Gchil2177.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2177.t1
Unique Name	Gchil2177.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	646

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000228_pilon	contig	tig00000228_pilon:176932..178869 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	3694.POPTR_0001s07310.1
PFAMs	DnaJ,Myb_DNA-binding
Max annot lvl	35493\|Streptophyta
KEGG ko	ko:K09522
GOs	GO:0001558,GO:0003674,GO:0003682,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005829,GO:0006355,GO:0008150,GO:0009889,GO:0009891,GO:0009893,GO:0010468,GO:0010556,GO:0010557,GO:0010604,GO:0010628,GO:0019219,GO:0019222,GO:0030308,GO:0031323,GO:0031325,GO:0031326,GO:0031328,GO:0040008,GO:0042393,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0045893,GO:0045926,GO:0045935,GO:0048518,GO:0048519,GO:0048522,GO:0048523,GO:0050789,GO:0050794,GO:0051128,GO:0051171,GO:0051173,GO:0051252,GO:0051254,GO:0060255,GO:0061649,GO:0065007,GO:0080090,GO:0140030,GO:0140035,GO:0140036,GO:1902680,GO:1903506,GO:1903508,GO:2000112,GO:2001141
Evalue	7.67e-61
EggNOG OGs	KOG0724@1\|root,KOG0724@2759\|Eukaryota,37PCF@33090\|Viridiplantae,3GDXW@35493\|Streptophyta,4JDEA@91835\|fabids
Description	dnaJ homolog subfamily C member
COG category	K
BRITE	ko00000,ko03110

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2177	Gchil2177	Gracilaria chilensis NLEC103_M9 male	gene	tig00000228_pilon 176932..178869 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2177.t1.start1	Gchil2177.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000228_pilon 176932..176934 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2177.t1.CDS1	Gchil2177.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000228_pilon 176932..178869 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2177.t1.exon1	Gchil2177.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000228_pilon 176932..178869 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2177.t1.stop1	Gchil2177.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000228_pilon 178867..178869 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2177.t1	Gchil2177.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000228_pilon 176932..178869 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000228_pilon:176932..178869+
coding sequence from alignment at tig00000228_pilon:176932..178869+

mRNA sequence

>Gchil2177.t1 ID=Gchil2177.t1|Name=Gchil2177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=646bp
MARILSHLKKSPPLCLPPATGSLPEEGGLVVSPFATPISKNVEHAGHCYQ
RRLIKTYALNAPDAVDDVLSSSPGKKENVSGSDRSQRPDSSDAAKTLASK
MAIGSDDLYELLELGHKRWHATADDIKKSFRRISLIYHPDKISHQGEEAR
ANSETHFKAVKKAYEILSDKKKRAAYDSIDDVDDSIPTEKDATSSPACFY
EKFGNCFSINARWSVSNRVPELGDDNTDIEKVHKFYDFWYSFKSWRDFSF
DLEYDTDQAECREEKRWMERNNAKHIKSRKLEENVRIRKLVDLAFKNDPR
LKRIKEERKAKKNAQKAEKRKKAEEQARLAREKEHSERQEAERKAAAEKI
QRQAEKKEREAARQRLRKARQRLRAVSRAAGIMDMDRCLEAVERMCANGN
VESIDSVTQIVESVEEQGRDVQARALRILERALLTPQEPLSLSAIECNNG
LDSASDDVSVGESSVPKQNVNVNHKSSESTSAKIARTWTQDELSLLSKAV
AKYPGGTLERWSKIADFVGTRSADEVLRKVSANRPSKIRASTASGEGRVS
QQPSAFERFQEKKKGSPIAPQTKSPSPARTSQPPNKLNFTPKQQSMFETA
LKKHPGSDGEARWKKVSAAVDRTPEECKERFQELIAFYRPRKASA*

