Gchil2175.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2175.t1
Unique Name	Gchil2175.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	387

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000228_pilon	contig	tig00000228_pilon:173492..174652 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	55529.EKX54658
PFAMs	Mg_trans_NIPA
Max annot lvl	2759\|Eukaryota
Evalue	2.61e-47
EggNOG OGs	KOG2922@1\|root,KOG2922@2759\|Eukaryota
Description	magnesium ion transmembrane transporter activity
COG category	U

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2175	Gchil2175	Gracilaria chilensis NLEC103_M9 male	gene	tig00000228_pilon 173492..174652 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2175.t1.start1	Gchil2175.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000228_pilon 173492..173494 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2175.t1.CDS1	Gchil2175.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000228_pilon 173492..174652 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2175.t1.exon1	Gchil2175.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000228_pilon 173492..174652 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2175.t1.stop1	Gchil2175.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000228_pilon 174650..174652 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2175.t1	Gchil2175.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000228_pilon 173492..174652 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000228_pilon:173492..174652+
coding sequence from alignment at tig00000228_pilon:173492..174652+

mRNA sequence

>Gchil2175.t1 ID=Gchil2175.t1|Name=Gchil2175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=387bp
MSDSAAGQVSVGTAKMIGFLLAICGNTLIACSLTLQKKAHNAVEPDSDSD
LRPEAEQEPETPESEQLARHDADVEQQGLESSSRLSDAGSTSELHILRNP
TWWLGTFLMAAGEVGNFAAFAFAPASLVAPLGAWSVVLSAILAHIFLQEH
VSNANLLGIALCVTGAFLIGAAGPDVSAAEASLDAGAVTRLLLRTPFVVF
ILLTLTATAVLIYISHHTTLGQRHIYVYVGVSSLLGGVTVVCAKALSTFL
RLTIEGNSQFGNFLPFLLVIILALAILAQLRYLNMAMAQFGNAQVIPVYY
VLFTTCAMTSGVIMYREFDALTSRNIPFFLGICSTMSGVFLVSRSVKASN
AKLNADSAKDGSGRQYASVPISPISSPRGSGQPVWP*

spliced messenger RNA

>Gchil2175.t1 ID=Gchil2175.t1|Name=Gchil2175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00000228_pilon:173492..174652+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTCCGACTCGGCGGCTGGTCAGGTGTCCGTCGGAACCGCAAAGATGAT
CGGCTTCTTGTTGGCCATCTGCGGTAACACGCTCATAGCCTGTTCGCTAA
CCTTGCAAAAAAAGGCCCACAATGCCGTTGAACCCGACTCCGACTCCGAC
CTCCGACCCGAAGCTGAGCAAGAGCCCGAAACCCCAGAGTCCGAGCAGCT
TGCGCGCCACGATGCCGATGTCGAACAGCAGGGCCTTGAGTCTTCGTCTC
GGCTCTCGGACGCCGGCAGCACATCCGAGCTACACATCTTGCGCAACCCT
ACATGGTGGCTCGGAACCTTTCTCATGGCTGCCGGCGAAGTTGGAAATTT
TGCCGCCTTTGCATTCGCCCCAGCTTCTCTTGTCGCTCCGCTCGGCGCCT
GGAGCGTCGTCCTCTCTGCCATTCTTGCACACATTTTCCTCCAGGAGCAC
GTGTCAAATGCCAACTTGCTTGGTATAGCTCTCTGCGTTACCGGTGCGTT
TCTTATTGGCGCCGCTGGCCCAGATGTGTCGGCCGCAGAGGCCTCGCTTG
ATGCCGGTGCGGTAACCAGATTACTTTTGCGGACTCCCTTCGTCGTCTTT
ATTCTGCTCACGCTTACCGCCACCGCAGTCTTAATTTATATATCGCATCA
CACAACGCTTGGTCAAAGGCATATCTACGTTTACGTTGGTGTCAGTTCTC
TCTTGGGAGGTGTCACTGTGGTCTGCGCAAAGGCATTGAGTACTTTTCTG
CGCCTCACAATCGAAGGAAACTCTCAGTTTGGCAACTTCCTTCCCTTTCT
GCTTGTTATTATTCTCGCCTTGGCCATTTTAGCCCAACTTCGTTATCTCA
ATATGGCTATGGCTCAGTTTGGAAATGCTCAAGTAATTCCTGTTTACTAT
GTTCTATTCACGACATGTGCGATGACATCAGGCGTCATTATGTACAGAGA
GTTCGACGCCCTCACTTCGCGTAATATTCCCTTTTTCTTAGGAATTTGTT
CGACGATGAGTGGTGTCTTTTTGGTTAGCAGGAGCGTGAAGGCTTCAAAC
GCAAAGCTAAATGCTGACTCTGCAAAAGACGGTTCAGGAAGGCAATACGC
TTCGGTTCCGATTTCACCCATCTCATCTCCAAGAGGGAGTGGTCAACCGG
TGTGGCCGTAA

