Gchil2188.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2188.t1
Unique NameGchil2188.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length391
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:217403..218575 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog45157.CMM222CT
Preferred nameSLC25A36
PFAMsMito_carr
Max annot lvl2759|Eukaryota
KEGG koko:K15116
KEGG TC2.A.29.10.4
GOsGO:0000002,GO:0000959,GO:0001558,GO:0002082,GO:0003674,GO:0005215,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005739,GO:0005740,GO:0005743,GO:0006091,GO:0006139,GO:0006140,GO:0006351,GO:0006390,GO:0006725,GO:0006807,GO:0006810,GO:0006811,GO:0006812,GO:0006839,GO:0006862,GO:0006864,GO:0006996,GO:0007005,GO:0007154,GO:0007165,GO:0008150,GO:0008152,GO:0008284,GO:0009058,GO:0009059,GO:0009719,GO:0009725,GO:0009889,GO:0009987,GO:0010033,GO:0010243,GO:0010467,GO:0010564,GO:0015215,GO:0015218,GO:0015605,GO:0015748,GO:0015931,GO:0015932,GO:0015980,GO:0016020,GO:0016021,GO:0016043,GO:0016070,GO:0017004,GO:0017062,GO:0018130,GO:0019219,GO:0019220,GO:0019222,GO:0019438,GO:0019866,GO:0022607,GO:0022857,GO:0023052,GO:0030001,GO:0030302,GO:0030307,GO:0031090,GO:0031224,GO:0031323,GO:0031930,GO:0031966,GO:0031967,GO:0031975,GO:0032774,GO:0032868,GO:0032869,GO:0032870,GO:0033108,GO:0034551,GO:0034622,GO:0034641,GO:0034645,GO:0034654,GO:0040008,GO:0040011,GO:0042127,GO:0042221,GO:0042325,GO:0042391,GO:0043170,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043434,GO:0043467,GO:0043933,GO:0044085,GO:0044237,GO:0044238,GO:0044249,GO:0044260,GO:0044271,GO:0044422,GO:0044424,GO:0044425,GO:0044429,GO:0044444,GO:0044446,GO:0044464,GO:0045333,GO:0045927,GO:0046483,GO:0048311,GO:0048518,GO:0048522,GO:0050789,GO:0050794,GO:0050896,GO:0051128,GO:0051171,GO:0051174,GO:0051179,GO:0051234,GO:0051640,GO:0051641,GO:0051646,GO:0051716,GO:0051726,GO:0051881,GO:0055085,GO:0055114,GO:0062012,GO:0065003,GO:0065007,GO:0065008,GO:0070838,GO:0070887,GO:0071156,GO:0071310,GO:0071375,GO:0071417,GO:0071495,GO:0071702,GO:0071704,GO:0071705,GO:0071840,GO:0072511,GO:0072531,GO:0080090,GO:0090304,GO:0097659,GO:0140053,GO:1900542,GO:1901264,GO:1901360,GO:1901362,GO:1901576,GO:1901652,GO:1901653,GO:1901679,GO:1901698,GO:1901699,GO:1901700,GO:1901701,GO:1903426,GO:1903578,GO:1990314,GO:1990519,GO:1990542,GO:2000377
Evalue7.25e-111
EggNOG OGsCOG4266@1|root,KOG0757@2759|Eukaryota
Descriptionpyrimidine nucleotide transmembrane transporter activity
COG categoryU
BRITEko00000,ko02000
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2188Gchil2188Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 217403..218575 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2188.t1.start1Gchil2188.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 217403..217405 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2188.t1.CDS1Gchil2188.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 217403..218575 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2188.t1.exon1Gchil2188.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 217403..218575 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2188.t1.stop1Gchil2188.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 218573..218575 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2188.t1Gchil2188.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 217403..218575 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2188.t1 ID=Gchil2188.t1|Name=Gchil2188.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=391bp
