Gchil2203.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2203.t1
Unique NameGchil2203.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length471
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:292849..294261 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707127.1
PFAMsAbhydrolase_3,Pyr_redox_2
Max annot lvl2759|Eukaryota
KEGG koko:K03885,ko:K17871,ko:K17872
KEGG Pathwayko00190,map00190
GOsGO:0003674,GO:0003824,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0006091,GO:0008150,GO:0008152,GO:0009060,GO:0009314,GO:0009416,GO:0009507,GO:0009532,GO:0009536,GO:0009570,GO:0009628,GO:0009987,GO:0010287,GO:0015980,GO:0016491,GO:0019646,GO:0022900,GO:0022904,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044237,GO:0044422,GO:0044424,GO:0044434,GO:0044435,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0050896,GO:0051716,GO:0055114,GO:0071214,GO:0071478,GO:0071482,GO:0104004
Evalue7.58e-101
EggNOG OGsCOG1252@1|root,KOG2495@2759|Eukaryota
EC1.6.5.9,1.6.99.3
DescriptionOxidoreductase
COG categoryC
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2203Gchil2203Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 292849..294261 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2203.t1.stop1Gchil2203.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 292849..292851 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2203.t1.CDS1Gchil2203.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 292849..294261 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2203.t1.exon1Gchil2203.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 292849..294261 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2203.t1.start1Gchil2203.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 294259..294261 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2203.t1Gchil2203.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 292849..294261 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2203.t1 ID=Gchil2203.t1|Name=Gchil2203.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=471bp
MERVRGYMGFAIASKLGATPQFARYGLLRVPNYSRTRPNTTKAVLRPNIA
IVGGGHGGLSVALRLITLPWTRLTKPKITVIDKSPRFCFVPMLYELALGQ
VEQWEIAPKFEDLLQDTSIEFLQGEVDGLDLQKKTIQGICFGKNNNNPFH
LSYDRAVLAMGAEPLNLDSVPGADEFAIPFYNLSHANRLKHKLKDVKQKR
RSGDITNIIVVGGGFSGVELASCLAEELGSSGSVMIVEPSDRVLSKGTTF
NRKTSEKTLSSNGVAVEYLSRVSAITEETVEIRRKQDAEDVDYETLEYPY
DIVLWTAGSRPSTIQQDFGLQIDSKGRLVTDSMLQVEGYHDCLYALGDGC
LAPPNDGYYGTAQVATQQAEYVAWNVWASLTDNPKLRFSYTHLGEMMVLG
SMDASVTTSPGPELDGKVAWAARRLAYLLRMPTDNHRRKVAASWAAHPLL
SKMEGLAKNSGNTSANTRFQ*
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spliced messenger RNA

>Gchil2203.t1 ID=Gchil2203.t1|Name=Gchil2203.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000228_pilon:292849..294261- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGAGAGTTCGTGGATATATGGGTTTCGCTATAGCCTCAAAGCTTGG
TGCTACCCCACAATTCGCGCGCTACGGATTGCTGAGGGTGCCCAACTATT
