Gchil2201.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2201.t1
Unique Name	Gchil2201.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	588

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000228_pilon	contig	tig00000228_pilon:283846..285609 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	1449068.JMLQ01000004_gene1052
PFAMs	Methyltransf_25
Max annot lvl	201174\|Actinobacteria
Evalue	1.36e-14
EggNOG OGs	2DD0M@1\|root,2ZG21@2\|Bacteria,2IJFT@201174\|Actinobacteria,4G5DB@85025\|Nocardiaceae
Description	Methyltransferase domain
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2201	Gchil2201	Gracilaria chilensis NLEC103_M9 male	gene	tig00000228_pilon 283846..285609 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2201.t1.start1	Gchil2201.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000228_pilon 283846..283848 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2201.t1.CDS1	Gchil2201.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000228_pilon 283846..285609 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2201.t1.exon1	Gchil2201.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000228_pilon 283846..285609 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2201.t1.stop1	Gchil2201.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000228_pilon 285607..285609 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2201.t1	Gchil2201.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000228_pilon 283846..285609 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000228_pilon:283846..285609+
coding sequence from alignment at tig00000228_pilon:283846..285609+

mRNA sequence

>Gchil2201.t1 ID=Gchil2201.t1|Name=Gchil2201.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=588bp
MAPPLSEDDYVQFYNLRREASSMTSTSISWLSSETVNLLENAVPTPDGIF
KVLSIGPGPGDIDLQFIHTLRHHISSPRLSSIWKGLHYVALEPNPTYSKG
LCDSLEQVKFHFSDFTFQVHTVCFEQFHDLNHKYDTILLAHVLYYFEHLA
LALQRTRFLARANASVIIFHLSRTAISDIIRNVLKGSHDKEMEVLNATGV
EHTLQLMSAPYRYQELSAELDVSECLKLSKVGAKIMSFCVERDLSSLTPA
QLSRVAGVFREKAFEKEKKRFVLQDNVGVFVVKPMEKNLKLDCDTDAVDD
YRVLSREVPWQQLFRTVLPDSKVSLRVLDVACGRGRWLSALSMYSAENFK
GQTVELDVLDVSQTAVEQMVQTIKPPFTLHSSFVSKVQDVDLDRSSYDII
WSMHGLYAVAADELPTVLSSMNLALRQNGVCVIALATRKSFYVAMPNEYS
KAVKEIDADSEEHRITSAEDVIEALRNLDIAFKVRSMVYEQRIDAVNEAE
CISYVVDESMFNSFNADESETLEHFAQTDSLPQRQSAESIMQAPAVQQYI
GHFLRGGAYHFGQEIQMISFGHPSVLESLPAQAGVYV*

