Gchil2190.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2190.t1
Unique NameGchil2190.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length498
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:223549..225125 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005703842.1
PFAMsGlyco_transf_34
Max annot lvl2759|Eukaryota
Evalue7.71e-105
EggNOG OGs2EAHV@1|root,2SGRN@2759|Eukaryota
Descriptiongalactosyl transferase GMA12/MNN10 family
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2190Gchil2190Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 223549..225125 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2190.t1Gchil2190.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 223549..225125 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2190.t1.stop1Gchil2190.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 223549..223551 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2190.t1.CDS1Gchil2190.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 223549..224517 -
Gchil2190.t1.CDS2Gchil2190.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 224601..225125 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2190.t1.exon1Gchil2190.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 223549..224517 -
Gchil2190.t1.exon2Gchil2190.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 224601..225125 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2190.t1.intron1Gchil2190.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 224518..224600 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2190.t1.start1Gchil2190.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 225123..225125 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2190.t1 ID=Gchil2190.t1|Name=Gchil2190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=498bp
MVLGSWLVRMAFVSFALVALLSAALPMPIAEANLSPRKIALLHMYDAVPF
FGRLGGLTEVNKKRYADRHGYDFVVSSPHKTFGLYKKLDCYADTNLIQVG
PDGSGACWGTDPSFDIDHSRAPTFGKIKLALAACQGRGEAWLLWSDADAM
VINQTTPLESIIDDAYDIILSYDWLMLNAGMLLFKCSEWTKTFLSRVYNA
RQFDGARALDQSSFQEHLDNLTQVERDEHVKVIPKHAMNVYLEEYRAGDF
LVHMAGKLYEATEAGLFAIANQLDILSMVEDVEDVKAFFRTPALLNYYSG
VCAVKYGEKQKGCKPGDERRIFLNESLGSMSYPNRYRHVGLRYYWLGDWK
DKYDVEGWNTKKKELARVSVASERLEEAVRVGETQMREDAMQNEVGRAVL
EIGGENEDSPPQQPQQQQQQQQQLVVAQAGDGEGSEAHVVEIGVRIDAAQ
RSADGGSAARGKGRLTWYAVGSVVAVGAMAVGWLRFCSKKKMWSKIQ*
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spliced messenger RNA

>Gchil2190.t1 ID=Gchil2190.t1|Name=Gchil2190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1494bp|location=Sequence derived from alignment at tig00000228_pilon:223549..225125- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTACTGGGGAGCTGGTTGGTGAGGATGGCATTTGTTTCATTCGCGCT
AGTTGCGCTGCTCAGTGCTGCGCTTCCAATGCCAATAGCGGAGGCCAATC
TCTCTCCGCGAAAGATCGCGCTGTTGCACATGTACGACGCTGTGCCATTC
TTTGGACGCCTTGGTGGCCTCACCGAAGTTAACAAGAAACGATACGCTGA
TCGACACGGATACGATTTTGTTGTTTCATCCCCCCACAAAACTTTTGGAT
TATACAAGAAGCTCGACTGTTACGCGGACACCAATTTGATCCAAGTGGGT
