGTGTTGGGCCATCTCCGCGCGAGCGTTTGGCAAT
GAAAACAAGTCGACGCTAA
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Coding sequence (CDS) from alignment at tig00000228_pilon:300620..302588-

>Gchil2207.t1 ID=Gchil2207.t1|Name=Gchil2207.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1890bp|location=Sequence derived from alignment at tig00000228_pilon:300620..302588- (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGCACCCGGTCTACGCCCCGATATTCCACTCACACGCACATGTCG
CGAATATCTTCGAAACAAGGTCACCTCGCGTTCCCACTCTAAACGGGCAT
CAGCGAAGATTCAAGCTCCTCGGGAAGCCCCGGAAGCCCCGGAAGCCCTT
CTCACTATCCCGCCTCCACAAGTACCTCAGACGGACGCGCTTGCCGGCTT
CGTTTCGCCCACCGCCGTCGCGAAGGGGTACGCATTCTATTTGGCTTCCG
TCGCCCCTCCAAATATCCGTACAAGCTTCCCGCCACACGGCTTCTACCAT
CGTGTTCACATGAAACCGCGAATAGACAACACGTTTTCAGGTTCTTACAC
AAATGTCATCACAGGCCTCGCAACCCCGCATCGAGTCGCAACCCGCCCGA
CGCAACCGACCAACTCCAAACCCCCCGAACAAGCTCCCCCTGCTTACGAA
ATCATAGCCTTTGAGACAGGAAACCCGGAGACTCACTCTACGATTCATGG
CACCCTCGGTTTAGCGCCTGTGTCCAATACCTCTTCAGTAATTGTTGTCG
AATCAGTTCCAGGGTTGATGACATCTCCGGACTTTTGCATATTTGTACGC
CCTTTTTTTGACACTATTCTGTTCATCCGTCCTTTGCGTTTGCAAACCGA
ACAAAATCGCTACATAGTCATCGTCAAATTCCGAACTCCTCCGCAAGCCG
CCGACTTTGCGAAAGCATATGATGGAAAACACTTCCTACAGGGTCTAGTT
CAAGAGACCTGCATTCTTCGCACCGTCAATACTATACGGTTTGATGAAGC
TCCTCAAGCTCCCAGTTTCCCGGCGTCGTCTATGTTTCCGGAAGAGGAAG
CTGAGGAACTACATTCGTCCTGCCCGGTCTGTCTAGATCCACTTGATGCA
AGCTCTAAAGCTCTTGTAACTACATTCTGTAACCACACCATGCATGCTGT
TTGCTTGGCGCAATGGGATTCGAATAGATGCCCCGTGTGTCGACATATAC
ATGAACTTACCCCTGAGGCGTCAACGTGCATGAACTGTAACAACAGGGAA
GACCTCTGGATGTGCATTGTATGTGCTTATGTTGGGTGTGGCTTTTACAA
GAAGAAACATGCCCATGCACACTTTGCGGAGACGCAGCATCCATTCGCCA
TGAATCTGGAGGACTGTATCTTTTGGAGCGGCGAAAAAGTTCCCCAGGGA
TCCGTGTGGGACTATGTATCTGAGAGATTTGTCAATCGGTTGTTGAGTAG
CGATGATGGTAAAGTAGTCGAAGTCGTTCATGACGTCGCGCGAGGCGATG
CGGGTGCGTCGAGTTCATCAGCTGCTGCTGCTGCTTGCTGTTCTGCGAAC
GAGGGAATTGGTATCGTCGAAGATGAGCAGGACCGGGCGTTACAGGCTGC
GGTCTATGCGAGTCGTATGGACGCTGTTGTCGATGAATATCGCACGAAGT
TGGAACGGATGGAAACAGATCATGAAGCGGAAAAGTCCAAGTACACACAG
GAGATTAGCAGTCTTCAAACCGAACTGTCGCACCTTCACAGGTTACGAAA
GACTTTCCATAAGAAGTCCGTAGAAACAGAAAAGGAAATGAAAAGCCTCA
AAGACAAGAATGCTTTTCTCAAAAGCTTGAACGAAACTCTGCTCAGAGAT
AAACAAGCATGGAGCGCGGAAGTAGAGAAACTGAATGTACATTTGGCAGG
CCTAAAAACTGAGAAACAAGCACTTGAAGAGCAGTTGAGAGATCTCATGA
TGCACTTGGAAGCACAGTCAAAAATTGTTGGCTCTACTGAGGCATGTCGG
TCAGATATATCCGAACTACATGGGGGTGACGTAGTGCGTGTTGGGCCATC
TCCGCGCGAGCGTTTGGCAATGAAAACAAGTCGACGCTAA
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