Gchil2205.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2205.t1
Unique NameGchil2205.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:298600..299289 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog36080.S2JHK2
Preferred nameCAB5
PFAMsCoaE
Max annot lvl4751|Fungi
KEGG rclassRC00002,RC00078
KEGG koko:K00859
KEGG ReactionR00130
KEGG Pathwayko00770,ko01100,map00770,map01100
KEGG ModuleM00120
GOsGO:0000166,GO:0003674,GO:0003824,GO:0004140,GO:0005488,GO:0005524,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005635,GO:0005737,GO:0005739,GO:0005783,GO:0005811,GO:0005829,GO:0006139,GO:0006163,GO:0006164,GO:0006725,GO:0006732,GO:0006753,GO:0006793,GO:0006796,GO:0006807,GO:0008144,GO:0008150,GO:0008152,GO:0009058,GO:0009108,GO:0009117,GO:0009150,GO:0009152,GO:0009165,GO:0009259,GO:0009260,GO:0009987,GO:0012505,GO:0015936,GO:0015937,GO:0016301,GO:0016310,GO:0016740,GO:0016772,GO:0016773,GO:0017076,GO:0018130,GO:0019438,GO:0019637,GO:0019693,GO:0030554,GO:0031967,GO:0031975,GO:0032553,GO:0032555,GO:0032559,GO:0032991,GO:0033865,GO:0033866,GO:0033875,GO:0034030,GO:0034032,GO:0034033,GO:0034641,GO:0034654,GO:0035639,GO:0036094,GO:0043167,GO:0043168,GO:0043226,GO:0043227,GO:0043228,GO:0043229,GO:0043231,GO:0043232,GO:0044237,GO:0044238,GO:0044249,GO:0044271,GO:0044281,GO:0044422,GO:0044424,GO:0044428,GO:0044444,GO:0044446,GO:0044464,GO:0046390,GO:0046483,GO:0051186,GO:0051188,GO:0055086,GO:0071704,GO:0072521,GO:0072522,GO:0090407,GO:0097159,GO:0097367,GO:1901135,GO:1901137,GO:1901265,GO:1901293,GO:1901360,GO:1901362,GO:1901363,GO:1901564,GO:1901566,GO:1901576,GO:1990143
Evalue1.01e-53
EggNOG OGsCOG0237@1|root,KOG3220@2759|Eukaryota,38DFB@33154|Opisthokonta,3NWXJ@4751|Fungi,1GTWK@112252|Fungi incertae sedis
EC2.7.1.24
DescriptionDephospho-CoA kinase
COG categoryG
BRITEko00000,ko00001,ko00002,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2205Gchil2205Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 298600..299289 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2205.t1.stop1Gchil2205.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 298600..298602 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2205.t1.CDS1Gchil2205.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 298600..299289 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2205.t1.exon1Gchil2205.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 298600..299289 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2205.t1.start1Gchil2205.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 299287..299289 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2205.t1Gchil2205.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 298600..299289 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2205.t1 ID=Gchil2205.t1|Name=Gchil2205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=230bp
MPKIIGLTGGIATGKSTVSAIWRSRDITIIDADKIARDVVQPGKPAYWLL
KRHFGPSVFNPDGTLNRPKLGKLVFSDPRQRNALNLRTHPFIMFGMLSQL
FVAVFIKWKPIIVLDTPLLFESGTLLPFCSATVVVSCSPQQQLERLVRRD
SGQGMTEEEAKRRIGSQMSLDEKKKRAKFVIDNTGNEIQLQNNAINTLDR
LKPSKAGEIALRGLVLAALGNVLFRLFQQ*
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spliced messenger RNA

>Gchil2205.t1 ID=Gchil2205.t1|Name=Gchil2205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000228_pilon:298600..299289- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGAAGATCATAGGGTTGACGGGAGGGATTGCAACTGGAAAATCGAC
AGTATCTGCGATATGGAGGTCCAGAGACATCACCATCATTGATGCGGACA
AAATAGCTCGAGATGTAGTGCAACCGGGAAAACCAGCGTATTGGCTGTTA
AAACGCCACTTCGGGCCTTCGGTATTCAATCCAGACGGCACATTAAATCG
CCCAAAGCTAGGAAAACTTGTCTTTTCAGACCCTAGACAGCGAAATGCTT
TGAATCTGCGAACGCACCCTTTTATTATGTTTGGAATGCTTTCACAGCTG
TTTGTTGCAGTCTTCATCAAGTGGAAACCCATAATTGTCCTGGATACCCC
CTTACTTTTTGAAAGTGGCACCCTCCTTCCCTTTTGTTCGGCAACGGTGG
TCGTAAGTTGCAGTCCGCAGCAGCAGCTAGAAAGATTAGTGCGACGAGAC
TCAGGTCAAGGCATGACTGAAGAAGAAGCGAAAAGAAGAATAGGAAGTCA
GATGTCTCTTGATGAAAAGAAGAAGCGAGCGAAATTCGTCATTGACAATA
CAGGAAATGAGATTCAGCTACAAAACAATGCGATCAATACATTAGATCGA
CTGAAACCATCAAAGGCTGGTGAAATAGCTCTTCGTGGTCTGGTTCTTGC
TGCATTGGGAAACGTTTTATTTCGACTTTTTCAGCAATGA
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protein sequence of Gchil2205.t1