spliced messenger RNA

>Gchil2201.t1 ID=Gchil2201.t1|Name=Gchil2201.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1764bp|location=Sequence derived from alignment at tig00000228_pilon:283846..285609+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCTCCGCCGCTTTCCGAGGATGACTATGTTCAATTTTACAATCTTCG
ACGCGAGGCTTCGTCCATGACATCAACTTCCATCTCATGGCTAAGTAGTG
AGACGGTTAACTTACTTGAAAACGCCGTACCCACTCCAGACGGCATCTTT
AAAGTACTCAGTATCGGGCCTGGTCCCGGCGACATTGATCTCCAATTCAT
ACACACTCTCCGACACCATATCAGCTCACCCCGCTTGAGTAGTATTTGGA
AAGGCTTGCATTATGTAGCACTGGAACCCAACCCAACTTATAGCAAGGGA
TTATGTGATAGTCTCGAGCAGGTTAAATTTCATTTCTCGGATTTCACTTT
TCAAGTTCACACCGTTTGTTTCGAACAATTTCATGACTTGAACCACAAGT
ACGATACCATTCTGTTGGCTCACGTTCTCTATTACTTTGAACACCTCGCG
CTTGCCTTGCAACGCACACGCTTTCTGGCAAGAGCAAATGCATCGGTGAT
TATCTTTCATTTGAGTCGCACTGCCATTTCTGACATCATACGGAACGTTT
TGAAAGGTTCACATGACAAAGAAATGGAGGTGCTTAATGCCACTGGCGTC
GAACATACTTTGCAACTTATGAGTGCACCATATCGCTACCAGGAATTAAG
CGCCGAATTGGATGTGTCTGAGTGTCTGAAACTTTCTAAAGTAGGTGCGA
AGATCATGTCGTTTTGCGTGGAGCGTGATTTGAGCAGCTTGACTCCAGCA
CAGCTCTCTCGTGTCGCGGGTGTTTTTCGCGAAAAGGCCTTCGAAAAGGA
AAAGAAGCGCTTTGTGCTCCAAGATAACGTAGGTGTGTTTGTGGTAAAAC
CTATGGAAAAGAATCTTAAACTTGACTGCGATACGGATGCAGTGGATGAC
TATCGGGTCCTCAGTCGTGAAGTACCATGGCAGCAGCTCTTTCGGACTGT
TCTACCTGACAGTAAGGTGTCCTTGCGTGTCTTAGATGTTGCATGCGGTC
GTGGGCGGTGGTTGAGTGCATTATCTATGTACAGTGCCGAAAATTTTAAG
GGTCAAACCGTAGAACTTGATGTATTGGATGTGTCCCAAACTGCGGTTGA
ACAAATGGTGCAGACCATAAAACCGCCCTTCACACTCCACTCTAGCTTCG
TGTCTAAGGTACAAGATGTGGATCTCGACCGAAGTTCCTATGACATCATT
TGGTCTATGCATGGCTTGTATGCTGTAGCTGCTGATGAGCTTCCTACCGT
ATTAAGCAGCATGAACTTGGCTCTCCGGCAGAATGGAGTTTGCGTGATTG
CCTTGGCAACGCGCAAATCGTTTTACGTGGCAATGCCTAATGAGTACTCC
AAGGCAGTGAAGGAAATCGACGCCGACAGCGAAGAACACCGTATAACAAG
CGCAGAAGATGTGATCGAGGCTCTTCGCAATCTCGATATTGCATTTAAAG
TTCGCTCAATGGTATATGAACAACGAATCGATGCTGTTAATGAAGCGGAA
TGTATTTCCTACGTGGTAGACGAATCCATGTTTAATTCATTCAACGCCGA
CGAAAGTGAAACCCTTGAGCACTTTGCGCAGACTGATTCCCTGCCGCAAA
GACAATCAGCGGAAAGTATTATGCAAGCGCCAGCCGTACAGCAGTACATC
GGCCATTTCTTGAGAGGCGGCGCGTACCATTTTGGGCAAGAGATTCAAAT
GATTTCCTTTGGCCATCCGTCTGTTTTAGAATCGTTGCCGGCGCAGGCTG
GAGTATACGTATGA

protein sequence of Gchil2201.t1

>Gchil2201.t1 ID=Gchil2201.t1|Name=Gchil2201.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=588bp
MAPPLSEDDYVQFYNLRREASSMTSTSISWLSSETVNLLENAVPTPDGIF
KVLSIGPGPGDIDLQFIHTLRHHISSPRLSSIWKGLHYVALEPNPTYSKG
LCDSLEQVKFHFSDFTFQVHTVCFEQFHDLNHKYDTILLAHVLYYFEHLA
LALQRTRFLARANASVIIFHLSRTAISDIIRNVLKGSHDKEMEVLNATGV
EHTLQLMSAPYRYQELSAELDVSECLKLSKVGAKIMSFCVERDLSSLTPA
QLSRVAGVFREKAFEKEKKRFVLQDNVGVFVVKPMEKNLKLDCDTDAVDD
YRVLSREVPWQQLFRTVLPDSKVSLRVLDVACGRGRWLSALSMYSAENFK
GQTVELDVLDVSQTAVEQMVQTIKPPFTLHSSFVSKVQDVDLDRSSYDII
WSMHGLYAVAADELPTVLSSMNLALRQNGVCVIALATRKSFYVAMPNEYS
KAVKEIDADSEEHRITSAEDVIEALRNLDIAFKVRSMVYEQRIDAVNEAE
CISYVVDESMFNSFNADESETLEHFAQTDSLPQRQSAESIMQAPAVQQYI
GHFLRGGAYHFGQEIQMISFGHPSVLESLPAQAGVYV*