CAAGAACACGGCCCAACACGACAAAGGCTGTCTTGAGGCCGAACATCGCG
ATCGTTGGGGGTGGTCATGGAGGCCTCTCTGTGGCTTTACGGCTGATTAC
GCTACCATGGACTCGACTCACGAAACCTAAAATTACCGTTATAGACAAAT
CACCCCGTTTTTGCTTCGTTCCAATGCTTTACGAACTCGCGTTGGGTCAG
GTTGAGCAATGGGAAATCGCACCAAAGTTTGAAGACCTACTGCAGGATAC
ATCGATTGAATTTTTACAGGGTGAGGTAGATGGACTCGACCTGCAGAAAA
AAACAATACAAGGTATCTGTTTTGGGAAAAACAATAACAACCCGTTCCAT
TTATCCTATGACCGAGCTGTGCTTGCTATGGGCGCCGAACCCCTTAATCT
TGATTCCGTTCCAGGAGCTGATGAGTTCGCCATACCATTTTATAACCTGT
CGCATGCGAACCGTTTGAAGCATAAACTTAAAGATGTAAAACAGAAAAGG
CGAAGCGGAGATATTACGAACATCATTGTCGTTGGAGGAGGCTTTAGTGG
AGTGGAACTTGCATCTTGTTTGGCTGAAGAGCTGGGTTCTTCGGGAAGTG
TAATGATAGTCGAACCCTCAGATCGTGTCCTGTCAAAGGGTACAACATTT
AACAGAAAAACCTCAGAAAAGACACTATCTTCCAACGGCGTGGCTGTCGA
ATACCTTTCCAGAGTAAGTGCTATCACGGAGGAAACTGTCGAAATTCGAA
GGAAGCAAGATGCTGAAGATGTGGATTATGAAACTCTGGAATATCCTTAT
GATATCGTATTATGGACAGCTGGGAGTAGACCGAGCACAATTCAACAGGA
CTTTGGACTGCAAATCGATTCGAAAGGGCGATTAGTAACTGACAGCATGC
TTCAGGTCGAAGGATACCACGATTGTTTGTATGCATTAGGAGATGGATGC
TTAGCCCCGCCTAATGATGGGTATTATGGCACAGCACAGGTTGCTACTCA
ACAAGCAGAGTATGTTGCGTGGAACGTTTGGGCGTCCCTTACCGATAATC
CAAAACTTCGGTTCAGCTACACTCATCTTGGAGAAATGATGGTTTTGGGC
TCGATGGATGCATCGGTTACTACATCCCCAGGACCAGAGCTCGATGGGAA
AGTTGCGTGGGCTGCAAGGCGTTTAGCTTACCTTCTTAGGATGCCCACTG
ATAATCATCGTAGAAAAGTAGCTGCAAGTTGGGCGGCACATCCCTTACTG
TCGAAGATGGAGGGTTTAGCAAAGAATTCTGGAAATACTTCTGCAAATAC
ACGGTTTCAATAG
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protein sequence of Gchil2203.t1

>Gchil2203.t1 ID=Gchil2203.t1|Name=Gchil2203.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=471bp
MERVRGYMGFAIASKLGATPQFARYGLLRVPNYSRTRPNTTKAVLRPNIA
IVGGGHGGLSVALRLITLPWTRLTKPKITVIDKSPRFCFVPMLYELALGQ
VEQWEIAPKFEDLLQDTSIEFLQGEVDGLDLQKKTIQGICFGKNNNNPFH
LSYDRAVLAMGAEPLNLDSVPGADEFAIPFYNLSHANRLKHKLKDVKQKR
RSGDITNIIVVGGGFSGVELASCLAEELGSSGSVMIVEPSDRVLSKGTTF
NRKTSEKTLSSNGVAVEYLSRVSAITEETVEIRRKQDAEDVDYETLEYPY
DIVLWTAGSRPSTIQQDFGLQIDSKGRLVTDSMLQVEGYHDCLYALGDGC
LAPPNDGYYGTAQVATQQAEYVAWNVWASLTDNPKLRFSYTHLGEMMVLG
SMDASVTTSPGPELDGKVAWAARRLAYLLRMPTDNHRRKVAASWAAHPLL
SKMEGLAKNSGNTSANTRFQ*
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mRNA from alignment at tig00000228_pilon:292849..294261-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2203.t1 ID=Gchil2203.t1|Name=Gchil2203.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1413bp|location=Sequence derived from alignment at tig00000228_pilon:292849..294261- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGAGAGTTCGTGGATATATGGGTTTCGCTATAGCCTCAAAGCTTGG
TGCTACCCCACAATTCGCGCGCTACGGATTGCTGAGGGTGCCCAACTATT
CAAGAACACGGCCCAACACGACAAAGGCTGTCTTGAGGCCGAACATCGCG
ATCGTTGGGGGTGGTCATGGAGGCCTCTCTGTGGCTTTACGGCTGATTAC
GCTACCATGGACTCGACTCACGAAACCTAAAATTACCGTTATAGACAAAT
CACCCCGTTTTTGCTTCGTTCCAATGCTTTACGAACTCGCGTTGGGTCAG
GTTGAGCAATGGGAAATCGCACCAAAGTTTGAAGACCTACTGCAGGATAC
ATCGATTGAATTTTTACAGGGTGAGGTAGATGGACTCGACCTGCAGAAAA
AAACAATACAAGGTATCTGTTTTGGGAAAAACAATAACAACCCGTTCCAT