spliced messenger RNA

>Gchil2177.t1 ID=Gchil2177.t1|Name=Gchil2177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1938bp|location=Sequence derived from alignment at tig00000228_pilon:176932..178869+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGCCCGAATTCTCTCTCATTTGAAGAAATCCCCTCCTCTATGTTTGCC
TCCGGCCACCGGTAGTCTACCGGAAGAAGGTGGTCTCGTCGTTTCCCCGT
TTGCCACTCCTATTTCGAAGAATGTCGAACATGCTGGCCATTGCTATCAA
CGGAGACTCATCAAGACGTACGCCCTGAACGCACCTGATGCAGTCGATGA
CGTGCTATCCAGCTCTCCCGGCAAGAAAGAAAATGTCTCCGGTTCGGACA
GGTCACAGCGCCCGGACTCCTCGGACGCTGCGAAAACTCTTGCATCAAAA
ATGGCCATTGGTAGCGACGATCTTTATGAACTACTTGAATTGGGGCATAA
GAGATGGCACGCTACCGCAGATGATATTAAGAAGAGCTTCCGTCGAATCA
GTCTTATTTATCATCCCGATAAGATCTCACACCAGGGAGAGGAGGCACGA
GCCAACTCCGAAACTCATTTCAAGGCCGTGAAGAAAGCGTACGAGATTCT
CTCAGACAAAAAGAAGCGCGCAGCCTATGACTCAATTGATGACGTAGATG
ATTCAATTCCAACTGAGAAAGATGCCACGTCCTCCCCGGCCTGCTTTTAC
GAGAAGTTTGGGAACTGTTTTTCTATCAACGCCAGATGGTCCGTGTCTAA
TCGTGTGCCCGAACTGGGTGATGACAACACCGACATTGAGAAAGTTCACA
AGTTCTACGACTTTTGGTATTCATTCAAGTCATGGAGAGACTTTTCCTTT
GATCTCGAATATGACACAGATCAGGCAGAATGCCGGGAGGAAAAGAGATG
GATGGAGCGCAATAATGCGAAACACATCAAGTCCAGAAAGCTGGAGGAGA
ATGTTCGCATTCGTAAGCTGGTGGATCTTGCCTTCAAAAATGACCCCCGC
CTTAAGCGCATCAAAGAAGAGCGAAAAGCGAAAAAGAACGCACAGAAGGC
CGAAAAGCGGAAGAAGGCAGAGGAGCAGGCGCGACTAGCGAGAGAAAAAG
AACACAGCGAGCGGCAAGAGGCAGAAAGAAAGGCCGCCGCAGAAAAGATT
CAACGCCAGGCCGAGAAGAAGGAGAGAGAAGCTGCGAGACAAAGACTGCG
GAAAGCCCGACAACGATTGCGGGCAGTTTCTCGAGCAGCCGGAATAATGG
ACATGGATCGGTGCTTGGAGGCTGTGGAGAGAATGTGCGCAAATGGAAAT
GTGGAGAGCATCGACTCGGTCACTCAAATTGTGGAATCAGTCGAAGAGCA
AGGACGTGATGTGCAAGCGCGTGCACTCCGTATCCTAGAACGAGCTTTGC
TTACCCCTCAAGAGCCGCTGTCGTTGTCTGCAATCGAATGCAACAATGGT
CTTGACTCCGCCAGTGATGATGTTTCCGTAGGAGAGTCATCAGTTCCCAA
GCAAAATGTAAATGTGAATCACAAATCCAGTGAATCCACATCGGCGAAAA
TAGCTCGGACATGGACGCAGGACGAACTCTCACTGCTTTCCAAGGCTGTT
GCGAAGTATCCTGGAGGAACTCTGGAACGCTGGAGTAAAATAGCTGATTT
CGTTGGAACTCGATCAGCTGATGAAGTCTTGCGAAAAGTGAGTGCAAACC
GGCCATCCAAAATCCGGGCTTCCACTGCCTCTGGAGAAGGCAGGGTTTCA
CAGCAGCCATCTGCCTTTGAGCGTTTTCAAGAGAAGAAGAAGGGAAGTCC
CATAGCTCCCCAGACTAAATCGCCAAGTCCAGCCAGAACCTCTCAGCCGC
CAAACAAGTTGAATTTTACTCCAAAACAGCAATCCATGTTTGAAACAGCT
CTGAAAAAGCACCCAGGAAGCGATGGCGAAGCCAGATGGAAGAAAGTGTC
CGCAGCAGTAGATCGAACTCCTGAGGAATGCAAAGAACGTTTCCAAGAGC
TTATCGCATTTTACAGACCACGGAAAGCCTCGGCGTAG

