Gchil2189.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2189.t1
Unique NameGchil2189.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length538
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:219414..221570 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog130081.XP_005707533.1
PFAMsPI3_PI4_kinase,ubiquitin
Max annot lvl2759|Eukaryota
Evalue1.99e-30
EggNOG OGsKOG2381@1|root,KOG2381@2759|Eukaryota
Description1-phosphatidylinositol 4-kinase activity
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2189Gchil2189Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 219414..221570 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2189.t1Gchil2189.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 219414..221570 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2189.t1.stop1Gchil2189.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 219414..219416 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2189.t1.CDS1Gchil2189.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 219414..219980 -
Gchil2189.t1.CDS2Gchil2189.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 220524..221570 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2189.t1.exon1Gchil2189.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 219414..219980 -
Gchil2189.t1.exon2Gchil2189.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 220524..221570 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2189.t1.intron1Gchil2189.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 219981..220523 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2189.t1.start1Gchil2189.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 221568..221570 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2189.t1 ID=Gchil2189.t1|Name=Gchil2189.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=538bp
MSSSIPIPSRAAASCSPSLSSPPPSALLGKSLPSRHSLYAPPSPAPTLPL
RSSQDDLATIVWPPRPPPSFQLVSRAARKWQHARHPPLSAAPTTSKRSSR
FDPWDFSEVAAATAEVKTAFQRGSARAERPPREGVSGTYFIRRNESKGAV
LCVFKPIDEEAIDIEMSPTMPKAHSTGSPAVPSDLDFSLGPAFGVTSPKP
PSPGVGQTFTRTTSLSSDSEFDSRFSRASGFYPGEGAYKEVAAYLLDHER
FARVPQTALAMWSDIPHKDEFDDRSPRHSFSSDGADSLPYADHFLTEGNS
TATEQHQDGSHLRTKMGAFQVYVENVGDADDYGPGVFDRDQVHRIAVLDD
YIVKYAGRRIHDVVSRIAARKEEEKSHRQRKSGRGLTRARSIPEFGALGI
GARPLHTLLRQGSVPGVVPTNSPVSSPRQVPAEGAYHHHTHSLGSALPRY
SQTAIRAPPIQIPINDGRIERISIPEPVGSGAFHDGLGRTEDEEDDDRLA
REVGNVRLGSLASLFKEERKSSPVAPLDMMLWESESS*
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spliced messenger RNA

