Gchil2199.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2199.t1
Unique Name	Gchil2199.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	351

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000228_pilon	contig	tig00000228_pilon:279701..280753 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	9031.ENSGALP00000043246
Preferred name	LYPLA1
PFAMs	Abhydrolase_2
Max annot lvl	33208\|Metazoa
KEGG rclass	RC00020,RC00037,RC00041,RC00094
KEGG ko	ko:K06128,ko:K06130
KEGG Reaction	R02746,R02747,R03416,R03417
KEGG Pathway	ko00564,ko05231,map00564,map05231
GOs	GO:0002084,GO:0003674,GO:0003824,GO:0004620,GO:0004622,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005829,GO:0006464,GO:0006807,GO:0008150,GO:0008152,GO:0008474,GO:0009056,GO:0009057,GO:0009987,GO:0016298,GO:0016787,GO:0016788,GO:0016790,GO:0019222,GO:0019538,GO:0030163,GO:0032768,GO:0032879,GO:0032880,GO:0035601,GO:0036211,GO:0042157,GO:0042159,GO:0042996,GO:0042997,GO:0043170,GO:0043412,GO:0044237,GO:0044238,GO:0044260,GO:0044267,GO:0044424,GO:0044444,GO:0044464,GO:0048519,GO:0048523,GO:0050789,GO:0050790,GO:0050794,GO:0050999,GO:0051049,GO:0051051,GO:0051223,GO:0051224,GO:0051341,GO:0052689,GO:0060341,GO:0060627,GO:0065007,GO:0065009,GO:0070201,GO:0071704,GO:0090087,GO:0098599,GO:0098732,GO:0098734,GO:0140096,GO:1901564,GO:1901565,GO:1901575,GO:1903076,GO:1903077,GO:1903827,GO:1903828,GO:1904375,GO:1904376,GO:1904950,GO:1905475,GO:1905476
Evalue	9.15e-13
EggNOG OGs	COG0400@1\|root,KOG2112@2759\|Eukaryota,38RN5@33154\|Opisthokonta,3BCBX@33208\|Metazoa,3CRQS@33213\|Bilateria,48294@7711\|Chordata,49224@7742\|Vertebrata,4GHZP@8782\|Aves
EC	3.1.1.5
Description	Acyl-protein thioesterase 1
COG category	I
BRITE	ko00000,ko00001,ko01000

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2199	Gchil2199	Gracilaria chilensis NLEC103_M9 male	gene	tig00000228_pilon 279701..280753 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2199.t1.start1	Gchil2199.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000228_pilon 279701..279703 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2199.t1.CDS1	Gchil2199.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000228_pilon 279701..280753 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2199.t1.exon1	Gchil2199.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000228_pilon 279701..280753 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2199.t1.stop1	Gchil2199.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000228_pilon 280751..280753 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2199.t1	Gchil2199.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000228_pilon 279701..280753 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000228_pilon:279701..280753+
coding sequence from alignment at tig00000228_pilon:279701..280753+

mRNA sequence

>Gchil2199.t1 ID=Gchil2199.t1|Name=Gchil2199.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=351bp
MEFGLWFILELVLFHISRASLSLDRFQMACSGTYLPCETLRRERSTWKAS
YFDHSILPDNQQRLTENETLVFAQTWGATCGAKLPNTNHTLLCSEDALTL
VPPKKPRNAIVFMHGLQRRQDIAIYLPFFSRLLSDDSELTSSLQIDHPLA
PFRKLTAGQIVSPPIRKARAWFDVVGLPANIPIPIPAEPSTLDDRLGLYR
TAEFIDAVVHSQCCKLSIPCNRVVLMGQSLGAVATLEAVLATDIPLAGAV
AMSGFLPRASDYLIPGIQAFSARERKYTVTMIHGRDDEVIPFALGNATAE
IVKSAVESTGGAFRFVGVKDADHFRTFFQSPELYTSVRNALREAFYCQPA
*