protein sequence of Gchil2177.t1

>Gchil2177.t1 ID=Gchil2177.t1|Name=Gchil2177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=646bp
MARILSHLKKSPPLCLPPATGSLPEEGGLVVSPFATPISKNVEHAGHCYQ
RRLIKTYALNAPDAVDDVLSSSPGKKENVSGSDRSQRPDSSDAAKTLASK
MAIGSDDLYELLELGHKRWHATADDIKKSFRRISLIYHPDKISHQGEEAR
ANSETHFKAVKKAYEILSDKKKRAAYDSIDDVDDSIPTEKDATSSPACFY
EKFGNCFSINARWSVSNRVPELGDDNTDIEKVHKFYDFWYSFKSWRDFSF
DLEYDTDQAECREEKRWMERNNAKHIKSRKLEENVRIRKLVDLAFKNDPR
LKRIKEERKAKKNAQKAEKRKKAEEQARLAREKEHSERQEAERKAAAEKI
QRQAEKKEREAARQRLRKARQRLRAVSRAAGIMDMDRCLEAVERMCANGN
VESIDSVTQIVESVEEQGRDVQARALRILERALLTPQEPLSLSAIECNNG
LDSASDDVSVGESSVPKQNVNVNHKSSESTSAKIARTWTQDELSLLSKAV
AKYPGGTLERWSKIADFVGTRSADEVLRKVSANRPSKIRASTASGEGRVS
QQPSAFERFQEKKKGSPIAPQTKSPSPARTSQPPNKLNFTPKQQSMFETA
LKKHPGSDGEARWKKVSAAVDRTPEECKERFQELIAFYRPRKASA*