TTATCCTATGACCGAGCTGTGCTTGCTATGGGCGCCGAACCCCTTAATCT
TGATTCCGTTCCAGGAGCTGATGAGTTCGCCATACCATTTTATAACCTGT
CGCATGCGAACCGTTTGAAGCATAAACTTAAAGATGTAAAACAGAAAAGG
CGAAGCGGAGATATTACGAACATCATTGTCGTTGGAGGAGGCTTTAGTGG
AGTGGAACTTGCATCTTGTTTGGCTGAAGAGCTGGGTTCTTCGGGAAGTG
TAATGATAGTCGAACCCTCAGATCGTGTCCTGTCAAAGGGTACAACATTT
AACAGAAAAACCTCAGAAAAGACACTATCTTCCAACGGCGTGGCTGTCGA
ATACCTTTCCAGAGTAAGTGCTATCACGGAGGAAACTGTCGAAATTCGAA
GGAAGCAAGATGCTGAAGATGTGGATTATGAAACTCTGGAATATCCTTAT
GATATCGTATTATGGACAGCTGGGAGTAGACCGAGCACAATTCAACAGGA
CTTTGGACTGCAAATCGATTCGAAAGGGCGATTAGTAACTGACAGCATGC
TTCAGGTCGAAGGATACCACGATTGTTTGTATGCATTAGGAGATGGATGC
TTAGCCCCGCCTAATGATGGGTATTATGGCACAGCACAGGTTGCTACTCA
ACAAGCAGAGTATGTTGCGTGGAACGTTTGGGCGTCCCTTACCGATAATC
CAAAACTTCGGTTCAGCTACACTCATCTTGGAGAAATGATGGTTTTGGGC
TCGATGGATGCATCGGTTACTACATCCCCAGGACCAGAGCTCGATGGGAA
AGTTGCGTGGGCTGCAAGGCGTTTAGCTTACCTTCTTAGGATGCCCACTG
ATAATCATCGTAGAAAAGTAGCTGCAAGTTGGGCGGCACATCCCTTACTG
TCGAAGATGGAGGGTTTAGCAAAGAATTCTGGAAATACTTCTGCAAATAC
ACGGTTTCAATAG
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Coding sequence (CDS) from alignment at tig00000228_pilon:292849..294261-

>Gchil2203.t1 ID=Gchil2203.t1|Name=Gchil2203.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1413bp|location=Sequence derived from alignment at tig00000228_pilon:292849..294261- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGAGAGTTCGTGGATATATGGGTTTCGCTATAGCCTCAAAGCTTGG
TGCTACCCCACAATTCGCGCGCTACGGATTGCTGAGGGTGCCCAACTATT
CAAGAACACGGCCCAACACGACAAAGGCTGTCTTGAGGCCGAACATCGCG
ATCGTTGGGGGTGGTCATGGAGGCCTCTCTGTGGCTTTACGGCTGATTAC
GCTACCATGGACTCGACTCACGAAACCTAAAATTACCGTTATAGACAAAT
CACCCCGTTTTTGCTTCGTTCCAATGCTTTACGAACTCGCGTTGGGTCAG
GTTGAGCAATGGGAAATCGCACCAAAGTTTGAAGACCTACTGCAGGATAC
ATCGATTGAATTTTTACAGGGTGAGGTAGATGGACTCGACCTGCAGAAAA
AAACAATACAAGGTATCTGTTTTGGGAAAAACAATAACAACCCGTTCCAT
TTATCCTATGACCGAGCTGTGCTTGCTATGGGCGCCGAACCCCTTAATCT
TGATTCCGTTCCAGGAGCTGATGAGTTCGCCATACCATTTTATAACCTGT
CGCATGCGAACCGTTTGAAGCATAAACTTAAAGATGTAAAACAGAAAAGG
CGAAGCGGAGATATTACGAACATCATTGTCGTTGGAGGAGGCTTTAGTGG
AGTGGAACTTGCATCTTGTTTGGCTGAAGAGCTGGGTTCTTCGGGAAGTG
TAATGATAGTCGAACCCTCAGATCGTGTCCTGTCAAAGGGTACAACATTT
AACAGAAAAACCTCAGAAAAGACACTATCTTCCAACGGCGTGGCTGTCGA
ATACCTTTCCAGAGTAAGTGCTATCACGGAGGAAACTGTCGAAATTCGAA
GGAAGCAAGATGCTGAAGATGTGGATTATGAAACTCTGGAATATCCTTAT
GATATCGTATTATGGACAGCTGGGAGTAGACCGAGCACAATTCAACAGGA
CTTTGGACTGCAAATCGATTCGAAAGGGCGATTAGTAACTGACAGCATGC
TTCAGGTCGAAGGATACCACGATTGTTTGTATGCATTAGGAGATGGATGC
TTAGCCCCGCCTAATGATGGGTATTATGGCACAGCACAGGTTGCTACTCA
ACAAGCAGAGTATGTTGCGTGGAACGTTTGGGCGTCCCTTACCGATAATC
CAAAACTTCGGTTCAGCTACACTCATCTTGGAGAAATGATGGTTTTGGGC
TCGATGGATGCATCGGTTACTACATCCCCAGGACCAGAGCTCGATGGGAA
AGTTGCGTGGGCTGCAAGGCGTTTAGCTTACCTTCTTAGGATGCCCACTG
ATAATCATCGTAGAAAAGTAGCTGCAAGTTGGGCGGCACATCCCTTACTG
TCGAAGATGGAGGGTTTAGCAAAGAATTCTGGAAATACTTCTGCAAATAC
ACGGTTTCAATAG
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