protein sequence of Gchil2175.t1

>Gchil2175.t1 ID=Gchil2175.t1|Name=Gchil2175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=387bp
MSDSAAGQVSVGTAKMIGFLLAICGNTLIACSLTLQKKAHNAVEPDSDSD
LRPEAEQEPETPESEQLARHDADVEQQGLESSSRLSDAGSTSELHILRNP
TWWLGTFLMAAGEVGNFAAFAFAPASLVAPLGAWSVVLSAILAHIFLQEH
VSNANLLGIALCVTGAFLIGAAGPDVSAAEASLDAGAVTRLLLRTPFVVF
ILLTLTATAVLIYISHHTTLGQRHIYVYVGVSSLLGGVTVVCAKALSTFL
RLTIEGNSQFGNFLPFLLVIILALAILAQLRYLNMAMAQFGNAQVIPVYY
VLFTTCAMTSGVIMYREFDALTSRNIPFFLGICSTMSGVFLVSRSVKASN
AKLNADSAKDGSGRQYASVPISPISSPRGSGQPVWP*

mRNA from alignment at tig00000228_pilon:173492..174652+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2175.t1 ID=Gchil2175.t1|Name=Gchil2175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1161bp|location=Sequence derived from alignment at tig00000228_pilon:173492..174652+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGACTCGGCGGCTGGTCAGGTGTCCGTCGGAACCGCAAAGATGAT
CGGCTTCTTGTTGGCCATCTGCGGTAACACGCTCATAGCCTGTTCGCTAA
CCTTGCAAAAAAAGGCCCACAATGCCGTTGAACCCGACTCCGACTCCGAC
CTCCGACCCGAAGCTGAGCAAGAGCCCGAAACCCCAGAGTCCGAGCAGCT
TGCGCGCCACGATGCCGATGTCGAACAGCAGGGCCTTGAGTCTTCGTCTC
GGCTCTCGGACGCCGGCAGCACATCCGAGCTACACATCTTGCGCAACCCT
ACATGGTGGCTCGGAACCTTTCTCATGGCTGCCGGCGAAGTTGGAAATTT
TGCCGCCTTTGCATTCGCCCCAGCTTCTCTTGTCGCTCCGCTCGGCGCCT
GGAGCGTCGTCCTCTCTGCCATTCTTGCACACATTTTCCTCCAGGAGCAC
GTGTCAAATGCCAACTTGCTTGGTATAGCTCTCTGCGTTACCGGTGCGTT
TCTTATTGGCGCCGCTGGCCCAGATGTGTCGGCCGCAGAGGCCTCGCTTG
ATGCCGGTGCGGTAACCAGATTACTTTTGCGGACTCCCTTCGTCGTCTTT
ATTCTGCTCACGCTTACCGCCACCGCAGTCTTAATTTATATATCGCATCA
CACAACGCTTGGTCAAAGGCATATCTACGTTTACGTTGGTGTCAGTTCTC
TCTTGGGAGGTGTCACTGTGGTCTGCGCAAAGGCATTGAGTACTTTTCTG
CGCCTCACAATCGAAGGAAACTCTCAGTTTGGCAACTTCCTTCCCTTTCT
GCTTGTTATTATTCTCGCCTTGGCCATTTTAGCCCAACTTCGTTATCTCA
ATATGGCTATGGCTCAGTTTGGAAATGCTCAAGTAATTCCTGTTTACTAT
GTTCTATTCACGACATGTGCGATGACATCAGGCGTCATTATGTACAGAGA
GTTCGACGCCCTCACTTCGCGTAATATTCCCTTTTTCTTAGGAATTTGTT
CGACGATGAGTGGTGTCTTTTTGGTTAGCAGGAGCGTGAAGGCTTCAAAC
GCAAAGCTAAATGCTGACTCTGCAAAAGACGGTTCAGGAAGGCAATACGC
TTCGGTTCCGATTTCACCCATCTCATCTCCAAGAGGGAGTGGTCAACCGG
TGTGGCCGTAA