MRFIPIFGANRQANQHHTQRATSPIHANQVHTKPIPPPTSFKLAPTALAS
KPDVQALANQKQFASLIAGGIAGSFSATITCPMEVVKTHLQASKGGSEVA
LAAKGPFSIARNIARVEGLKGFFRGLMPTLIGILPARATYFWAYATTKSS
LTSRFGESPVVHMLSAAAAGISSNTLTNPIWLMKSRVQLQAGASETNPLV
YKGYRDAMVRIFREEGMAGFFKGLSASYWGVTEGALHFVVYERIKAKLIA
ENRLKIARGDYLRDNAPARDPERLTSLQYLSAAAFSKLVASMATYPHEVV
RLRMREQPKFVGAVPKYRGMIQSLQLIAREEGRKGLYAGMGTHLARVVPN
AALMFFTYEIVVKWIENRQDNRMKTARKPDDIDLKRPKQL*
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spliced messenger RNA

>Gchil2188.t1 ID=Gchil2188.t1|Name=Gchil2188.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000228_pilon:217403..218575+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCGCTTCATTCCGATTTTCGGAGCCAACCGGCAGGCGAATCAGCATCA
TACTCAGCGCGCAACCAGTCCAATCCATGCCAACCAGGTGCATACCAAGC
CAATTCCGCCCCCAACTTCCTTCAAATTGGCCCCCACCGCGTTGGCGTCC
AAACCCGATGTTCAGGCGCTTGCAAACCAGAAGCAATTCGCCTCTCTCAT
TGCCGGCGGAATCGCCGGCTCCTTTTCAGCCACCATAACATGTCCAATGG
AGGTCGTCAAAACCCATCTTCAGGCTTCTAAAGGAGGTTCTGAGGTCGCC
CTCGCTGCGAAGGGTCCCTTTTCAATCGCTAGAAACATTGCTCGCGTGGA
AGGTTTAAAGGGCTTTTTCCGCGGCCTTATGCCCACTTTGATTGGTATAC
TTCCGGCTCGAGCCACCTACTTCTGGGCATATGCTACCACCAAGTCTTCG
CTCACTTCTAGGTTTGGTGAGAGCCCTGTCGTGCACATGCTGTCCGCTGC
TGCCGCTGGAATTTCCTCCAATACTCTCACTAATCCTATCTGGCTTATGA
AATCAAGAGTTCAACTTCAAGCAGGCGCGTCAGAAACCAACCCATTGGTG
TATAAAGGGTATCGAGATGCAATGGTGAGAATATTCCGCGAGGAAGGCAT
GGCAGGTTTTTTCAAAGGTCTCTCAGCGTCGTACTGGGGCGTCACAGAAG
GAGCGCTTCACTTTGTCGTGTACGAAAGAATCAAAGCAAAGCTCATTGCC
GAAAACCGATTGAAGATTGCTCGCGGAGATTATCTTCGAGACAATGCGCC
TGCTCGAGACCCTGAACGTCTCACTTCTCTTCAGTACCTTTCCGCCGCCG
CATTTTCCAAGCTAGTAGCTTCAATGGCTACCTATCCACACGAAGTGGTT
CGACTCAGGATGAGAGAACAACCCAAATTTGTCGGCGCCGTTCCGAAATA
CCGTGGCATGATTCAATCCCTACAACTCATTGCCCGCGAAGAAGGAAGAA
AAGGGCTGTACGCCGGCATGGGAACACATCTTGCACGAGTGGTTCCAAAC
GCCGCCCTCATGTTTTTCACGTACGAAATTGTCGTCAAGTGGATCGAAAA
CAGACAGGACAATCGTATGAAAACTGCCAGGAAACCTGATGACATTGATT
TGAAACGCCCCAAGCAGTTGTAA
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protein sequence of Gchil2188.t1

>Gchil2188.t1 ID=Gchil2188.t1|Name=Gchil2188.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=391bp
MRFIPIFGANRQANQHHTQRATSPIHANQVHTKPIPPPTSFKLAPTALAS
KPDVQALANQKQFASLIAGGIAGSFSATITCPMEVVKTHLQASKGGSEVA
LAAKGPFSIARNIARVEGLKGFFRGLMPTLIGILPARATYFWAYATTKSS
LTSRFGESPVVHMLSAAAAGISSNTLTNPIWLMKSRVQLQAGASETNPLV
YKGYRDAMVRIFREEGMAGFFKGLSASYWGVTEGALHFVVYERIKAKLIA
ENRLKIARGDYLRDNAPARDPERLTSLQYLSAAAFSKLVASMATYPHEVV
RLRMREQPKFVGAVPKYRGMIQSLQLIAREEGRKGLYAGMGTHLARVVPN
AALMFFTYEIVVKWIENRQDNRMKTARKPDDIDLKRPKQL*
