Gchil2184.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2184.t1
Unique Name	Gchil2184.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	486

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000228_pilon	contig	tig00000228_pilon:205984..207441 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	45157.CMM174CT
PFAMs	DUF647
Max annot lvl	2759\|Eukaryota
Evalue	5.56e-47
EggNOG OGs	KOG4249@1\|root,KOG4249@2759\|Eukaryota
Description	response to UV-B
COG category	S

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2184	Gchil2184	Gracilaria chilensis NLEC103_M9 male	gene	tig00000228_pilon 205984..207441 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2184.t1.start1	Gchil2184.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000228_pilon 205984..205986 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2184.t1.CDS1	Gchil2184.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000228_pilon 205984..207441 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2184.t1.exon1	Gchil2184.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000228_pilon 205984..207441 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2184.t1.stop1	Gchil2184.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000228_pilon 207439..207441 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2184.t1	Gchil2184.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000228_pilon 205984..207441 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000228_pilon:205984..207441+
coding sequence from alignment at tig00000228_pilon:205984..207441+

mRNA sequence

>Gchil2184.t1 ID=Gchil2184.t1|Name=Gchil2184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=486bp
MKCAFISLPLRLPFRFFKSHGTFSKRETRPGKVTSTTDPATSHAKPPSPS
KQIPPRLPILIERTKDSVYKLDLNTLVLQTVQDKHSSSRNSSHKPSSPIR
SLFYALLPTGYPDTVQPGYMYWAVWHIGRHVFRQSYYVLGTTSLLSSLGL
STNTSLAVGATLKWVLKDGLGMATKLFLSTSLARLVDADPKRFRMLGDTM
MACAALIEVLSVLNPPYFLAFGAIAGLLREAAGAMSGPAYRVFLDSFAGR
NNIGDVSSRGEAQVVIGNLLGLALGVFITQRLNSLQGGIRLAGTLVAFTP
LAALHLFCTRNAVGTVRLKTLNWQRVHLLLDVYLKHGSVPDVQSVNKSER
LLPIGNARTLRNRIICGASLREFEHVADQVAHTLKEMEDKHVIVVYNGVK
VGVILGDESKVGDIIFGLLWARKLLEIADAQKESRTYLPFVRQSLTWSKR
NCNRLLESLGEQGWSTEKLLIPLGASRYMVSNANE*

spliced messenger RNA

>Gchil2184.t1 ID=Gchil2184.t1|Name=Gchil2184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00000228_pilon:205984..207441+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGAAATGTGCGTTCATTTCCCTTCCACTGCGTCTTCCGTTTCGTTTCTT
CAAAAGTCATGGCACTTTTTCCAAGCGCGAAACACGCCCAGGCAAAGTCA
CCTCCACGACAGACCCCGCAACGTCACACGCAAAACCCCCTTCACCCTCA
AAGCAAATTCCGCCTCGTTTGCCAATCCTGATTGAGCGTACGAAAGATTC
GGTTTATAAGCTGGATCTCAACACATTAGTTCTTCAGACCGTACAAGATA
AACACTCCTCTAGTCGCAATTCTTCCCACAAACCCTCCAGTCCTATCCGC
TCGCTCTTTTATGCTTTGCTACCCACTGGTTATCCAGACACGGTGCAGCC
CGGTTACATGTACTGGGCAGTATGGCATATTGGTCGTCACGTCTTTAGAC
AGTCGTACTATGTTCTTGGCACCACCTCGCTCTTGTCAAGTCTAGGGCTC
TCGACTAATACCTCTTTAGCAGTTGGTGCCACTCTCAAGTGGGTGCTCAA
GGACGGCTTAGGAATGGCAACTAAACTATTTCTATCTACATCCCTGGCAA
GACTGGTAGACGCCGACCCGAAACGCTTTCGTATGCTGGGTGATACAATG
ATGGCATGTGCCGCTCTAATAGAAGTGCTATCAGTTTTGAATCCACCATA
CTTTCTCGCGTTCGGGGCCATCGCGGGCCTTCTACGAGAGGCTGCCGGTG
CAATGAGCGGCCCAGCCTATCGTGTTTTTCTCGATTCATTCGCTGGGAGA
AACAACATTGGCGATGTGTCAAGTAGAGGGGAGGCGCAGGTTGTCATCGG
CAACTTGCTTGGTCTTGCTCTAGGTGTATTCATCACGCAGAGACTGAACA
GTCTGCAAGGCGGAATACGCCTGGCTGGAACTCTGGTTGCCTTCACTCCT
CTCGCTGCTTTGCATCTATTCTGTACGAGGAATGCTGTGGGTACGGTGCG
ACTGAAAACACTTAATTGGCAGAGAGTTCATCTGCTTCTTGATGTTTATT
TGAAGCACGGGTCTGTCCCCGATGTGCAGAGCGTCAATAAGTCGGAACGA
TTGCTACCGATTGGAAATGCTCGAACATTACGCAATCGGATAATATGTGG
TGCTAGTCTTCGAGAGTTCGAACACGTCGCGGATCAAGTTGCTCATACGC
TGAAGGAAATGGAGGACAAACATGTTATTGTTGTGTACAACGGAGTTAAG
GTGGGTGTGATATTGGGCGATGAGTCAAAGGTAGGGGACATAATATTTGG
CCTATTGTGGGCAAGAAAACTTCTCGAAATCGCTGACGCACAAAAAGAAT
CGAGAACCTACCTGCCGTTTGTCCGCCAAAGTCTCACGTGGTCAAAACGA
AATTGCAATCGTCTGTTAGAGAGCTTAGGGGAGCAAGGTTGGTCCACGGA
AAAACTGCTGATTCCTCTTGGAGCATCCCGATATATGGTGAGCAATGCAA
ATGAGTGA

