Gchil2192.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2192.t1
Unique NameGchil2192.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length285
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:230656..231810 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog1173024.KI912154_gene1156
PFAMsGlyco_transf_4,Glycos_transf_1,S6PP
Max annot lvl1117|Cyanobacteria
KEGG rclassRC00005,RC00017,RC00028,RC02748
KEGG koko:K00696,ko:K07024
KEGG ReactionR00766,R00805,R06211
KEGG Pathwayko00500,ko01100,map00500,map01100
Evalue1.55e-08
EggNOG OGsCOG0561@1|root,COG0561@2|Bacteria,1G27M@1117|Cyanobacteria,1JI2P@1189|Stigonemataceae
EC2.4.1.14,3.1.3.24
DescriptionSucrose-6F-phosphate phosphohydrolase
COG categoryS
CAZyGT4
BiGG ReactioniJN678.slr0953
BRITEko00000,ko00001,ko01000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2192Gchil2192Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 230656..231810 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2192.t1Gchil2192.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 230656..231810 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2192.t1.stop1Gchil2192.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 230656..230658 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2192.t1.CDS1Gchil2192.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 230656..230722 -
Gchil2192.t1.CDS2Gchil2192.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 230944..230983 -
Gchil2192.t1.CDS3Gchil2192.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 231063..231810 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2192.t1.exon1Gchil2192.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 230656..230722 -
Gchil2192.t1.exon2Gchil2192.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 230944..230983 -
Gchil2192.t1.exon3Gchil2192.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 231063..231810 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2192.t1.intron1Gchil2192.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 230723..230943 -
Gchil2192.t1.intron2Gchil2192.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 230984..231062 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2192.t1.start1Gchil2192.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 231808..231810 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2192.t1 ID=Gchil2192.t1|Name=Gchil2192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=285bp
MMAAFIARPFPIAERSYCRRSVPRSSRRPRRPRRPRPPRCVATKLLVVDL
QELLRHAPPHELNQFSERVQVERNSSESGTYLLYSSRSGYAPSVKSIHDA
RLVEPDALAVLDGTELYQRSYRTPDPLWASNVRKDWAPKPIQWIVATFFG
DHLELVETTEEYQLLFRCKPGVALSDLCSQLTGKLREMGIASRVNLYDGD
RHITVTPAVSGASELVAFCQTMLGIEQKNTFVFGNDHLVETCVRGKANFE
LYLMEFYTTLCSSLTERTCEQPKCPHLEIPEHIF*
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spliced messenger RNA

>Gchil2192.t1 ID=Gchil2192.t1|Name=Gchil2192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=855bp|location=Sequence derived from alignment at tig00000228_pilon:230656..231810- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATGGCTGCGTTCATTGCGCGGCCCTTCCCCATCGCGGAGCGCTCTTA
CTGTCGTCGCAGCGTGCCGCGCTCTTCACGTCGTCCGCGCCGTCCGCGTC
GTCCGCGCCCCCCGCGCTGCGTTGCTACCAAGCTGCTCGTCGTCGACTTG
CAGGAGTTGCTGCGCCATGCCCCGCCCCACGAGCTCAACCAGTTTTCCGA
GCGCGTGCAGGTGGAGCGAAACTCTTCGGAAAGCGGTACGTACTTACTGT
ACAGCTCGCGCTCGGGTTACGCTCCTTCTGTCAAATCGATCCACGACGCG
CGCCTCGTCGAACCGGACGCCCTGGCTGTCTTGGATGGCACCGAGTTGTA
CCAGCGTTCGTATCGCACCCCGGATCCGCTTTGGGCAAGTAACGTCAGAA
AGGACTGGGCTCCGAAGCCTATACAATGGATTGTGGCCACGTTTTTCGGT
GATCATTTAGAGCTCGTGGAAACCACCGAGGAGTATCAACTGCTGTTTCG
ATGCAAACCCGGTGTAGCTCTTTCTGATTTGTGTTCTCAGCTTACGGGAA
AGCTTCGTGAAATGGGCATTGCTTCGCGCGTCAACCTTTATGACGGTGAT
CGTCACATCACCGTCACCCCGGCTGTCTCGGGCGCGTCTGAGCTCGTCGC
GTTTTGTCAGACCATGCTGGGCATTGAACAAAAGAACACCTTTGTGTTTG
GAAATGATCACTTGGTTGAAACTTGTGTCAGGGGAAAGGCCAATTTTGAG
CTTTACTTGATGGAGTTCTACACCACGCTGTGTTCTAGTTTGACGGAGCG
CACTTGCGAACAACCCAAATGCCCACACCTTGAAATACCCGAACACATAT
TTTGA
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protein sequence of Gchil2192.t1