CCCGATGGCTCGGGCGCCTGTTGGGGGACTGACCCAAGCTTTGATATCGA
CCACTCGCGAGCGCCGACGTTTGGAAAGATAAAGCTGGCGCTTGCTGCGT
GTCAGGGGCGGGGTGAGGCGTGGCTTTTGTGGAGTGATGCAGATGCAATG
GTGATAAACCAAACAACGCCGCTTGAATCCATCATTGACGATGCATATGA
CATTATCCTTTCCTACGACTGGTTGATGTTGAATGCGGGCATGCTACTGT
TCAAATGCAGTGAGTGGACGAAAACGTTTTTGAGTCGTGTGTACAATGCG
CGGCAATTTGATGGGGCACGAGCTCTGGATCAAAGTAGCTTTCAAGAGCA
TCTTGACAATCTGACGCAAGTGGAGCGCGACGAACATGTCAAAGTGATAC
CCAAGCATGCAATGAACGTGTATTTGGAGGAATACCGTGCGGGGGACTTT
CTAGTGCACATGGCAGGCAAACTATACGAAGCGACCGAGGCCGGGTTGTT
CGCAATCGCGAATCAGCTGGACATTTTGTCGATGGTGGAGGATGTAGAAG
ACGTGAAGGCATTCTTCCGAACGCCGGCGCTTCTCAACTACTACTCCGGG
GTGTGTGCGGTGAAGTACGGGGAGAAGCAAAAGGGGTGCAAGCCAGGGGA
CGAGCGTCGGATCTTTCTCAACGAAAGTTTGGGGTCTATGTCGTACCCCA
ACCGGTATCGGCACGTGGGGCTTCGGTACTACTGGCTGGGGGACTGGAAG
GACAAGTATGACGTGGAAGGGTGGAACACGAAGAAAAAGGAGTTGGCGAG
GGTGAGTGTTGCATCAGAGAGGCTCGAAGAAGCTGTTCGGGTTGGCGAAA
CGCAAATGAGGGAGGATGCGATGCAAAACGAGGTGGGGCGCGCTGTTCTG
GAGATTGGCGGGGAGAATGAAGACTCGCCGCCGCAGCAGCCACAGCAGCA
ACAGCAGCAACAGCAGCAGCTTGTGGTGGCACAGGCGGGCGACGGGGAGG
GCTCAGAGGCGCATGTTGTGGAGATCGGGGTTCGAATAGATGCGGCGCAA
CGGAGCGCGGACGGAGGGAGCGCAGCGCGGGGCAAAGGGCGGCTGACGTG
GTACGCAGTGGGCAGTGTGGTGGCTGTAGGGGCTATGGCGGTGGGTTGGT
TGCGGTTTTGCAGCAAGAAGAAAATGTGGTCGAAAATTCAGTAG
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protein sequence of Gchil2190.t1

>Gchil2190.t1 ID=Gchil2190.t1|Name=Gchil2190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=498bp
MVLGSWLVRMAFVSFALVALLSAALPMPIAEANLSPRKIALLHMYDAVPF
FGRLGGLTEVNKKRYADRHGYDFVVSSPHKTFGLYKKLDCYADTNLIQVG
PDGSGACWGTDPSFDIDHSRAPTFGKIKLALAACQGRGEAWLLWSDADAM
VINQTTPLESIIDDAYDIILSYDWLMLNAGMLLFKCSEWTKTFLSRVYNA
RQFDGARALDQSSFQEHLDNLTQVERDEHVKVIPKHAMNVYLEEYRAGDF
LVHMAGKLYEATEAGLFAIANQLDILSMVEDVEDVKAFFRTPALLNYYSG
VCAVKYGEKQKGCKPGDERRIFLNESLGSMSYPNRYRHVGLRYYWLGDWK
DKYDVEGWNTKKKELARVSVASERLEEAVRVGETQMREDAMQNEVGRAVL
EIGGENEDSPPQQPQQQQQQQQQLVVAQAGDGEGSEAHVVEIGVRIDAAQ
RSADGGSAARGKGRLTWYAVGSVVAVGAMAVGWLRFCSKKKMWSKIQ*
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mRNA from alignment at tig00000228_pilon:223549..225125-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2190.t1 ID=Gchil2190.t1|Name=Gchil2190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1577bp|location=Sequence derived from alignment at tig00000228_pilon:223549..225125- (Gracilaria chilensis NLEC103_M9 male)
ATGGTACTGGGGAGCTGGTTGGTGAGGATGGCATTTGTTTCATTCGCGCT
AGTTGCGCTGCTCAGTGCTGCGCTTCCAATGCCAATAGCGGAGGCCAATC
TCTCTCCGCGAAAGATCGCGCTGTTGCACATGTACGACGCTGTGCCATTC
TTTGGACGCCTTGGTGGCCTCACCGAAGTTAACAAGAAACGATACGCTGA
TCGACACGGATACGATTTTGTTGTTTCATCCCCCCACAAAACTTTTGGAT
TATACAAGAAGCTCGACTGTTACGCGGACACCAATTTGATCCAAGTGGGT
CCCGATGGCTCGGGCGCCTGTTGGGGGACTGACCCAAGCTTTGATATCGA
CCACTCGCGAGCGCCGACGTTTGGAAAGATAAAGCTGGCGCTTGCTGCGT
GTCAGGGGCGGGGTGAGGCGTGGCTTTTGTGGAGTGATGCAGATGCAATG
GTGATAAACCAAACAACGCCGCTTGAATCCATCATTGACGATGCATATGA
CATTATCCTTTCCTACGACTGGTTGGTATGGTTTTCTTTTGCATTTGTCA
TCGCGAAGATTAGCAGGATGCAACAACTAACTAGTGCGAATGTTTGTGTG
