Gchil2176.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2176.t1
Unique NameGchil2176.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length323
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:174855..176098 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog248742.XP_005646348.1
PFAMsUPF0014
Max annot lvl3041|Chlorophyta
Evalue3.18e-46
EggNOG OGsCOG0390@1|root,2QR7N@2759|Eukaryota,37PG7@33090|Viridiplantae,34KU6@3041|Chlorophyta
DescriptionUncharacterised protein family (UPF0014)
COG categoryS
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2176Gchil2176Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 174855..176098 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2176.t1Gchil2176.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 174855..176098 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2176.t1.stop1Gchil2176.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 174855..174857 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2176.t1.CDS1Gchil2176.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 174855..175092 -
Gchil2176.t1.CDS2Gchil2176.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 175168..175220 -
Gchil2176.t1.CDS3Gchil2176.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 175335..175351 -
Gchil2176.t1.CDS4Gchil2176.t1.CDS4Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 175438..176098 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2176.t1.exon1Gchil2176.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 174855..175092 -
Gchil2176.t1.exon2Gchil2176.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 175168..175220 -
Gchil2176.t1.exon3Gchil2176.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 175335..175351 -
Gchil2176.t1.exon4Gchil2176.t1.exon4Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 175438..176098 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2176.t1.intron1Gchil2176.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 175093..175167 -
Gchil2176.t1.intron2Gchil2176.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 175221..175334 -
Gchil2176.t1.intron3Gchil2176.t1.intron3Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 175352..175437 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2176.t1.start1Gchil2176.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 176096..176098 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2176.t1 ID=Gchil2176.t1|Name=Gchil2176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=323bp
MPLLTQIISTAKDSSEPLTANGVVELTYLQLSFLLLSLAVVVFTSQRLSL
DIETQLGVGALRCFVQLSALGLVLVPIIKYNNPPLVLAYIVFMMFIAAIE
ASSRPPYIFDALFIVCFVCIATTVSLFALFTFSIIVPVGLDAQYVIPVVG
MIAGNSMSAVSVAVSAIVTNLAEHKHDVELLLAMGATRWEASMNVVKSGI
KLGLTPTLNTMSVAGLVAIPGMMTGQIIGGTPPSTAAKYQLVIIENRIRT
EKLSHRDSASRIGSMLSSGRYIARTFWNWRSQSLQMGSPFPSHVQESSPS
SYSEAPPKTEGDEANYGSIKTR*
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spliced messenger RNA

>Gchil2176.t1 ID=Gchil2176.t1|Name=Gchil2176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=969bp|location=Sequence derived from alignment at tig00000228_pilon:174855..176098- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCGCTGCTGACCCAAATCATTAGCACAGCCAAAGATTCTTCTGAACC
CTTGACTGCTAATGGCGTTGTGGAGTTGACATACCTTCAACTCTCATTCC
TGCTGCTTTCGCTTGCAGTTGTCGTCTTCACGAGCCAGCGTTTATCGCTG
GACATCGAAACACAGCTTGGAGTAGGAGCCCTTCGTTGCTTTGTGCAGCT
CAGTGCGCTAGGACTGGTTCTCGTCCCCATCATCAAGTACAACAATCCCC
CGTTGGTATTAGCATATATTGTGTTCATGATGTTTATCGCAGCCATCGAG
GCATCATCGAGGCCGCCTTACATTTTTGACGCTTTATTCATTGTGTGTTT
TGTATGCATTGCTACCACTGTTTCTTTGTTTGCCTTATTCACTTTCTCAA
TAATCGTCCCAGTTGGCTTAGACGCGCAGTACGTTATCCCAGTTGTGGGT
ATGATAGCCGGAAACTCTATGAGTGCGGTGAGTGTGGCCGTCTCTGCTAT
TGTTACCAATCTAGCTGAACACAAACATGACGTTGAACTTCTTCTGGCCA
TGGGAGCAACCCGCTGGGAAGCGTCCATGAACGTCGTCAAGTCTGGCATC
AAACTTGGACTGACCCCAACGCTCAACACAATGAGTGTTGCAGGTTTGGT
CGCCATTCCAGGCATGATGACGGGGCAAATTATCGGGGGTACTCCGCCAA
GCACTGCTGCCAAGTACCAGCTCGTCATCATCGAAAACCGAATTCGGACA
GAAAAACTCTCTCATCGAGATTCGGCTAGTCGCATCGGATCGATGTTGTC
ATCGGGTCGATATATTGCAAGAACGTTTTGGAACTGGCGTTCTCAATCTT
TACAAATGGGGTCCCCTTTTCCATCACATGTACAAGAGTCATCACCATCG
TCCTATTCTGAAGCCCCTCCGAAAACTGAGGGAGACGAGGCGAATTACGG
CTCGATTAAAACTCGGTGA
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protein sequence of Gchil2176.t1