spliced messenger RNA

>Gchil2199.t1 ID=Gchil2199.t1|Name=Gchil2199.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000228_pilon:279701..280753+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAATTTGGACTCTGGTTTATCCTCGAATTGGTCTTGTTCCACATCAG
CCGCGCTTCACTAAGTTTGGATCGGTTTCAAATGGCTTGTTCCGGAACGT
ATCTGCCCTGTGAGACTCTTCGTCGTGAGAGATCGACATGGAAAGCCTCC
TATTTTGACCACTCGATATTACCGGACAACCAACAACGCCTAACAGAGAA
TGAAACGTTAGTTTTCGCACAAACCTGGGGCGCAACTTGTGGCGCCAAAC
TTCCCAACACCAACCATACTTTGCTATGCTCCGAGGATGCGCTCACTCTT
GTACCACCGAAGAAACCACGCAATGCCATTGTTTTCATGCACGGTTTGCA
GCGCCGACAAGACATAGCGATTTATCTTCCGTTCTTCTCGAGGCTTCTGT
CTGACGACTCGGAGTTGACATCTTCTTTGCAAATCGACCATCCGTTAGCA
CCCTTTCGTAAACTTACGGCTGGCCAGATTGTATCCCCTCCCATCAGGAA
AGCAAGAGCCTGGTTTGACGTAGTTGGTCTCCCAGCTAATATCCCAATAC
CAATACCTGCCGAACCGAGTACTCTCGACGATCGCCTCGGCTTGTATCGA
ACTGCGGAGTTCATTGATGCCGTTGTTCATTCACAGTGTTGCAAGCTCTC
GATCCCTTGCAATCGAGTTGTTCTCATGGGCCAATCTTTAGGAGCGGTTG
CGACACTAGAAGCGGTGCTTGCAACCGATATTCCTCTAGCCGGAGCAGTT
GCAATGTCAGGTTTCCTGCCACGGGCCAGTGACTACTTGATACCAGGTAT
TCAAGCTTTTTCCGCTAGAGAGCGAAAGTACACTGTTACTATGATTCATG
GAAGGGATGATGAAGTTATACCGTTCGCACTCGGAAACGCAACAGCCGAA
ATTGTTAAGAGCGCGGTGGAATCCACCGGCGGGGCTTTCCGCTTTGTGGG
GGTCAAAGATGCTGACCACTTTCGTACGTTTTTTCAATCTCCCGAACTAT
ACACATCCGTTCGAAATGCACTGCGGGAGGCCTTTTATTGTCAACCTGCG
TGA

protein sequence of Gchil2199.t1

>Gchil2199.t1 ID=Gchil2199.t1|Name=Gchil2199.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=351bp
MEFGLWFILELVLFHISRASLSLDRFQMACSGTYLPCETLRRERSTWKAS
YFDHSILPDNQQRLTENETLVFAQTWGATCGAKLPNTNHTLLCSEDALTL
VPPKKPRNAIVFMHGLQRRQDIAIYLPFFSRLLSDDSELTSSLQIDHPLA
PFRKLTAGQIVSPPIRKARAWFDVVGLPANIPIPIPAEPSTLDDRLGLYR
TAEFIDAVVHSQCCKLSIPCNRVVLMGQSLGAVATLEAVLATDIPLAGAV
AMSGFLPRASDYLIPGIQAFSARERKYTVTMIHGRDDEVIPFALGNATAE
IVKSAVESTGGAFRFVGVKDADHFRTFFQSPELYTSVRNALREAFYCQPA
*