mRNA from alignment at tig00000228_pilon:283846..285609+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2201.t1 ID=Gchil2201.t1|Name=Gchil2201.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1764bp|location=Sequence derived from alignment at tig00000228_pilon:283846..285609+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCGCCGCTTTCCGAGGATGACTATGTTCAATTTTACAATCTTCG
ACGCGAGGCTTCGTCCATGACATCAACTTCCATCTCATGGCTAAGTAGTG
AGACGGTTAACTTACTTGAAAACGCCGTACCCACTCCAGACGGCATCTTT
AAAGTACTCAGTATCGGGCCTGGTCCCGGCGACATTGATCTCCAATTCAT
ACACACTCTCCGACACCATATCAGCTCACCCCGCTTGAGTAGTATTTGGA
AAGGCTTGCATTATGTAGCACTGGAACCCAACCCAACTTATAGCAAGGGA
TTATGTGATAGTCTCGAGCAGGTTAAATTTCATTTCTCGGATTTCACTTT
TCAAGTTCACACCGTTTGTTTCGAACAATTTCATGACTTGAACCACAAGT
ACGATACCATTCTGTTGGCTCACGTTCTCTATTACTTTGAACACCTCGCG
CTTGCCTTGCAACGCACACGCTTTCTGGCAAGAGCAAATGCATCGGTGAT
TATCTTTCATTTGAGTCGCACTGCCATTTCTGACATCATACGGAACGTTT
TGAAAGGTTCACATGACAAAGAAATGGAGGTGCTTAATGCCACTGGCGTC
GAACATACTTTGCAACTTATGAGTGCACCATATCGCTACCAGGAATTAAG
CGCCGAATTGGATGTGTCTGAGTGTCTGAAACTTTCTAAAGTAGGTGCGA
AGATCATGTCGTTTTGCGTGGAGCGTGATTTGAGCAGCTTGACTCCAGCA
CAGCTCTCTCGTGTCGCGGGTGTTTTTCGCGAAAAGGCCTTCGAAAAGGA
AAAGAAGCGCTTTGTGCTCCAAGATAACGTAGGTGTGTTTGTGGTAAAAC
CTATGGAAAAGAATCTTAAACTTGACTGCGATACGGATGCAGTGGATGAC
TATCGGGTCCTCAGTCGTGAAGTACCATGGCAGCAGCTCTTTCGGACTGT
TCTACCTGACAGTAAGGTGTCCTTGCGTGTCTTAGATGTTGCATGCGGTC
GTGGGCGGTGGTTGAGTGCATTATCTATGTACAGTGCCGAAAATTTTAAG
GGTCAAACCGTAGAACTTGATGTATTGGATGTGTCCCAAACTGCGGTTGA
ACAAATGGTGCAGACCATAAAACCGCCCTTCACACTCCACTCTAGCTTCG
TGTCTAAGGTACAAGATGTGGATCTCGACCGAAGTTCCTATGACATCATT
TGGTCTATGCATGGCTTGTATGCTGTAGCTGCTGATGAGCTTCCTACCGT
ATTAAGCAGCATGAACTTGGCTCTCCGGCAGAATGGAGTTTGCGTGATTG
CCTTGGCAACGCGCAAATCGTTTTACGTGGCAATGCCTAATGAGTACTCC
AAGGCAGTGAAGGAAATCGACGCCGACAGCGAAGAACACCGTATAACAAG
CGCAGAAGATGTGATCGAGGCTCTTCGCAATCTCGATATTGCATTTAAAG
TTCGCTCAATGGTATATGAACAACGAATCGATGCTGTTAATGAAGCGGAA
TGTATTTCCTACGTGGTAGACGAATCCATGTTTAATTCATTCAACGCCGA
CGAAAGTGAAACCCTTGAGCACTTTGCGCAGACTGATTCCCTGCCGCAAA
GACAATCAGCGGAAAGTATTATGCAAGCGCCAGCCGTACAGCAGTACATC
GGCCATTTCTTGAGAGGCGGCGCGTACCATTTTGGGCAAGAGATTCAAAT
GATTTCCTTTGGCCATCCGTCTGTTTTAGAATCGTTGCCGGCGCAGGCTG
GAGTATACGTATGA