>Gchil2189.t1 ID=Gchil2189.t1|Name=Gchil2189.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1614bp|location=Sequence derived from alignment at tig00000228_pilon:219414..221570- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCATCCTCCATCCCAATACCCTCACGTGCTGCTGCTTCTTGTTCGCC
CTCCCTCTCCTCACCACCCCCATCCGCCTTGCTTGGTAAGAGCCTCCCGT
CGCGACACTCACTCTATGCCCCTCCCTCGCCGGCCCCGACTCTGCCGCTT
CGCTCCTCGCAGGATGATCTCGCAACCATTGTGTGGCCGCCTCGCCCGCC
CCCGTCCTTCCAACTCGTCTCGCGTGCCGCCAGAAAGTGGCAGCACGCCC
GACACCCCCCCCTTTCGGCTGCCCCCACCACCTCCAAACGAAGCTCTCGC
TTCGATCCCTGGGACTTTTCGGAAGTGGCCGCTGCTACCGCCGAGGTCAA
GACCGCCTTCCAGAGAGGCAGCGCCCGCGCGGAGCGTCCACCAAGGGAGG
GCGTCAGTGGCACCTATTTTATTCGTCGCAATGAGAGCAAGGGTGCTGTG
CTGTGCGTCTTCAAACCCATTGACGAGGAGGCTATCGACATTGAAATGTC
CCCGACTATGCCCAAAGCCCACTCCACTGGCTCCCCGGCCGTCCCGAGCG
ACCTTGACTTCTCTTTGGGACCGGCTTTTGGCGTCACCTCCCCCAAGCCC
CCGTCGCCCGGCGTCGGTCAGACTTTCACGCGCACCACCAGCCTCAGCTC
CGACTCGGAGTTTGACTCGCGCTTCTCGCGCGCCTCGGGCTTCTACCCGG
GAGAGGGTGCCTACAAAGAGGTGGCCGCCTATCTTTTGGATCATGAGCGC
TTTGCGCGCGTGCCACAAACCGCGCTCGCCATGTGGTCCGACATTCCGCA
CAAGGATGAATTTGATGACCGTTCCCCGCGACATTCCTTCTCGTCGGATG
GCGCTGATTCACTCCCGTATGCTGACCACTTTCTGACCGAGGGCAACTCC
ACCGCCACGGAACAGCACCAGGATGGCTCGCATTTGCGCACCAAGATGGG
CGCTTTCCAGGTGTACGTGGAGAATGTCGGCGATGCCGATGACTATGGGC
CGGGTGTCTTTGACCGCGACCAAGTTCATCGCATTGCTGTGCTTGACGAT
TACATTGTCAAGTATGCCGGGCGACGCATTCACGACGTGGTGTCCCGGAT
AGCCGCCCGCAAGGAAGAGGAGAAAAGCCACCGGCAGCGAAAGAGCGGCC
GTGGTCTGACGCGCGCGCGCTCCATCCCGGAGTTTGGCGCGCTTGGTATT
GGGGCCAGGCCGTTGCACACGCTGCTTCGCCAGGGGTCGGTGCCGGGAGT
TGTCCCGACCAATTCGCCGGTGTCTTCGCCAAGGCAGGTGCCTGCAGAGG
GTGCGTATCATCACCACACGCATTCGCTGGGGTCGGCACTGCCACGCTAC
TCGCAAACTGCTATTCGTGCGCCACCGATACAAATTCCTATTAATGATGG
TCGTATCGAGAGGATTTCTATCCCTGAACCAGTGGGAAGTGGCGCATTTC
ATGATGGGCTGGGAAGGACGGAGGATGAGGAAGATGACGACCGATTGGCT
CGCGAAGTTGGGAACGTTCGCCTTGGGTCGCTTGCATCGCTGTTCAAGGA
AGAACGGAAATCGTCTCCAGTTGCCCCGCTGGATATGATGTTGTGGGAAT
CGGAGTCATCATAG
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protein sequence of Gchil2189.t1

>Gchil2189.t1 ID=Gchil2189.t1|Name=Gchil2189.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=538bp
MSSSIPIPSRAAASCSPSLSSPPPSALLGKSLPSRHSLYAPPSPAPTLPL
RSSQDDLATIVWPPRPPPSFQLVSRAARKWQHARHPPLSAAPTTSKRSSR
FDPWDFSEVAAATAEVKTAFQRGSARAERPPREGVSGTYFIRRNESKGAV
LCVFKPIDEEAIDIEMSPTMPKAHSTGSPAVPSDLDFSLGPAFGVTSPKP
PSPGVGQTFTRTTSLSSDSEFDSRFSRASGFYPGEGAYKEVAAYLLDHER
FARVPQTALAMWSDIPHKDEFDDRSPRHSFSSDGADSLPYADHFLTEGNS