mRNA from alignment at tig00000228_pilon:176932..178869+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2177.t1 ID=Gchil2177.t1|Name=Gchil2177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1938bp|location=Sequence derived from alignment at tig00000228_pilon:176932..178869+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCGAATTCTCTCTCATTTGAAGAAATCCCCTCCTCTATGTTTGCC
TCCGGCCACCGGTAGTCTACCGGAAGAAGGTGGTCTCGTCGTTTCCCCGT
TTGCCACTCCTATTTCGAAGAATGTCGAACATGCTGGCCATTGCTATCAA
CGGAGACTCATCAAGACGTACGCCCTGAACGCACCTGATGCAGTCGATGA
CGTGCTATCCAGCTCTCCCGGCAAGAAAGAAAATGTCTCCGGTTCGGACA
GGTCACAGCGCCCGGACTCCTCGGACGCTGCGAAAACTCTTGCATCAAAA
ATGGCCATTGGTAGCGACGATCTTTATGAACTACTTGAATTGGGGCATAA
GAGATGGCACGCTACCGCAGATGATATTAAGAAGAGCTTCCGTCGAATCA
GTCTTATTTATCATCCCGATAAGATCTCACACCAGGGAGAGGAGGCACGA
GCCAACTCCGAAACTCATTTCAAGGCCGTGAAGAAAGCGTACGAGATTCT
CTCAGACAAAAAGAAGCGCGCAGCCTATGACTCAATTGATGACGTAGATG
ATTCAATTCCAACTGAGAAAGATGCCACGTCCTCCCCGGCCTGCTTTTAC
GAGAAGTTTGGGAACTGTTTTTCTATCAACGCCAGATGGTCCGTGTCTAA
TCGTGTGCCCGAACTGGGTGATGACAACACCGACATTGAGAAAGTTCACA
AGTTCTACGACTTTTGGTATTCATTCAAGTCATGGAGAGACTTTTCCTTT
GATCTCGAATATGACACAGATCAGGCAGAATGCCGGGAGGAAAAGAGATG
GATGGAGCGCAATAATGCGAAACACATCAAGTCCAGAAAGCTGGAGGAGA
ATGTTCGCATTCGTAAGCTGGTGGATCTTGCCTTCAAAAATGACCCCCGC
CTTAAGCGCATCAAAGAAGAGCGAAAAGCGAAAAAGAACGCACAGAAGGC
CGAAAAGCGGAAGAAGGCAGAGGAGCAGGCGCGACTAGCGAGAGAAAAAG
AACACAGCGAGCGGCAAGAGGCAGAAAGAAAGGCCGCCGCAGAAAAGATT
CAACGCCAGGCCGAGAAGAAGGAGAGAGAAGCTGCGAGACAAAGACTGCG
GAAAGCCCGACAACGATTGCGGGCAGTTTCTCGAGCAGCCGGAATAATGG
ACATGGATCGGTGCTTGGAGGCTGTGGAGAGAATGTGCGCAAATGGAAAT
GTGGAGAGCATCGACTCGGTCACTCAAATTGTGGAATCAGTCGAAGAGCA
AGGACGTGATGTGCAAGCGCGTGCACTCCGTATCCTAGAACGAGCTTTGC
TTACCCCTCAAGAGCCGCTGTCGTTGTCTGCAATCGAATGCAACAATGGT
CTTGACTCCGCCAGTGATGATGTTTCCGTAGGAGAGTCATCAGTTCCCAA
GCAAAATGTAAATGTGAATCACAAATCCAGTGAATCCACATCGGCGAAAA
TAGCTCGGACATGGACGCAGGACGAACTCTCACTGCTTTCCAAGGCTGTT
GCGAAGTATCCTGGAGGAACTCTGGAACGCTGGAGTAAAATAGCTGATTT
CGTTGGAACTCGATCAGCTGATGAAGTCTTGCGAAAAGTGAGTGCAAACC
GGCCATCCAAAATCCGGGCTTCCACTGCCTCTGGAGAAGGCAGGGTTTCA
CAGCAGCCATCTGCCTTTGAGCGTTTTCAAGAGAAGAAGAAGGGAAGTCC
CATAGCTCCCCAGACTAAATCGCCAAGTCCAGCCAGAACCTCTCAGCCGC
CAAACAAGTTGAATTTTACTCCAAAACAGCAATCCATGTTTGAAACAGCT
CTGAAAAAGCACCCAGGAAGCGATGGCGAAGCCAGATGGAAGAAAGTGTC
CGCAGCAGTAGATCGAACTCCTGAGGAATGCAAAGAACGTTTCCAAGAGC
TTATCGCATTTTACAGACCACGGAAAGCCTCGGCGTAG