>Gchil2192.t1 ID=Gchil2192.t1|Name=Gchil2192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=285bp
MMAAFIARPFPIAERSYCRRSVPRSSRRPRRPRRPRPPRCVATKLLVVDL
QELLRHAPPHELNQFSERVQVERNSSESGTYLLYSSRSGYAPSVKSIHDA
RLVEPDALAVLDGTELYQRSYRTPDPLWASNVRKDWAPKPIQWIVATFFG
DHLELVETTEEYQLLFRCKPGVALSDLCSQLTGKLREMGIASRVNLYDGD
RHITVTPAVSGASELVAFCQTMLGIEQKNTFVFGNDHLVETCVRGKANFE
LYLMEFYTTLCSSLTERTCEQPKCPHLEIPEHIF*
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mRNA from alignment at tig00000228_pilon:230656..231810-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2192.t1 ID=Gchil2192.t1|Name=Gchil2192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1155bp|location=Sequence derived from alignment at tig00000228_pilon:230656..231810- (Gracilaria chilensis NLEC103_M9 male)
ATGATGGCTGCGTTCATTGCGCGGCCCTTCCCCATCGCGGAGCGCTCTTA
CTGTCGTCGCAGCGTGCCGCGCTCTTCACGTCGTCCGCGCCGTCCGCGTC
GTCCGCGCCCCCCGCGCTGCGTTGCTACCAAGCTGCTCGTCGTCGACTTG
CAGGAGTTGCTGCGCCATGCCCCGCCCCACGAGCTCAACCAGTTTTCCGA
GCGCGTGCAGGTGGAGCGAAACTCTTCGGAAAGCGGTACGTACTTACTGT
ACAGCTCGCGCTCGGGTTACGCTCCTTCTGTCAAATCGATCCACGACGCG
CGCCTCGTCGAACCGGACGCCCTGGCTGTCTTGGATGGCACCGAGTTGTA
CCAGCGTTCGTATCGCACCCCGGATCCGCTTTGGGCAAGTAACGTCAGAA
AGGACTGGGCTCCGAAGCCTATACAATGGATTGTGGCCACGTTTTTCGGT
GATCATTTAGAGCTCGTGGAAACCACCGAGGAGTATCAACTGCTGTTTCG
ATGCAAACCCGGTGTAGCTCTTTCTGATTTGTGTTCTCAGCTTACGGGAA
AGCTTCGTGAAATGGGCATTGCTTCGCGCGTCAACCTTTATGACGGTGAT
CGTCACATCACCGTCACCCCGGCTGTCTCGGGCGCGTCTGAGCTCGTCGC
GTTTTGTCAGACCATGCTGGGCATTGAACAAAAGAACACCTTTGTGTTTG
GAAATGATCACTTGGTTGAAACTTGTGTCAGGGGAAAGGCCAATTTTGGT
ATGTGTCCTGCCGAATCCGACAGTCGTTGGGATGGATTTGGTGACCGCGT
CTTTGTTTCCAAGAAAAAAGGAGCCAGAGCTTTACTTGATGGAGTTCTAC
ACCACGCTGTGTTCTAGGTAAGTTTCTCCTACTCTTCTTCGTCTTTGTGT
GTTGTGTGTGTGCGCTCTGTGATGAATACAATTTGAATCTCGTTAATAAT
GACTGCGGGTTCAATGCTCGCAGCGTGAGCTAAACTCAAAATCCATTATG
ATCTGAGAGACGCTGTTGGAATCACCATGACGATTGTACCTCACTTGTGG
ACCATCAACCTAACTGGCGTCTGTTTTTTTTTTTCTAGTTTGACGGAGCG
CACTTGCGAACAACCCAAATGCCCACACCTTGAAATACCCGAACACATAT
TTTGA
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Coding sequence (CDS) from alignment at tig00000228_pilon:230656..231810-

>Gchil2192.t1 ID=Gchil2192.t1|Name=Gchil2192.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=855bp|location=Sequence derived from alignment at tig00000228_pilon:230656..231810- (Gracilaria chilensis NLEC103_M9 male)
ATGATGGCTGCGTTCATTGCGCGGCCCTTCCCCATCGCGGAGCGCTCTTA
CTGTCGTCGCAGCGTGCCGCGCTCTTCACGTCGTCCGCGCCGTCCGCGTC
GTCCGCGCCCCCCGCGCTGCGTTGCTACCAAGCTGCTCGTCGTCGACTTG
CAGGAGTTGCTGCGCCATGCCCCGCCCCACGAGCTCAACCAGTTTTCCGA
GCGCGTGCAGGTGGAGCGAAACTCTTCGGAAAGCGGTACGTACTTACTGT
ACAGCTCGCGCTCGGGTTACGCTCCTTCTGTCAAATCGATCCACGACGCG
CGCCTCGTCGAACCGGACGCCCTGGCTGTCTTGGATGGCACCGAGTTGTA
CCAGCGTTCGTATCGCACCCCGGATCCGCTTTGGGCAAGTAACGTCAGAA
AGGACTGGGCTCCGAAGCCTATACAATGGATTGTGGCCACGTTTTTCGGT
GATCATTTAGAGCTCGTGGAAACCACCGAGGAGTATCAACTGCTGTTTCG
ATGCAAACCCGGTGTAGCTCTTTCTGATTTGTGTTCTCAGCTTACGGGAA
AGCTTCGTGAAATGGGCATTGCTTCGCGCGTCAACCTTTATGACGGTGAT
CGTCACATCACCGTCACCCCGGCTGTCTCGGGCGCGTCTGAGCTCGTCGC
GTTTTGTCAGACCATGCTGGGCATTGAACAAAAGAACACCTTTGTGTTTG
GAAATGATCACTTGGTTGAAACTTGTGTCAGGGGAAAGGCCAATTTTGAG
CTTTACTTGATGGAGTTCTACACCACGCTGTGTTCTAGTTTGACGGAGCG
CACTTGCGAACAACCCAAATGCCCACACCTTGAAATACCCGAACACATAT
TTTGA
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