Gchil2187.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2187.t1
Unique NameGchil2187.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length230
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:215809..216498 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog251229.Chro_5015
Max annot lvl1117|Cyanobacteria
Evalue4.04e-34
EggNOG OGs28PPV@1|root,2ZCC6@2|Bacteria,1G5I9@1117|Cyanobacteria
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2187Gchil2187Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 215809..216498 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2187.t1.stop1Gchil2187.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 215809..215811 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2187.t1.CDS1Gchil2187.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 215809..216498 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2187.t1.exon1Gchil2187.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 215809..216498 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2187.t1.start1Gchil2187.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 216496..216498 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2187.t1Gchil2187.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 215809..216498 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2187.t1 ID=Gchil2187.t1|Name=Gchil2187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=230bp
MSSFLFVSAPLLSSSQAFTTICPSREHAASIGVKPTHQSGSVRTAVRASI
MQDFLAGPSSPPRPRPLYQVIMFTISTNFLWYGWYKYCIEQELRRLTGKG
PGGIGALLPFIVGVTSPLYLPNGAASQLGFASGILWIVAVQYYLYRRINV
LMTENGSSPPLSPWWIVVPGFNLVVGLRSVHFLSVAFGADAHSDPVVDFF
PFLGKDTLGLWELLSTPSLWLSFGKQHDK*
back to top

spliced messenger RNA

>Gchil2187.t1 ID=Gchil2187.t1|Name=Gchil2187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000228_pilon:215809..216498- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCTTCCTTTCTCTTCGTTTCCGCCCCTCTACTCTCATCGTCTCAAGC
TTTCACAACCATCTGTCCGTCTCGAGAACATGCCGCATCAATTGGCGTTA
AGCCAACACATCAAAGTGGTTCAGTTCGAACCGCTGTGCGCGCATCCATC
ATGCAAGATTTCCTAGCCGGACCATCCAGTCCACCCAGACCACGGCCTCT
ATACCAGGTCATCATGTTCACGATAAGCACAAATTTTCTCTGGTACGGCT
GGTACAAGTACTGTATAGAGCAAGAACTCCGTCGATTGACAGGCAAAGGG
CCCGGGGGCATAGGCGCCCTGCTACCTTTTATTGTGGGAGTAACATCACC
ACTCTATCTCCCAAACGGAGCCGCTTCACAGCTAGGCTTCGCTTCAGGGA
TATTGTGGATCGTAGCTGTGCAATATTATCTTTATCGACGAATCAATGTT
TTGATGACTGAAAACGGCTCCTCGCCTCCTCTTTCTCCCTGGTGGATTGT
TGTTCCTGGCTTTAATCTTGTCGTGGGCTTGCGAAGCGTGCACTTTCTCA
GTGTGGCTTTTGGCGCCGATGCTCATTCTGATCCGGTGGTTGACTTTTTC
CCATTTTTGGGCAAGGATACCTTGGGATTGTGGGAATTGCTGTCTACTCC
TTCTTTGTGGCTAAGCTTTGGAAAGCAACATGACAAGTGA
back to top

protein sequence of Gchil2187.t1

>Gchil2187.t1 ID=Gchil2187.t1|Name=Gchil2187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=230bp
MSSFLFVSAPLLSSSQAFTTICPSREHAASIGVKPTHQSGSVRTAVRASI
MQDFLAGPSSPPRPRPLYQVIMFTISTNFLWYGWYKYCIEQELRRLTGKG
PGGIGALLPFIVGVTSPLYLPNGAASQLGFASGILWIVAVQYYLYRRINV
LMTENGSSPPLSPWWIVVPGFNLVVGLRSVHFLSVAFGADAHSDPVVDFF
PFLGKDTLGLWELLSTPSLWLSFGKQHDK*
back to top

mRNA from alignment at tig00000228_pilon:215809..216498-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2187.t1 ID=Gchil2187.t1|Name=Gchil2187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=690bp|location=Sequence derived from alignment at tig00000228_pilon:215809..216498- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCCTTTCTCTTCGTTTCCGCCCCTCTACTCTCATCGTCTCAAGC
TTTCACAACCATCTGTCCGTCTCGAGAACATGCCGCATCAATTGGCGTTA
AGCCAACACATCAAAGTGGTTCAGTTCGAACCGCTGTGCGCGCATCCATC
ATGCAAGATTTCCTAGCCGGACCATCCAGTCCACCCAGACCACGGCCTCT
ATACCAGGTCATCATGTTCACGATAAGCACAAATTTTCTCTGGTACGGCT
GGTACAAGTACTGTATAGAGCAAGAACTCCGTCGATTGACAGGCAAAGGG
CCCGGGGGCATAGGCGCCCTGCTACCTTTTATTGTGGGAGTAACATCACC
ACTCTATCTCCCAAACGGAGCCGCTTCACAGCTAGGCTTCGCTTCAGGGA
TATTGTGGATCGTAGCTGTGCAATATTATCTTTATCGACGAATCAATGTT
TTGATGACTGAAAACGGCTCCTCGCCTCCTCTTTCTCCCTGGTGGATTGT
TGTTCCTGGCTTTAATCTTGTCGTGGGCTTGCGAAGCGTGCACTTTCTCA
GTGTGGCTTTTGGCGCCGATGCTCATTCTGATCCGGTGGTTGACTTTTTC
CCATTTTTGGGCAAGGATACCTTGGGATTGTGGGAATTGCTGTCTACTCC
TTCTTTGTGGCTAAGCTTTGGAAAGCAACATGACAAGTGA
back to top

Coding sequence (CDS) from alignment at tig00000228_pilon:215809..216498-

>Gchil2187.t1 ID=Gchil2187.t1|Name=Gchil2187.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=690bp|location=Sequence derived from alignment at tig00000228_pilon:215809..216498- (Gracilaria chilensis NLEC103_M9 male)
ATGTCTTCCTTTCTCTTCGTTTCCGCCCCTCTACTCTCATCGTCTCAAGC
TTTCACAACCATCTGTCCGTCTCGAGAACATGCCGCATCAATTGGCGTTA
AGCCAACACATCAAAGTGGTTCAGTTCGAACCGCTGTGCGCGCATCCATC
ATGCAAGATTTCCTAGCCGGACCATCCAGTCCACCCAGACCACGGCCTCT
ATACCAGGTCATCATGTTCACGATAAGCACAAATTTTCTCTGGTACGGCT
GGTACAAGTACTGTATAGAGCAAGAACTCCGTCGATTGACAGGCAAAGGG
CCCGGGGGCATAGGCGCCCTGCTACCTTTTATTGTGGGAGTAACATCACC
ACTCTATCTCCCAAACGGAGCCGCTTCACAGCTAGGCTTCGCTTCAGGGA
TATTGTGGATCGTAGCTGTGCAATATTATCTTTATCGACGAATCAATGTT
TTGATGACTGAAAACGGCTCCTCGCCTCCTCTTTCTCCCTGGTGGATTGT
TGTTCCTGGCTTTAATCTTGTCGTGGGCTTGCGAAGCGTGCACTTTCTCA
GTGTGGCTTTTGGCGCCGATGCTCATTCTGATCCGGTGGTTGACTTTTTC
CCATTTTTGGGCAAGGATACCTTGGGATTGTGGGAATTGCTGTCTACTCC
TTCTTTGTGGCTAAGCTTTGGAAAGCAACATGACAAGTGA
back to top