Coding sequence (CDS) from alignment at tig00000228_pilon:283846..285609+

>Gchil2201.t1 ID=Gchil2201.t1|Name=Gchil2201.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1764bp|location=Sequence derived from alignment at tig00000228_pilon:283846..285609+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCTCCGCCGCTTTCCGAGGATGACTATGTTCAATTTTACAATCTTCG
ACGCGAGGCTTCGTCCATGACATCAACTTCCATCTCATGGCTAAGTAGTG
AGACGGTTAACTTACTTGAAAACGCCGTACCCACTCCAGACGGCATCTTT
AAAGTACTCAGTATCGGGCCTGGTCCCGGCGACATTGATCTCCAATTCAT
ACACACTCTCCGACACCATATCAGCTCACCCCGCTTGAGTAGTATTTGGA
AAGGCTTGCATTATGTAGCACTGGAACCCAACCCAACTTATAGCAAGGGA
TTATGTGATAGTCTCGAGCAGGTTAAATTTCATTTCTCGGATTTCACTTT
TCAAGTTCACACCGTTTGTTTCGAACAATTTCATGACTTGAACCACAAGT
ACGATACCATTCTGTTGGCTCACGTTCTCTATTACTTTGAACACCTCGCG
CTTGCCTTGCAACGCACACGCTTTCTGGCAAGAGCAAATGCATCGGTGAT
TATCTTTCATTTGAGTCGCACTGCCATTTCTGACATCATACGGAACGTTT
TGAAAGGTTCACATGACAAAGAAATGGAGGTGCTTAATGCCACTGGCGTC
GAACATACTTTGCAACTTATGAGTGCACCATATCGCTACCAGGAATTAAG
CGCCGAATTGGATGTGTCTGAGTGTCTGAAACTTTCTAAAGTAGGTGCGA
AGATCATGTCGTTTTGCGTGGAGCGTGATTTGAGCAGCTTGACTCCAGCA
CAGCTCTCTCGTGTCGCGGGTGTTTTTCGCGAAAAGGCCTTCGAAAAGGA
AAAGAAGCGCTTTGTGCTCCAAGATAACGTAGGTGTGTTTGTGGTAAAAC
CTATGGAAAAGAATCTTAAACTTGACTGCGATACGGATGCAGTGGATGAC
TATCGGGTCCTCAGTCGTGAAGTACCATGGCAGCAGCTCTTTCGGACTGT
TCTACCTGACAGTAAGGTGTCCTTGCGTGTCTTAGATGTTGCATGCGGTC
GTGGGCGGTGGTTGAGTGCATTATCTATGTACAGTGCCGAAAATTTTAAG
GGTCAAACCGTAGAACTTGATGTATTGGATGTGTCCCAAACTGCGGTTGA
ACAAATGGTGCAGACCATAAAACCGCCCTTCACACTCCACTCTAGCTTCG
TGTCTAAGGTACAAGATGTGGATCTCGACCGAAGTTCCTATGACATCATT
TGGTCTATGCATGGCTTGTATGCTGTAGCTGCTGATGAGCTTCCTACCGT
ATTAAGCAGCATGAACTTGGCTCTCCGGCAGAATGGAGTTTGCGTGATTG
CCTTGGCAACGCGCAAATCGTTTTACGTGGCAATGCCTAATGAGTACTCC
AAGGCAGTGAAGGAAATCGACGCCGACAGCGAAGAACACCGTATAACAAG
CGCAGAAGATGTGATCGAGGCTCTTCGCAATCTCGATATTGCATTTAAAG
TTCGCTCAATGGTATATGAACAACGAATCGATGCTGTTAATGAAGCGGAA
TGTATTTCCTACGTGGTAGACGAATCCATGTTTAATTCATTCAACGCCGA
CGAAAGTGAAACCCTTGAGCACTTTGCGCAGACTGATTCCCTGCCGCAAA
GACAATCAGCGGAAAGTATTATGCAAGCGCCAGCCGTACAGCAGTACATC
GGCCATTTCTTGAGAGGCGGCGCGTACCATTTTGGGCAAGAGATTCAAAT
GATTTCCTTTGGCCATCCGTCTGTTTTAGAATCGTTGCCGGCGCAGGCTG
GAGTATACGTATGA