>Gchil2176.t1 ID=Gchil2176.t1|Name=Gchil2176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=323bp
MPLLTQIISTAKDSSEPLTANGVVELTYLQLSFLLLSLAVVVFTSQRLSL
DIETQLGVGALRCFVQLSALGLVLVPIIKYNNPPLVLAYIVFMMFIAAIE
ASSRPPYIFDALFIVCFVCIATTVSLFALFTFSIIVPVGLDAQYVIPVVG
MIAGNSMSAVSVAVSAIVTNLAEHKHDVELLLAMGATRWEASMNVVKSGI
KLGLTPTLNTMSVAGLVAIPGMMTGQIIGGTPPSTAAKYQLVIIENRIRT
EKLSHRDSASRIGSMLSSGRYIARTFWNWRSQSLQMGSPFPSHVQESSPS
SYSEAPPKTEGDEANYGSIKTR*
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mRNA from alignment at tig00000228_pilon:174855..176098-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2176.t1 ID=Gchil2176.t1|Name=Gchil2176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1244bp|location=Sequence derived from alignment at tig00000228_pilon:174855..176098- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCTGCTGACCCAAATCATTAGCACAGCCAAAGATTCTTCTGAACC
CTTGACTGCTAATGGCGTTGTGGAGTTGACATACCTTCAACTCTCATTCC
TGCTGCTTTCGCTTGCAGTTGTCGTCTTCACGAGCCAGCGTTTATCGCTG
GACATCGAAACACAGCTTGGAGTAGGAGCCCTTCGTTGCTTTGTGCAGCT
CAGTGCGCTAGGACTGGTTCTCGTCCCCATCATCAAGTACAACAATCCCC
CGTTGGTATTAGCATATATTGTGTTCATGATGTTTATCGCAGCCATCGAG
GCATCATCGAGGCCGCCTTACATTTTTGACGCTTTATTCATTGTGTGTTT
TGTATGCATTGCTACCACTGTTTCTTTGTTTGCCTTATTCACTTTCTCAA
TAATCGTCCCAGTTGGCTTAGACGCGCAGTACGTTATCCCAGTTGTGGGT
ATGATAGCCGGAAACTCTATGAGTGCGGTGAGTGTGGCCGTCTCTGCTAT
TGTTACCAATCTAGCTGAACACAAACATGACGTTGAACTTCTTCTGGCCA
TGGGAGCAACCCGCTGGGAAGCGTCCATGAACGTCGTCAAGTCTGGCATC
AAACTTGGACTGACCCCAACGCTCAACACAATGAGTGTTGCAGGTTTGGT
CGCCATTCCAGGTGCGTCACACTCGAGAAATTCTCTGCGACGCCCGCACA
TTCACTAATGGTTTTTGTAATGCTGATTTTCATATCATATTAATCAGGCA
TGATGACGGGGCAAGTATGTAGGCACAAAAACCTTCTTCACGGCGCAACG
CACACGGTGCTTGAATATACAACACATCTGACCGTGTCACGCTCTTATAT
CTTCTGTGCTTTGACGTCGATTGTGTAGATTATCGGGGGTACTCCGCCAA
GCACTGCTGCCAAGTACCAGCTCGTCATCATGTACGTAGCGGCTGGAACA
GCAACTGTCTCAACTCTAACAGCCTCTTTTCTCACGATCAGTGTTCTAAT
TGACAGCGAAAACCGAATTCGGACAGAAAAACTCTCTCATCGAGATTCGG
CTAGTCGCATCGGATCGATGTTGTCATCGGGTCGATATATTGCAAGAACG
TTTTGGAACTGGCGTTCTCAATCTTTACAAATGGGGTCCCCTTTTCCATC
ACATGTACAAGAGTCATCACCATCGTCCTATTCTGAAGCCCCTCCGAAAA
CTGAGGGAGACGAGGCGAATTACGGCTCGATTAAAACTCGGTGA
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Coding sequence (CDS) from alignment at tig00000228_pilon:174855..176098-

>Gchil2176.t1 ID=Gchil2176.t1|Name=Gchil2176.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=969bp|location=Sequence derived from alignment at tig00000228_pilon:174855..176098- (Gracilaria chilensis NLEC103_M9 male)
ATGCCGCTGCTGACCCAAATCATTAGCACAGCCAAAGATTCTTCTGAACC
CTTGACTGCTAATGGCGTTGTGGAGTTGACATACCTTCAACTCTCATTCC
TGCTGCTTTCGCTTGCAGTTGTCGTCTTCACGAGCCAGCGTTTATCGCTG
GACATCGAAACACAGCTTGGAGTAGGAGCCCTTCGTTGCTTTGTGCAGCT
CAGTGCGCTAGGACTGGTTCTCGTCCCCATCATCAAGTACAACAATCCCC
CGTTGGTATTAGCATATATTGTGTTCATGATGTTTATCGCAGCCATCGAG
GCATCATCGAGGCCGCCTTACATTTTTGACGCTTTATTCATTGTGTGTTT
TGTATGCATTGCTACCACTGTTTCTTTGTTTGCCTTATTCACTTTCTCAA
TAATCGTCCCAGTTGGCTTAGACGCGCAGTACGTTATCCCAGTTGTGGGT
ATGATAGCCGGAAACTCTATGAGTGCGGTGAGTGTGGCCGTCTCTGCTAT
TGTTACCAATCTAGCTGAACACAAACATGACGTTGAACTTCTTCTGGCCA
TGGGAGCAACCCGCTGGGAAGCGTCCATGAACGTCGTCAAGTCTGGCATC
AAACTTGGACTGACCCCAACGCTCAACACAATGAGTGTTGCAGGTTTGGT
CGCCATTCCAGGCATGATGACGGGGCAAATTATCGGGGGTACTCCGCCAA
GCACTGCTGCCAAGTACCAGCTCGTCATCATCGAAAACCGAATTCGGACA
GAAAAACTCTCTCATCGAGATTCGGCTAGTCGCATCGGATCGATGTTGTC
ATCGGGTCGATATATTGCAAGAACGTTTTGGAACTGGCGTTCTCAATCTT
TACAAATGGGGTCCCCTTTTCCATCACATGTACAAGAGTCATCACCATCG
TCCTATTCTGAAGCCCCTCCGAAAACTGAGGGAGACGAGGCGAATTACGG
CTCGATTAAAACTCGGTGA
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