Gchil2197.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2197.t1
Unique NameGchil2197.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length379
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:238223..240197 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog10224.XP_002731519.2
Preferred nameSUGT1
PFAMsCS,SGS,TPR_1,TPR_2
Max annot lvl33208|Metazoa
KEGG koko:K12795
KEGG Pathwayko04621,ko04626,map04621,map04626
GOsGO:0000151,GO:0000226,GO:0000278,GO:0000775,GO:0000776,GO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005694,GO:0005737,GO:0005813,GO:0005815,GO:0005829,GO:0005856,GO:0005886,GO:0006996,GO:0007010,GO:0007017,GO:0007049,GO:0007098,GO:0007163,GO:0007275,GO:0007399,GO:0007405,GO:0008150,GO:0008283,GO:0008356,GO:0009987,GO:0015630,GO:0016020,GO:0016043,GO:0017145,GO:0022008,GO:0022402,GO:0030011,GO:0030154,GO:0030674,GO:0031023,GO:0031647,GO:0032153,GO:0032154,GO:0032155,GO:0032501,GO:0032502,GO:0032991,GO:0035821,GO:0036445,GO:0043226,GO:0043228,GO:0043229,GO:0043232,GO:0043946,GO:0043947,GO:0044092,GO:0044359,GO:0044362,GO:0044403,GO:0044419,GO:0044422,GO:0044424,GO:0044425,GO:0044427,GO:0044430,GO:0044444,GO:0044446,GO:0044459,GO:0044464,GO:0045165,GO:0045196,GO:0045201,GO:0048103,GO:0048699,GO:0048731,GO:0048856,GO:0048869,GO:0050790,GO:0050821,GO:0051087,GO:0051301,GO:0051702,GO:0051704,GO:0051817,GO:0051851,GO:0052203,GO:0052204,GO:0052205,GO:0052405,GO:0052422,GO:0052428,GO:0055057,GO:0055059,GO:0060090,GO:0061351,GO:0065007,GO:0065008,GO:0065009,GO:0071840,GO:0071944,GO:0072089,GO:0098590,GO:0098687,GO:0098722,GO:1902494,GO:1990234
Evalue1.05e-25
EggNOG OGsCOG0639@1|root,COG5091@1|root,KOG0376@2759|Eukaryota,KOG1309@2759|Eukaryota,38TPS@33154|Opisthokonta,3BJXA@33208|Metazoa,3CZTP@33213|Bilateria
Descriptionsuppressor of G2 allele of SKP1
COG categoryT
BRITEko00000,ko00001
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2197Gchil2197Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 238223..240197 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2197.t1Gchil2197.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 238223..240197 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2197.t1.start1Gchil2197.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 238223..238225 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2197.t1.CDS1Gchil2197.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 238223..238260 +
Gchil2197.t1.CDS2Gchil2197.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 238344..238538 +