TATEQHQDGSHLRTKMGAFQVYVENVGDADDYGPGVFDRDQVHRIAVLDD
YIVKYAGRRIHDVVSRIAARKEEEKSHRQRKSGRGLTRARSIPEFGALGI
GARPLHTLLRQGSVPGVVPTNSPVSSPRQVPAEGAYHHHTHSLGSALPRY
SQTAIRAPPIQIPINDGRIERISIPEPVGSGAFHDGLGRTEDEEDDDRLA
REVGNVRLGSLASLFKEERKSSPVAPLDMMLWESESS*
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mRNA from alignment at tig00000228_pilon:219414..221570-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2189.t1 ID=Gchil2189.t1|Name=Gchil2189.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2157bp|location=Sequence derived from alignment at tig00000228_pilon:219414..221570- (Gracilaria chilensis NLEC103_M9 male)
ATGTCATCCTCCATCCCAATACCCTCACGTGCTGCTGCTTCTTGTTCGCC
CTCCCTCTCCTCACCACCCCCATCCGCCTTGCTTGGTAAGAGCCTCCCGT
CGCGACACTCACTCTATGCCCCTCCCTCGCCGGCCCCGACTCTGCCGCTT
CGCTCCTCGCAGGATGATCTCGCAACCATTGTGTGGCCGCCTCGCCCGCC
CCCGTCCTTCCAACTCGTCTCGCGTGCCGCCAGAAAGTGGCAGCACGCCC
GACACCCCCCCCTTTCGGCTGCCCCCACCACCTCCAAACGAAGCTCTCGC
TTCGATCCCTGGGACTTTTCGGAAGTGGCCGCTGCTACCGCCGAGGTCAA
GACCGCCTTCCAGAGAGGCAGCGCCCGCGCGGAGCGTCCACCAAGGGAGG
GCGTCAGTGGCACCTATTTTATTCGTCGCAATGAGAGCAAGGGTGCTGTG
CTGTGCGTCTTCAAACCCATTGACGAGGAGGCTATCGACATTGAAATGTC
CCCGACTATGCCCAAAGCCCACTCCACTGGCTCCCCGGCCGTCCCGAGCG
ACCTTGACTTCTCTTTGGGACCGGCTTTTGGCGTCACCTCCCCCAAGCCC
CCGTCGCCCGGCGTCGGTCAGACTTTCACGCGCACCACCAGCCTCAGCTC
CGACTCGGAGTTTGACTCGCGCTTCTCGCGCGCCTCGGGCTTCTACCCGG
GAGAGGGTGCCTACAAAGAGGTGGCCGCCTATCTTTTGGATCATGAGCGC
TTTGCGCGCGTGCCACAAACCGCGCTCGCCATGTGGTCCGACATTCCGCA
CAAGGATGAATTTGATGACCGTTCCCCGCGACATTCCTTCTCGTCGGATG
GCGCTGATTCACTCCCGTATGCTGACCACTTTCTGACCGAGGGCAACTCC
ACCGCCACGGAACAGCACCAGGATGGCTCGCATTTGCGCACCAAGATGGG
CGCTTTCCAGGTGTACGTGGAGAATGTCGGCGATGCCGATGACTATGGGC
CGGGTGTCTTTGACCGCGACCAAGTTCATCGCATTGCTGTGCTTGACGTT
CGTACACTCAATCACGATCGCCACGGAGGCAACGTGCTTGTCACACGATC
GAGGTCGCCGGACAGGCGCTACGACCTCGTGCCCATTGACCATGGCTACA
TTCTGCCGGATGTGGTGCAGTCTGTGCCGTGGCCCATCTGGATGGATTGG
CCGATGATTCGCCAGCCGCTCTCCGACAGTGTCAAGGCCTACATTGAGTG
TCTTGACGCAGAGTCGGAGTCTCGCATCTTGGACGATGAGCTTGATGGCA
AGCTCAGGTCTGGATCCCTGCGCGCTCTCAAGGTGGCTACTATGCTGCTG
CAGAAGGGTGCGGCGGCCGGGCTCACGCTTTACGACATTGGGCTCTTAAT
CTACAGTCGCCGCGGCGACCCTCACTCCAAGTCGGAGCTGGAGAAAATCA
TGATCGAGGCGGAGGAGGCCGGCAGTGCTAGGGAGCGCCATCTCGCTGAG
GAAGTGTATGAGAACAGGAAGAAGAGTGAAGCACTACACAGGCGTCACCA
GAGCATGAATGCAATGCACATTCATGACTCTTACATGGAGGATTACATTG
TCAAGTATGCCGGGCGACGCATTCACGACGTGGTGTCCCGGATAGCCGCC
CGCAAGGAAGAGGAGAAAAGCCACCGGCAGCGAAAGAGCGGCCGTGGTCT
GACGCGCGCGCGCTCCATCCCGGAGTTTGGCGCGCTTGGTATTGGGGCCA
GGCCGTTGCACACGCTGCTTCGCCAGGGGTCGGTGCCGGGAGTTGTCCCG