protein sequence of Gchil2184.t1

>Gchil2184.t1 ID=Gchil2184.t1|Name=Gchil2184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=486bp
MKCAFISLPLRLPFRFFKSHGTFSKRETRPGKVTSTTDPATSHAKPPSPS
KQIPPRLPILIERTKDSVYKLDLNTLVLQTVQDKHSSSRNSSHKPSSPIR
SLFYALLPTGYPDTVQPGYMYWAVWHIGRHVFRQSYYVLGTTSLLSSLGL
STNTSLAVGATLKWVLKDGLGMATKLFLSTSLARLVDADPKRFRMLGDTM
MACAALIEVLSVLNPPYFLAFGAIAGLLREAAGAMSGPAYRVFLDSFAGR
NNIGDVSSRGEAQVVIGNLLGLALGVFITQRLNSLQGGIRLAGTLVAFTP
LAALHLFCTRNAVGTVRLKTLNWQRVHLLLDVYLKHGSVPDVQSVNKSER
LLPIGNARTLRNRIICGASLREFEHVADQVAHTLKEMEDKHVIVVYNGVK
VGVILGDESKVGDIIFGLLWARKLLEIADAQKESRTYLPFVRQSLTWSKR
NCNRLLESLGEQGWSTEKLLIPLGASRYMVSNANE*

mRNA from alignment at tig00000228_pilon:205984..207441+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2184.t1 ID=Gchil2184.t1|Name=Gchil2184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1458bp|location=Sequence derived from alignment at tig00000228_pilon:205984..207441+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAATGTGCGTTCATTTCCCTTCCACTGCGTCTTCCGTTTCGTTTCTT
CAAAAGTCATGGCACTTTTTCCAAGCGCGAAACACGCCCAGGCAAAGTCA
CCTCCACGACAGACCCCGCAACGTCACACGCAAAACCCCCTTCACCCTCA
AAGCAAATTCCGCCTCGTTTGCCAATCCTGATTGAGCGTACGAAAGATTC
GGTTTATAAGCTGGATCTCAACACATTAGTTCTTCAGACCGTACAAGATA
AACACTCCTCTAGTCGCAATTCTTCCCACAAACCCTCCAGTCCTATCCGC
TCGCTCTTTTATGCTTTGCTACCCACTGGTTATCCAGACACGGTGCAGCC
CGGTTACATGTACTGGGCAGTATGGCATATTGGTCGTCACGTCTTTAGAC
AGTCGTACTATGTTCTTGGCACCACCTCGCTCTTGTCAAGTCTAGGGCTC
TCGACTAATACCTCTTTAGCAGTTGGTGCCACTCTCAAGTGGGTGCTCAA
GGACGGCTTAGGAATGGCAACTAAACTATTTCTATCTACATCCCTGGCAA
GACTGGTAGACGCCGACCCGAAACGCTTTCGTATGCTGGGTGATACAATG
ATGGCATGTGCCGCTCTAATAGAAGTGCTATCAGTTTTGAATCCACCATA
CTTTCTCGCGTTCGGGGCCATCGCGGGCCTTCTACGAGAGGCTGCCGGTG
CAATGAGCGGCCCAGCCTATCGTGTTTTTCTCGATTCATTCGCTGGGAGA
AACAACATTGGCGATGTGTCAAGTAGAGGGGAGGCGCAGGTTGTCATCGG
CAACTTGCTTGGTCTTGCTCTAGGTGTATTCATCACGCAGAGACTGAACA
GTCTGCAAGGCGGAATACGCCTGGCTGGAACTCTGGTTGCCTTCACTCCT
CTCGCTGCTTTGCATCTATTCTGTACGAGGAATGCTGTGGGTACGGTGCG
ACTGAAAACACTTAATTGGCAGAGAGTTCATCTGCTTCTTGATGTTTATT
TGAAGCACGGGTCTGTCCCCGATGTGCAGAGCGTCAATAAGTCGGAACGA
TTGCTACCGATTGGAAATGCTCGAACATTACGCAATCGGATAATATGTGG
TGCTAGTCTTCGAGAGTTCGAACACGTCGCGGATCAAGTTGCTCATACGC
TGAAGGAAATGGAGGACAAACATGTTATTGTTGTGTACAACGGAGTTAAG
GTGGGTGTGATATTGGGCGATGAGTCAAAGGTAGGGGACATAATATTTGG
CCTATTGTGGGCAAGAAAACTTCTCGAAATCGCTGACGCACAAAAAGAAT
CGAGAACCTACCTGCCGTTTGTCCGCCAAAGTCTCACGTGGTCAAAACGA
AATTGCAATCGTCTGTTAGAGAGCTTAGGGGAGCAAGGTTGGTCCACGGA
AAAACTGCTGATTCCTCTTGGAGCATCCCGATATATGGTGAGCAATGCAA
ATGAGTGA