Gchil2197.t1.CDS3Gchil2197.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 239294..240197 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2197.t1.exon1Gchil2197.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 238223..238260 +
Gchil2197.t1.exon2Gchil2197.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 238344..238538 +
Gchil2197.t1.exon3Gchil2197.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 239294..240197 +


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2197.t1.intron1Gchil2197.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 238261..238343 +
Gchil2197.t1.intron2Gchil2197.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 238539..239293 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2197.t1.stop1Gchil2197.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 240195..240197 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2197.t1 ID=Gchil2197.t1|Name=Gchil2197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=379bp
MLALRGRDRTTWKNFSLVLEIDCPNCSNVASLEAADCIESAIFSDSCSQY
FRCKTVVEEVYLVCFRQKSEVESRIHIGSLMSVEEYDQARKVAEQAIKIA
PSHSQSWYWKGAALLKLSRREDAKFSFQKAAMFESDLVKKTNYIDWVNRC
EEEPMEVIDGTAKTVDSKDCSSPKPSPETTPRDAFQGEISKPITTRREWY
QSATYVNIDIYAKNVEKDRSTVVFEENRIHVTLARPNMDDYFFRAELFAP
IVTSESSWSASRFKVELKLRKYRQGEVWKALDREAQVLSAQAQAGQESIR
RRDQQEARQRGLTSFAESELQNYKEDDSAMSLFRTIYKDADDDMRRAMMK
SYSESGGKVLSTNWDEVRKEKVTYKDEE*
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spliced messenger RNA

>Gchil2197.t1 ID=Gchil2197.t1|Name=Gchil2197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1137bp|location=Sequence derived from alignment at tig00000228_pilon:238223..240197+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCTTGCCTTGCGCGGTAGGGATCGAACCACCTGGAAAAACTTTTCTCT
GGTGCTCGAGATTGATTGTCCAAACTGTTCTAACGTAGCTTCTTTGGAAG
CCGCTGACTGCATTGAATCAGCCATTTTCTCTGATTCTTGTTCTCAGTAC
TTCAGGTGTAAAACAGTTGTCGAGGAAGTGTACCTTGTATGTTTCAGACA
GAAGAGTGAAGTAGAGAGCCGCATTCACATCGGCTCGCTGATGTCTGTAG
AAGAATATGATCAAGCAAGGAAAGTTGCTGAACAGGCAATCAAGATTGCT
CCGAGCCATAGTCAGTCTTGGTACTGGAAAGGAGCGGCACTTCTCAAGCT
GAGCCGCCGCGAAGACGCGAAGTTTTCCTTTCAGAAAGCGGCAATGTTCG
AGAGTGATCTTGTGAAGAAAACCAATTATATTGACTGGGTGAATCGATGT
GAAGAGGAACCGATGGAAGTCATTGATGGGACTGCAAAGACCGTGGATTC
AAAGGATTGCTCGAGTCCTAAACCCTCTCCTGAGACGACACCACGTGACG
CTTTTCAAGGCGAGATATCGAAACCAATCACAACTCGAAGGGAATGGTAT
CAGTCCGCAACGTATGTAAACATTGATATATATGCTAAGAATGTGGAAAA
AGACCGCAGCACGGTAGTTTTCGAAGAAAACCGAATCCATGTCACATTAG
CCCGGCCCAATATGGACGATTACTTTTTTAGGGCGGAGTTGTTCGCGCCG