GGTATCAGATGTTGAATGCGGGCATGCTACTGTTCAAATGCAGTGAGTGG
ACGAAAACGTTTTTGAGTCGTGTGTACAATGCGCGGCAATTTGATGGGGC
ACGAGCTCTGGATCAAAGTAGCTTTCAAGAGCATCTTGACAATCTGACGC
AAGTGGAGCGCGACGAACATGTCAAAGTGATACCCAAGCATGCAATGAAC
GTGTATTTGGAGGAATACCGTGCGGGGGACTTTCTAGTGCACATGGCAGG
CAAACTATACGAAGCGACCGAGGCCGGGTTGTTCGCAATCGCGAATCAGC
TGGACATTTTGTCGATGGTGGAGGATGTAGAAGACGTGAAGGCATTCTTC
CGAACGCCGGCGCTTCTCAACTACTACTCCGGGGTGTGTGCGGTGAAGTA
CGGGGAGAAGCAAAAGGGGTGCAAGCCAGGGGACGAGCGTCGGATCTTTC
TCAACGAAAGTTTGGGGTCTATGTCGTACCCCAACCGGTATCGGCACGTG
GGGCTTCGGTACTACTGGCTGGGGGACTGGAAGGACAAGTATGACGTGGA
AGGGTGGAACACGAAGAAAAAGGAGTTGGCGAGGGTGAGTGTTGCATCAG
AGAGGCTCGAAGAAGCTGTTCGGGTTGGCGAAACGCAAATGAGGGAGGAT
GCGATGCAAAACGAGGTGGGGCGCGCTGTTCTGGAGATTGGCGGGGAGAA
TGAAGACTCGCCGCCGCAGCAGCCACAGCAGCAACAGCAGCAACAGCAGC
AGCTTGTGGTGGCACAGGCGGGCGACGGGGAGGGCTCAGAGGCGCATGTT
GTGGAGATCGGGGTTCGAATAGATGCGGCGCAACGGAGCGCGGACGGAGG
GAGCGCAGCGCGGGGCAAAGGGCGGCTGACGTGGTACGCAGTGGGCAGTG
TGGTGGCTGTAGGGGCTATGGCGGTGGGTTGGTTGCGGTTTTGCAGCAAG
AAGAAAATGTGGTCGAAAATTCAGTAG
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Coding sequence (CDS) from alignment at tig00000228_pilon:223549..225125-

>Gchil2190.t1 ID=Gchil2190.t1|Name=Gchil2190.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1494bp|location=Sequence derived from alignment at tig00000228_pilon:223549..225125- (Gracilaria chilensis NLEC103_M9 male)
ATGGTACTGGGGAGCTGGTTGGTGAGGATGGCATTTGTTTCATTCGCGCT
AGTTGCGCTGCTCAGTGCTGCGCTTCCAATGCCAATAGCGGAGGCCAATC
TCTCTCCGCGAAAGATCGCGCTGTTGCACATGTACGACGCTGTGCCATTC
TTTGGACGCCTTGGTGGCCTCACCGAAGTTAACAAGAAACGATACGCTGA
TCGACACGGATACGATTTTGTTGTTTCATCCCCCCACAAAACTTTTGGAT
TATACAAGAAGCTCGACTGTTACGCGGACACCAATTTGATCCAAGTGGGT
CCCGATGGCTCGGGCGCCTGTTGGGGGACTGACCCAAGCTTTGATATCGA
CCACTCGCGAGCGCCGACGTTTGGAAAGATAAAGCTGGCGCTTGCTGCGT
GTCAGGGGCGGGGTGAGGCGTGGCTTTTGTGGAGTGATGCAGATGCAATG
GTGATAAACCAAACAACGCCGCTTGAATCCATCATTGACGATGCATATGA
CATTATCCTTTCCTACGACTGGTTGATGTTGAATGCGGGCATGCTACTGT
TCAAATGCAGTGAGTGGACGAAAACGTTTTTGAGTCGTGTGTACAATGCG
CGGCAATTTGATGGGGCACGAGCTCTGGATCAAAGTAGCTTTCAAGAGCA
TCTTGACAATCTGACGCAAGTGGAGCGCGACGAACATGTCAAAGTGATAC
CCAAGCATGCAATGAACGTGTATTTGGAGGAATACCGTGCGGGGGACTTT
CTAGTGCACATGGCAGGCAAACTATACGAAGCGACCGAGGCCGGGTTGTT
CGCAATCGCGAATCAGCTGGACATTTTGTCGATGGTGGAGGATGTAGAAG
ACGTGAAGGCATTCTTCCGAACGCCGGCGCTTCTCAACTACTACTCCGGG
GTGTGTGCGGTGAAGTACGGGGAGAAGCAAAAGGGGTGCAAGCCAGGGGA
CGAGCGTCGGATCTTTCTCAACGAAAGTTTGGGGTCTATGTCGTACCCCA
ACCGGTATCGGCACGTGGGGCTTCGGTACTACTGGCTGGGGGACTGGAAG
GACAAGTATGACGTGGAAGGGTGGAACACGAAGAAAAAGGAGTTGGCGAG
GGTGAGTGTTGCATCAGAGAGGCTCGAAGAAGCTGTTCGGGTTGGCGAAA
CGCAAATGAGGGAGGATGCGATGCAAAACGAGGTGGGGCGCGCTGTTCTG
GAGATTGGCGGGGAGAATGAAGACTCGCCGCCGCAGCAGCCACAGCAGCA
ACAGCAGCAACAGCAGCAGCTTGTGGTGGCACAGGCGGGCGACGGGGAGG
GCTCAGAGGCGCATGTTGTGGAGATCGGGGTTCGAATAGATGCGGCGCAA
CGGAGCGCGGACGGAGGGAGCGCAGCGCGGGGCAAAGGGCGGCTGACGTG
GTACGCAGTGGGCAGTGTGGTGGCTGTAGGGGCTATGGCGGTGGGTTGGT
TGCGGTTTTGCAGCAAGAAGAAAATGTGGTCGAAAATTCAGTAG
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