Coding sequence (CDS) from alignment at tig00000228_pilon:205984..207441+

>Gchil2184.t1 ID=Gchil2184.t1|Name=Gchil2184.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1458bp|location=Sequence derived from alignment at tig00000228_pilon:205984..207441+ (Gracilaria chilensis NLEC103_M9 male)
ATGAAATGTGCGTTCATTTCCCTTCCACTGCGTCTTCCGTTTCGTTTCTT
CAAAAGTCATGGCACTTTTTCCAAGCGCGAAACACGCCCAGGCAAAGTCA
CCTCCACGACAGACCCCGCAACGTCACACGCAAAACCCCCTTCACCCTCA
AAGCAAATTCCGCCTCGTTTGCCAATCCTGATTGAGCGTACGAAAGATTC
GGTTTATAAGCTGGATCTCAACACATTAGTTCTTCAGACCGTACAAGATA
AACACTCCTCTAGTCGCAATTCTTCCCACAAACCCTCCAGTCCTATCCGC
TCGCTCTTTTATGCTTTGCTACCCACTGGTTATCCAGACACGGTGCAGCC
CGGTTACATGTACTGGGCAGTATGGCATATTGGTCGTCACGTCTTTAGAC
AGTCGTACTATGTTCTTGGCACCACCTCGCTCTTGTCAAGTCTAGGGCTC
TCGACTAATACCTCTTTAGCAGTTGGTGCCACTCTCAAGTGGGTGCTCAA
GGACGGCTTAGGAATGGCAACTAAACTATTTCTATCTACATCCCTGGCAA
GACTGGTAGACGCCGACCCGAAACGCTTTCGTATGCTGGGTGATACAATG
ATGGCATGTGCCGCTCTAATAGAAGTGCTATCAGTTTTGAATCCACCATA
CTTTCTCGCGTTCGGGGCCATCGCGGGCCTTCTACGAGAGGCTGCCGGTG
CAATGAGCGGCCCAGCCTATCGTGTTTTTCTCGATTCATTCGCTGGGAGA
AACAACATTGGCGATGTGTCAAGTAGAGGGGAGGCGCAGGTTGTCATCGG
CAACTTGCTTGGTCTTGCTCTAGGTGTATTCATCACGCAGAGACTGAACA
GTCTGCAAGGCGGAATACGCCTGGCTGGAACTCTGGTTGCCTTCACTCCT
CTCGCTGCTTTGCATCTATTCTGTACGAGGAATGCTGTGGGTACGGTGCG
ACTGAAAACACTTAATTGGCAGAGAGTTCATCTGCTTCTTGATGTTTATT
TGAAGCACGGGTCTGTCCCCGATGTGCAGAGCGTCAATAAGTCGGAACGA
TTGCTACCGATTGGAAATGCTCGAACATTACGCAATCGGATAATATGTGG
TGCTAGTCTTCGAGAGTTCGAACACGTCGCGGATCAAGTTGCTCATACGC
TGAAGGAAATGGAGGACAAACATGTTATTGTTGTGTACAACGGAGTTAAG
GTGGGTGTGATATTGGGCGATGAGTCAAAGGTAGGGGACATAATATTTGG
CCTATTGTGGGCAAGAAAACTTCTCGAAATCGCTGACGCACAAAAAGAAT
CGAGAACCTACCTGCCGTTTGTCCGCCAAAGTCTCACGTGGTCAAAACGA
AATTGCAATCGTCTGTTAGAGAGCTTAGGGGAGCAAGGTTGGTCCACGGA
AAAACTGCTGATTCCTCTTGGAGCATCCCGATATATGGTGAGCAATGCAA
ATGAGTGA