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mRNA from alignment at tig00000228_pilon:217403..218575+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2188.t1 ID=Gchil2188.t1|Name=Gchil2188.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1173bp|location=Sequence derived from alignment at tig00000228_pilon:217403..218575+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCTTCATTCCGATTTTCGGAGCCAACCGGCAGGCGAATCAGCATCA
TACTCAGCGCGCAACCAGTCCAATCCATGCCAACCAGGTGCATACCAAGC
CAATTCCGCCCCCAACTTCCTTCAAATTGGCCCCCACCGCGTTGGCGTCC
AAACCCGATGTTCAGGCGCTTGCAAACCAGAAGCAATTCGCCTCTCTCAT
TGCCGGCGGAATCGCCGGCTCCTTTTCAGCCACCATAACATGTCCAATGG
AGGTCGTCAAAACCCATCTTCAGGCTTCTAAAGGAGGTTCTGAGGTCGCC
CTCGCTGCGAAGGGTCCCTTTTCAATCGCTAGAAACATTGCTCGCGTGGA
AGGTTTAAAGGGCTTTTTCCGCGGCCTTATGCCCACTTTGATTGGTATAC
TTCCGGCTCGAGCCACCTACTTCTGGGCATATGCTACCACCAAGTCTTCG
CTCACTTCTAGGTTTGGTGAGAGCCCTGTCGTGCACATGCTGTCCGCTGC
TGCCGCTGGAATTTCCTCCAATACTCTCACTAATCCTATCTGGCTTATGA
AATCAAGAGTTCAACTTCAAGCAGGCGCGTCAGAAACCAACCCATTGGTG
TATAAAGGGTATCGAGATGCAATGGTGAGAATATTCCGCGAGGAAGGCAT
GGCAGGTTTTTTCAAAGGTCTCTCAGCGTCGTACTGGGGCGTCACAGAAG
GAGCGCTTCACTTTGTCGTGTACGAAAGAATCAAAGCAAAGCTCATTGCC
GAAAACCGATTGAAGATTGCTCGCGGAGATTATCTTCGAGACAATGCGCC
TGCTCGAGACCCTGAACGTCTCACTTCTCTTCAGTACCTTTCCGCCGCCG
CATTTTCCAAGCTAGTAGCTTCAATGGCTACCTATCCACACGAAGTGGTT
CGACTCAGGATGAGAGAACAACCCAAATTTGTCGGCGCCGTTCCGAAATA
CCGTGGCATGATTCAATCCCTACAACTCATTGCCCGCGAAGAAGGAAGAA
AAGGGCTGTACGCCGGCATGGGAACACATCTTGCACGAGTGGTTCCAAAC
GCCGCCCTCATGTTTTTCACGTACGAAATTGTCGTCAAGTGGATCGAAAA
CAGACAGGACAATCGTATGAAAACTGCCAGGAAACCTGATGACATTGATT
TGAAACGCCCCAAGCAGTTGTAA
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Coding sequence (CDS) from alignment at tig00000228_pilon:217403..218575+

>Gchil2188.t1 ID=Gchil2188.t1|Name=Gchil2188.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1173bp|location=Sequence derived from alignment at tig00000228_pilon:217403..218575+ (Gracilaria chilensis NLEC103_M9 male)
ATGCGCTTCATTCCGATTTTCGGAGCCAACCGGCAGGCGAATCAGCATCA
TACTCAGCGCGCAACCAGTCCAATCCATGCCAACCAGGTGCATACCAAGC
CAATTCCGCCCCCAACTTCCTTCAAATTGGCCCCCACCGCGTTGGCGTCC
AAACCCGATGTTCAGGCGCTTGCAAACCAGAAGCAATTCGCCTCTCTCAT
TGCCGGCGGAATCGCCGGCTCCTTTTCAGCCACCATAACATGTCCAATGG
AGGTCGTCAAAACCCATCTTCAGGCTTCTAAAGGAGGTTCTGAGGTCGCC
CTCGCTGCGAAGGGTCCCTTTTCAATCGCTAGAAACATTGCTCGCGTGGA
AGGTTTAAAGGGCTTTTTCCGCGGCCTTATGCCCACTTTGATTGGTATAC
TTCCGGCTCGAGCCACCTACTTCTGGGCATATGCTACCACCAAGTCTTCG
CTCACTTCTAGGTTTGGTGAGAGCCCTGTCGTGCACATGCTGTCCGCTGC
TGCCGCTGGAATTTCCTCCAATACTCTCACTAATCCTATCTGGCTTATGA
AATCAAGAGTTCAACTTCAAGCAGGCGCGTCAGAAACCAACCCATTGGTG
TATAAAGGGTATCGAGATGCAATGGTGAGAATATTCCGCGAGGAAGGCAT
GGCAGGTTTTTTCAAAGGTCTCTCAGCGTCGTACTGGGGCGTCACAGAAG
GAGCGCTTCACTTTGTCGTGTACGAAAGAATCAAAGCAAAGCTCATTGCC
GAAAACCGATTGAAGATTGCTCGCGGAGATTATCTTCGAGACAATGCGCC
TGCTCGAGACCCTGAACGTCTCACTTCTCTTCAGTACCTTTCCGCCGCCG
CATTTTCCAAGCTAGTAGCTTCAATGGCTACCTATCCACACGAAGTGGTT
CGACTCAGGATGAGAGAACAACCCAAATTTGTCGGCGCCGTTCCGAAATA
CCGTGGCATGATTCAATCCCTACAACTCATTGCCCGCGAAGAAGGAAGAA
AAGGGCTGTACGCCGGCATGGGAACACATCTTGCACGAGTGGTTCCAAAC
GCCGCCCTCATGTTTTTCACGTACGAAATTGTCGTCAAGTGGATCGAAAA
CAGACAGGACAATCGTATGAAAACTGCCAGGAAACCTGATGACATTGATT
TGAAACGCCCCAAGCAGTTGTAA
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