Coding sequence (CDS) from alignment at tig00000228_pilon:176932..178869+

>Gchil2177.t1 ID=Gchil2177.t1|Name=Gchil2177.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1938bp|location=Sequence derived from alignment at tig00000228_pilon:176932..178869+ (Gracilaria chilensis NLEC103_M9 male)
ATGGCCCGAATTCTCTCTCATTTGAAGAAATCCCCTCCTCTATGTTTGCC
TCCGGCCACCGGTAGTCTACCGGAAGAAGGTGGTCTCGTCGTTTCCCCGT
TTGCCACTCCTATTTCGAAGAATGTCGAACATGCTGGCCATTGCTATCAA
CGGAGACTCATCAAGACGTACGCCCTGAACGCACCTGATGCAGTCGATGA
CGTGCTATCCAGCTCTCCCGGCAAGAAAGAAAATGTCTCCGGTTCGGACA
GGTCACAGCGCCCGGACTCCTCGGACGCTGCGAAAACTCTTGCATCAAAA
ATGGCCATTGGTAGCGACGATCTTTATGAACTACTTGAATTGGGGCATAA
GAGATGGCACGCTACCGCAGATGATATTAAGAAGAGCTTCCGTCGAATCA
GTCTTATTTATCATCCCGATAAGATCTCACACCAGGGAGAGGAGGCACGA
GCCAACTCCGAAACTCATTTCAAGGCCGTGAAGAAAGCGTACGAGATTCT
CTCAGACAAAAAGAAGCGCGCAGCCTATGACTCAATTGATGACGTAGATG
ATTCAATTCCAACTGAGAAAGATGCCACGTCCTCCCCGGCCTGCTTTTAC
GAGAAGTTTGGGAACTGTTTTTCTATCAACGCCAGATGGTCCGTGTCTAA
TCGTGTGCCCGAACTGGGTGATGACAACACCGACATTGAGAAAGTTCACA
AGTTCTACGACTTTTGGTATTCATTCAAGTCATGGAGAGACTTTTCCTTT
GATCTCGAATATGACACAGATCAGGCAGAATGCCGGGAGGAAAAGAGATG
GATGGAGCGCAATAATGCGAAACACATCAAGTCCAGAAAGCTGGAGGAGA
ATGTTCGCATTCGTAAGCTGGTGGATCTTGCCTTCAAAAATGACCCCCGC
CTTAAGCGCATCAAAGAAGAGCGAAAAGCGAAAAAGAACGCACAGAAGGC
CGAAAAGCGGAAGAAGGCAGAGGAGCAGGCGCGACTAGCGAGAGAAAAAG
AACACAGCGAGCGGCAAGAGGCAGAAAGAAAGGCCGCCGCAGAAAAGATT
CAACGCCAGGCCGAGAAGAAGGAGAGAGAAGCTGCGAGACAAAGACTGCG
GAAAGCCCGACAACGATTGCGGGCAGTTTCTCGAGCAGCCGGAATAATGG
ACATGGATCGGTGCTTGGAGGCTGTGGAGAGAATGTGCGCAAATGGAAAT
GTGGAGAGCATCGACTCGGTCACTCAAATTGTGGAATCAGTCGAAGAGCA
AGGACGTGATGTGCAAGCGCGTGCACTCCGTATCCTAGAACGAGCTTTGC
TTACCCCTCAAGAGCCGCTGTCGTTGTCTGCAATCGAATGCAACAATGGT
CTTGACTCCGCCAGTGATGATGTTTCCGTAGGAGAGTCATCAGTTCCCAA
GCAAAATGTAAATGTGAATCACAAATCCAGTGAATCCACATCGGCGAAAA
TAGCTCGGACATGGACGCAGGACGAACTCTCACTGCTTTCCAAGGCTGTT
GCGAAGTATCCTGGAGGAACTCTGGAACGCTGGAGTAAAATAGCTGATTT
CGTTGGAACTCGATCAGCTGATGAAGTCTTGCGAAAAGTGAGTGCAAACC
GGCCATCCAAAATCCGGGCTTCCACTGCCTCTGGAGAAGGCAGGGTTTCA
CAGCAGCCATCTGCCTTTGAGCGTTTTCAAGAGAAGAAGAAGGGAAGTCC
CATAGCTCCCCAGACTAAATCGCCAAGTCCAGCCAGAACCTCTCAGCCGC
CAAACAAGTTGAATTTTACTCCAAAACAGCAATCCATGTTTGAAACAGCT
CTGAAAAAGCACCCAGGAAGCGATGGCGAAGCCAGATGGAAGAAAGTGTC
CGCAGCAGTAGATCGAACTCCTGAGGAATGCAAAGAACGTTTCCAAGAGC
TTATCGCATTTTACAGACCACGGAAAGCCTCGGCGTAG