Coding sequence (CDS) from alignment at tig00000228_pilon:173492..174652+

>Gchil2175.t1 ID=Gchil2175.t1|Name=Gchil2175.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1161bp|location=Sequence derived from alignment at tig00000228_pilon:173492..174652+ (Gracilaria chilensis NLEC103_M9 male)
ATGTCCGACTCGGCGGCTGGTCAGGTGTCCGTCGGAACCGCAAAGATGAT
CGGCTTCTTGTTGGCCATCTGCGGTAACACGCTCATAGCCTGTTCGCTAA
CCTTGCAAAAAAAGGCCCACAATGCCGTTGAACCCGACTCCGACTCCGAC
CTCCGACCCGAAGCTGAGCAAGAGCCCGAAACCCCAGAGTCCGAGCAGCT
TGCGCGCCACGATGCCGATGTCGAACAGCAGGGCCTTGAGTCTTCGTCTC
GGCTCTCGGACGCCGGCAGCACATCCGAGCTACACATCTTGCGCAACCCT
ACATGGTGGCTCGGAACCTTTCTCATGGCTGCCGGCGAAGTTGGAAATTT
TGCCGCCTTTGCATTCGCCCCAGCTTCTCTTGTCGCTCCGCTCGGCGCCT
GGAGCGTCGTCCTCTCTGCCATTCTTGCACACATTTTCCTCCAGGAGCAC
GTGTCAAATGCCAACTTGCTTGGTATAGCTCTCTGCGTTACCGGTGCGTT
TCTTATTGGCGCCGCTGGCCCAGATGTGTCGGCCGCAGAGGCCTCGCTTG
ATGCCGGTGCGGTAACCAGATTACTTTTGCGGACTCCCTTCGTCGTCTTT
ATTCTGCTCACGCTTACCGCCACCGCAGTCTTAATTTATATATCGCATCA
CACAACGCTTGGTCAAAGGCATATCTACGTTTACGTTGGTGTCAGTTCTC
TCTTGGGAGGTGTCACTGTGGTCTGCGCAAAGGCATTGAGTACTTTTCTG
CGCCTCACAATCGAAGGAAACTCTCAGTTTGGCAACTTCCTTCCCTTTCT
GCTTGTTATTATTCTCGCCTTGGCCATTTTAGCCCAACTTCGTTATCTCA
ATATGGCTATGGCTCAGTTTGGAAATGCTCAAGTAATTCCTGTTTACTAT
GTTCTATTCACGACATGTGCGATGACATCAGGCGTCATTATGTACAGAGA
GTTCGACGCCCTCACTTCGCGTAATATTCCCTTTTTCTTAGGAATTTGTT
CGACGATGAGTGGTGTCTTTTTGGTTAGCAGGAGCGTGAAGGCTTCAAAC
GCAAAGCTAAATGCTGACTCTGCAAAAGACGGTTCAGGAAGGCAATACGC
TTCGGTTCCGATTTCACCCATCTCATCTCCAAGAGGGAGTGGTCAACCGG
TGTGGCCGTAA