mRNA from alignment at tig00000228_pilon:279701..280753+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2199.t1 ID=Gchil2199.t1|Name=Gchil2199.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1053bp|location=Sequence derived from alignment at tig00000228_pilon:279701..280753+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAATTTGGACTCTGGTTTATCCTCGAATTGGTCTTGTTCCACATCAG
CCGCGCTTCACTAAGTTTGGATCGGTTTCAAATGGCTTGTTCCGGAACGT
ATCTGCCCTGTGAGACTCTTCGTCGTGAGAGATCGACATGGAAAGCCTCC
TATTTTGACCACTCGATATTACCGGACAACCAACAACGCCTAACAGAGAA
TGAAACGTTAGTTTTCGCACAAACCTGGGGCGCAACTTGTGGCGCCAAAC
TTCCCAACACCAACCATACTTTGCTATGCTCCGAGGATGCGCTCACTCTT
GTACCACCGAAGAAACCACGCAATGCCATTGTTTTCATGCACGGTTTGCA
GCGCCGACAAGACATAGCGATTTATCTTCCGTTCTTCTCGAGGCTTCTGT
CTGACGACTCGGAGTTGACATCTTCTTTGCAAATCGACCATCCGTTAGCA
CCCTTTCGTAAACTTACGGCTGGCCAGATTGTATCCCCTCCCATCAGGAA
AGCAAGAGCCTGGTTTGACGTAGTTGGTCTCCCAGCTAATATCCCAATAC
CAATACCTGCCGAACCGAGTACTCTCGACGATCGCCTCGGCTTGTATCGA
ACTGCGGAGTTCATTGATGCCGTTGTTCATTCACAGTGTTGCAAGCTCTC
GATCCCTTGCAATCGAGTTGTTCTCATGGGCCAATCTTTAGGAGCGGTTG
CGACACTAGAAGCGGTGCTTGCAACCGATATTCCTCTAGCCGGAGCAGTT
GCAATGTCAGGTTTCCTGCCACGGGCCAGTGACTACTTGATACCAGGTAT
TCAAGCTTTTTCCGCTAGAGAGCGAAAGTACACTGTTACTATGATTCATG
GAAGGGATGATGAAGTTATACCGTTCGCACTCGGAAACGCAACAGCCGAA
ATTGTTAAGAGCGCGGTGGAATCCACCGGCGGGGCTTTCCGCTTTGTGGG
GGTCAAAGATGCTGACCACTTTCGTACGTTTTTTCAATCTCCCGAACTAT
ACACATCCGTTCGAAATGCACTGCGGGAGGCCTTTTATTGTCAACCTGCG
TGA

Coding sequence (CDS) from alignment at tig00000228_pilon:279701..280753+

>Gchil2199.t1 ID=Gchil2199.t1|Name=Gchil2199.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1053bp|location=Sequence derived from alignment at tig00000228_pilon:279701..280753+ (Gracilaria chilensis NLEC103_M9 male)
ATGGAATTTGGACTCTGGTTTATCCTCGAATTGGTCTTGTTCCACATCAG
CCGCGCTTCACTAAGTTTGGATCGGTTTCAAATGGCTTGTTCCGGAACGT
ATCTGCCCTGTGAGACTCTTCGTCGTGAGAGATCGACATGGAAAGCCTCC
TATTTTGACCACTCGATATTACCGGACAACCAACAACGCCTAACAGAGAA
TGAAACGTTAGTTTTCGCACAAACCTGGGGCGCAACTTGTGGCGCCAAAC
TTCCCAACACCAACCATACTTTGCTATGCTCCGAGGATGCGCTCACTCTT
GTACCACCGAAGAAACCACGCAATGCCATTGTTTTCATGCACGGTTTGCA
GCGCCGACAAGACATAGCGATTTATCTTCCGTTCTTCTCGAGGCTTCTGT
CTGACGACTCGGAGTTGACATCTTCTTTGCAAATCGACCATCCGTTAGCA
CCCTTTCGTAAACTTACGGCTGGCCAGATTGTATCCCCTCCCATCAGGAA
AGCAAGAGCCTGGTTTGACGTAGTTGGTCTCCCAGCTAATATCCCAATAC
CAATACCTGCCGAACCGAGTACTCTCGACGATCGCCTCGGCTTGTATCGA
ACTGCGGAGTTCATTGATGCCGTTGTTCATTCACAGTGTTGCAAGCTCTC
GATCCCTTGCAATCGAGTTGTTCTCATGGGCCAATCTTTAGGAGCGGTTG
CGACACTAGAAGCGGTGCTTGCAACCGATATTCCTCTAGCCGGAGCAGTT
GCAATGTCAGGTTTCCTGCCACGGGCCAGTGACTACTTGATACCAGGTAT
TCAAGCTTTTTCCGCTAGAGAGCGAAAGTACACTGTTACTATGATTCATG
GAAGGGATGATGAAGTTATACCGTTCGCACTCGGAAACGCAACAGCCGAA
ATTGTTAAGAGCGCGGTGGAATCCACCGGCGGGGCTTTCCGCTTTGTGGG
GGTCAAAGATGCTGACCACTTTCGTACGTTTTTTCAATCTCCCGAACTAT
ACACATCCGTTCGAAATGCACTGCGGGAGGCCTTTTATTGTCAACCTGCG
TGA