ACCAATTCGCCGGTGTCTTCGCCAAGGCAGGTGCCTGCAGAGGGTGCGTA
TCATCACCACACGCATTCGCTGGGGTCGGCACTGCCACGCTACTCGCAAA
CTGCTATTCGTGCGCCACCGATACAAATTCCTATTAATGATGGTCGTATC
GAGAGGATTTCTATCCCTGAACCAGTGGGAAGTGGCGCATTTCATGATGG
GCTGGGAAGGACGGAGGATGAGGAAGATGACGACCGATTGGCTCGCGAAG
TTGGGAACGTTCGCCTTGGGTCGCTTGCATCGCTGTTCAAGGAAGAACGG
AAATCGTCTCCAGTTGCCCCGCTGGATATGATGTTGTGGGAATCGGAGTC
ATCATAG
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Coding sequence (CDS) from alignment at tig00000228_pilon:219414..221570-

>Gchil2189.t1 ID=Gchil2189.t1|Name=Gchil2189.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1614bp|location=Sequence derived from alignment at tig00000228_pilon:219414..221570- (Gracilaria chilensis NLEC103_M9 male)
ATGTCATCCTCCATCCCAATACCCTCACGTGCTGCTGCTTCTTGTTCGCC
CTCCCTCTCCTCACCACCCCCATCCGCCTTGCTTGGTAAGAGCCTCCCGT
CGCGACACTCACTCTATGCCCCTCCCTCGCCGGCCCCGACTCTGCCGCTT
CGCTCCTCGCAGGATGATCTCGCAACCATTGTGTGGCCGCCTCGCCCGCC
CCCGTCCTTCCAACTCGTCTCGCGTGCCGCCAGAAAGTGGCAGCACGCCC
GACACCCCCCCCTTTCGGCTGCCCCCACCACCTCCAAACGAAGCTCTCGC
TTCGATCCCTGGGACTTTTCGGAAGTGGCCGCTGCTACCGCCGAGGTCAA
GACCGCCTTCCAGAGAGGCAGCGCCCGCGCGGAGCGTCCACCAAGGGAGG
GCGTCAGTGGCACCTATTTTATTCGTCGCAATGAGAGCAAGGGTGCTGTG
CTGTGCGTCTTCAAACCCATTGACGAGGAGGCTATCGACATTGAAATGTC
CCCGACTATGCCCAAAGCCCACTCCACTGGCTCCCCGGCCGTCCCGAGCG
ACCTTGACTTCTCTTTGGGACCGGCTTTTGGCGTCACCTCCCCCAAGCCC
CCGTCGCCCGGCGTCGGTCAGACTTTCACGCGCACCACCAGCCTCAGCTC
CGACTCGGAGTTTGACTCGCGCTTCTCGCGCGCCTCGGGCTTCTACCCGG
GAGAGGGTGCCTACAAAGAGGTGGCCGCCTATCTTTTGGATCATGAGCGC
TTTGCGCGCGTGCCACAAACCGCGCTCGCCATGTGGTCCGACATTCCGCA
CAAGGATGAATTTGATGACCGTTCCCCGCGACATTCCTTCTCGTCGGATG
GCGCTGATTCACTCCCGTATGCTGACCACTTTCTGACCGAGGGCAACTCC
ACCGCCACGGAACAGCACCAGGATGGCTCGCATTTGCGCACCAAGATGGG
CGCTTTCCAGGTGTACGTGGAGAATGTCGGCGATGCCGATGACTATGGGC
CGGGTGTCTTTGACCGCGACCAAGTTCATCGCATTGCTGTGCTTGACGAT
TACATTGTCAAGTATGCCGGGCGACGCATTCACGACGTGGTGTCCCGGAT
AGCCGCCCGCAAGGAAGAGGAGAAAAGCCACCGGCAGCGAAAGAGCGGCC
GTGGTCTGACGCGCGCGCGCTCCATCCCGGAGTTTGGCGCGCTTGGTATT
GGGGCCAGGCCGTTGCACACGCTGCTTCGCCAGGGGTCGGTGCCGGGAGT
TGTCCCGACCAATTCGCCGGTGTCTTCGCCAAGGCAGGTGCCTGCAGAGG
GTGCGTATCATCACCACACGCATTCGCTGGGGTCGGCACTGCCACGCTAC
TCGCAAACTGCTATTCGTGCGCCACCGATACAAATTCCTATTAATGATGG
TCGTATCGAGAGGATTTCTATCCCTGAACCAGTGGGAAGTGGCGCATTTC
ATGATGGGCTGGGAAGGACGGAGGATGAGGAAGATGACGACCGATTGGCT
CGCGAAGTTGGGAACGTTCGCCTTGGGTCGCTTGCATCGCTGTTCAAGGA
AGAACGGAAATCGTCTCCAGTTGCCCCGCTGGATATGATGTTGTGGGAAT
CGGAGTCATCATAG
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