ATTGTAACTTCGGAGAGCTCTTGGAGTGCAAGCCGATTCAAGGTAGAGTT
AAAGCTGAGAAAATATCGGCAGGGAGAAGTTTGGAAGGCTCTGGATAGAG
AAGCTCAAGTTCTTTCAGCTCAAGCCCAAGCTGGACAGGAGTCTATTAGA
CGCCGGGATCAGCAAGAGGCTCGTCAGCGCGGACTCACGTCATTTGCCGA
GAGTGAATTGCAGAATTATAAAGAAGATGACAGTGCTATGTCTTTGTTTC
GCACGATTTATAAAGACGCTGATGACGATATGCGGCGGGCAATGATGAAA
AGCTACAGTGAAAGTGGAGGAAAGGTGTTGTCAACGAACTGGGATGAAGT
GCGGAAAGAGAAGGTCACGTACAAGGATGAAGAATAG
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protein sequence of Gchil2197.t1

>Gchil2197.t1 ID=Gchil2197.t1|Name=Gchil2197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=379bp
MLALRGRDRTTWKNFSLVLEIDCPNCSNVASLEAADCIESAIFSDSCSQY
FRCKTVVEEVYLVCFRQKSEVESRIHIGSLMSVEEYDQARKVAEQAIKIA
PSHSQSWYWKGAALLKLSRREDAKFSFQKAAMFESDLVKKTNYIDWVNRC
EEEPMEVIDGTAKTVDSKDCSSPKPSPETTPRDAFQGEISKPITTRREWY
QSATYVNIDIYAKNVEKDRSTVVFEENRIHVTLARPNMDDYFFRAELFAP
IVTSESSWSASRFKVELKLRKYRQGEVWKALDREAQVLSAQAQAGQESIR
RRDQQEARQRGLTSFAESELQNYKEDDSAMSLFRTIYKDADDDMRRAMMK
SYSESGGKVLSTNWDEVRKEKVTYKDEE*
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mRNA from alignment at tig00000228_pilon:238223..240197+

Legend: polypeptidestart_codonCDSexonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2197.t1 ID=Gchil2197.t1|Name=Gchil2197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1975bp|location=Sequence derived from alignment at tig00000228_pilon:238223..240197+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGCCTTGCGCGGTAGGGATCGAACCACCTGGAAGTACGTCTAAAG
GCAGAGGCTCGATCTTTTTTATGCTCACAGCTGTCTAATGAGTTTATCGT
GTTCCTTTCCTCTTTTGAAAGAAACTTTTCTCTGGTGCTCGAGATTGATT
GTCCAAACTGTTCTAACGTAGCTTCTTTGGAAGCCGCTGACTGCATTGAA
TCAGCCATTTTCTCTGATTCTTGTTCTCAGTACTTCAGGTGTAAAACAGT
TGTCGAGGAAGTGTACCTTGTATGTTTCAGACAGAAGAGTGAAGTAGAGA
GCCGCATTCACATCGGGTACGTCACAGGTTTCAGCCAACCGTCCTTCGAT
CAAGTTCTGGGAACCGACCTGCTCATGGGAAATGGGGAATGCGCGCCTTG
CGGAATCATGAGGGTAAGGACCTATGGCGGATGTAGTTATGGATTCTACT
GTAGGTCGTTCAAATCAATGCATCGAAGATGGTCGCCCTGCAGGAGTCGT
TTTGCTTTGTACACGTAGCACAATTGTATTGCAAATGCTTGTGGAACGTT
TTTTTTTAGAAATTATTATTTTTACACTGTTTAGGTCTCGAGTCATATAA
CAGGAAGTGCCTCGCGTGATCCCACATAGACTACGTCGAATTTTGCGCAT
CCTCCGCGCCGGCGATTGCTGTTAAACGCCATCTTTCATCTCTATGCAAA
ATTCGGAAGTTGGCCAAGATTTCTCGTGGGGGGTTTGAAGCCTGCGACCA
TCTATTCTGATTTTGAGCCTTGACTACCTTGGTTTTTCAGATTCAGTGCC
CATCTGTGTCTCCGAAGCCTATCGAATTCTGATAGACTTTCCTTTGTGTA
GATCTGAAAGCGACCACAACCCGAAGAAGTGGCCAGACTACAAAGCGAAG
GCCTCTGTTTTCGTAAATGGCTGAAAGCGCGATCAAAGACTCGTTGAAAT
TCGCAGAGGCAGGCAAAAATGCTGTTGAGGCGGGCAACTACGTTGACGCT
GCCAGATCGTTTGCCTCTGCCTCAGAGGTATGTATGAAAGGGCTTTTAGA