>Gchil2205.t1 ID=Gchil2205.t1|Name=Gchil2205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=230bp
MPKIIGLTGGIATGKSTVSAIWRSRDITIIDADKIARDVVQPGKPAYWLL
KRHFGPSVFNPDGTLNRPKLGKLVFSDPRQRNALNLRTHPFIMFGMLSQL
FVAVFIKWKPIIVLDTPLLFESGTLLPFCSATVVVSCSPQQQLERLVRRD
SGQGMTEEEAKRRIGSQMSLDEKKKRAKFVIDNTGNEIQLQNNAINTLDR
LKPSKAGEIALRGLVLAALGNVLFRLFQQ*
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mRNA from alignment at tig00000228_pilon:298600..299289-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2205.t1 ID=Gchil2205.t1|Name=Gchil2205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000228_pilon:298600..299289- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGAAGATCATAGGGTTGACGGGAGGGATTGCAACTGGAAAATCGAC
AGTATCTGCGATATGGAGGTCCAGAGACATCACCATCATTGATGCGGACA
AAATAGCTCGAGATGTAGTGCAACCGGGAAAACCAGCGTATTGGCTGTTA
AAACGCCACTTCGGGCCTTCGGTATTCAATCCAGACGGCACATTAAATCG
CCCAAAGCTAGGAAAACTTGTCTTTTCAGACCCTAGACAGCGAAATGCTT
TGAATCTGCGAACGCACCCTTTTATTATGTTTGGAATGCTTTCACAGCTG
TTTGTTGCAGTCTTCATCAAGTGGAAACCCATAATTGTCCTGGATACCCC
CTTACTTTTTGAAAGTGGCACCCTCCTTCCCTTTTGTTCGGCAACGGTGG
TCGTAAGTTGCAGTCCGCAGCAGCAGCTAGAAAGATTAGTGCGACGAGAC
TCAGGTCAAGGCATGACTGAAGAAGAAGCGAAAAGAAGAATAGGAAGTCA
GATGTCTCTTGATGAAAAGAAGAAGCGAGCGAAATTCGTCATTGACAATA
CAGGAAATGAGATTCAGCTACAAAACAATGCGATCAATACATTAGATCGA
CTGAAACCATCAAAGGCTGGTGAAATAGCTCTTCGTGGTCTGGTTCTTGC
TGCATTGGGAAACGTTTTATTTCGACTTTTTCAGCAATGA
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Coding sequence (CDS) from alignment at tig00000228_pilon:298600..299289-

>Gchil2205.t1 ID=Gchil2205.t1|Name=Gchil2205.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000228_pilon:298600..299289- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGAAGATCATAGGGTTGACGGGAGGGATTGCAACTGGAAAATCGAC
AGTATCTGCGATATGGAGGTCCAGAGACATCACCATCATTGATGCGGACA
AAATAGCTCGAGATGTAGTGCAACCGGGAAAACCAGCGTATTGGCTGTTA
AAACGCCACTTCGGGCCTTCGGTATTCAATCCAGACGGCACATTAAATCG
CCCAAAGCTAGGAAAACTTGTCTTTTCAGACCCTAGACAGCGAAATGCTT
TGAATCTGCGAACGCACCCTTTTATTATGTTTGGAATGCTTTCACAGCTG
TTTGTTGCAGTCTTCATCAAGTGGAAACCCATAATTGTCCTGGATACCCC
CTTACTTTTTGAAAGTGGCACCCTCCTTCCCTTTTGTTCGGCAACGGTGG
TCGTAAGTTGCAGTCCGCAGCAGCAGCTAGAAAGATTAGTGCGACGAGAC
TCAGGTCAAGGCATGACTGAAGAAGAAGCGAAAAGAAGAATAGGAAGTCA
GATGTCTCTTGATGAAAAGAAGAAGCGAGCGAAATTCGTCATTGACAATA
CAGGAAATGAGATTCAGCTACAAAACAATGCGATCAATACATTAGATCGA
CTGAAACCATCAAAGGCTGGTGAAATAGCTCTTCGTGGTCTGGTTCTTGC
TGCATTGGGAAACGTTTTATTTCGACTTTTTCAGCAATGA
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