ACTATATTGTGCACATGCAAGCTCGCTGATGTCTGTAGAAGAATATGATC
AAGCAAGGAAAGTTGCTGAACAGGCAATCAAGATTGCTCCGAGCCATAGT
CAGTCTTGGTACTGGAAAGGAGCGGCACTTCTCAAGCTGAGCCGCCGCGA
AGACGCGAAGTTTTCCTTTCAGAAAGCGGCAATGTTCGAGAGTGATCTTG
TGAAGAAAACCAATTATATTGACTGGGTGAATCGATGTGAAGAGGAACCG
ATGGAAGTCATTGATGGGACTGCAAAGACCGTGGATTCAAAGGATTGCTC
GAGTCCTAAACCCTCTCCTGAGACGACACCACGTGACGCTTTTCAAGGCG
AGATATCGAAACCAATCACAACTCGAAGGGAATGGTATCAGTCCGCAACG
TATGTAAACATTGATATATATGCTAAGAATGTGGAAAAAGACCGCAGCAC
GGTAGTTTTCGAAGAAAACCGAATCCATGTCACATTAGCCCGGCCCAATA
TGGACGATTACTTTTTTAGGGCGGAGTTGTTCGCGCCGATTGTAACTTCG
GAGAGCTCTTGGAGTGCAAGCCGATTCAAGGTAGAGTTAAAGCTGAGAAA
ATATCGGCAGGGAGAAGTTTGGAAGGCTCTGGATAGAGAAGCTCAAGTTC
TTTCAGCTCAAGCCCAAGCTGGACAGGAGTCTATTAGACGCCGGGATCAG
CAAGAGGCTCGTCAGCGCGGACTCACGTCATTTGCCGAGAGTGAATTGCA
GAATTATAAAGAAGATGACAGTGCTATGTCTTTGTTTCGCACGATTTATA
AAGACGCTGATGACGATATGCGGCGGGCAATGATGAAAAGCTACAGTGAA
AGTGGAGGAAAGGTGTTGTCAACGAACTGGGATGAAGTGCGGAAAGAGAA
GGTCACGTACAAGGATGAAGAATAG
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Coding sequence (CDS) from alignment at tig00000228_pilon:238223..240197+

>Gchil2197.t1 ID=Gchil2197.t1|Name=Gchil2197.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1137bp|location=Sequence derived from alignment at tig00000228_pilon:238223..240197+ (Gracilaria chilensis NLEC103_M9 male)
ATGCTTGCCTTGCGCGGTAGGGATCGAACCACCTGGAAAAACTTTTCTCT
GGTGCTCGAGATTGATTGTCCAAACTGTTCTAACGTAGCTTCTTTGGAAG
CCGCTGACTGCATTGAATCAGCCATTTTCTCTGATTCTTGTTCTCAGTAC
TTCAGGTGTAAAACAGTTGTCGAGGAAGTGTACCTTGTATGTTTCAGACA
GAAGAGTGAAGTAGAGAGCCGCATTCACATCGGCTCGCTGATGTCTGTAG
AAGAATATGATCAAGCAAGGAAAGTTGCTGAACAGGCAATCAAGATTGCT
CCGAGCCATAGTCAGTCTTGGTACTGGAAAGGAGCGGCACTTCTCAAGCT
GAGCCGCCGCGAAGACGCGAAGTTTTCCTTTCAGAAAGCGGCAATGTTCG
AGAGTGATCTTGTGAAGAAAACCAATTATATTGACTGGGTGAATCGATGT
GAAGAGGAACCGATGGAAGTCATTGATGGGACTGCAAAGACCGTGGATTC
AAAGGATTGCTCGAGTCCTAAACCCTCTCCTGAGACGACACCACGTGACG
CTTTTCAAGGCGAGATATCGAAACCAATCACAACTCGAAGGGAATGGTAT
CAGTCCGCAACGTATGTAAACATTGATATATATGCTAAGAATGTGGAAAA
AGACCGCAGCACGGTAGTTTTCGAAGAAAACCGAATCCATGTCACATTAG
CCCGGCCCAATATGGACGATTACTTTTTTAGGGCGGAGTTGTTCGCGCCG
ATTGTAACTTCGGAGAGCTCTTGGAGTGCAAGCCGATTCAAGGTAGAGTT
AAAGCTGAGAAAATATCGGCAGGGAGAAGTTTGGAAGGCTCTGGATAGAG
AAGCTCAAGTTCTTTCAGCTCAAGCCCAAGCTGGACAGGAGTCTATTAGA
CGCCGGGATCAGCAAGAGGCTCGTCAGCGCGGACTCACGTCATTTGCCGA
GAGTGAATTGCAGAATTATAAAGAAGATGACAGTGCTATGTCTTTGTTTC
GCACGATTTATAAAGACGCTGATGACGATATGCGGCGGGCAATGATGAAA
AGCTACAGTGAAAGTGGAGGAAAGGTGTTGTCAACGAACTGGGATGAAGT
GCGGAAAGAGAAGGTCACGTACAAGGATGAAGAATAG
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