Gchil2172.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2172.t1
Unique NameGchil2172.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length130
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:165675..166150 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog8090.ENSORLP00000023900
Preferred namePFDN4
PFAMsPrefoldin_2
Max annot lvl33208|Metazoa
KEGG koko:K09550
GOsGO:0003674,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005634,GO:0005737,GO:0005739,GO:0005829,GO:0006457,GO:0008150,GO:0009987,GO:0016272,GO:0032991,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0044424,GO:0044444,GO:0044464,GO:0051087
Evalue6.61e-18
EggNOG OGsCOG1382@1|root,KOG1760@2759|Eukaryota,3A07R@33154|Opisthokonta,3BPKT@33208|Metazoa,3D6NQ@33213|Bilateria,48DX9@7711|Chordata,49ASK@7742|Vertebrata,4A3R8@7898|Actinopterygii
DescriptionBinds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins
COG categoryO
BRITEko00000,ko03110
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2172Gchil2172Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 165675..166150 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2172.t1Gchil2172.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 165675..166150 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2172.t1.stop1Gchil2172.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 165675..165677 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2172.t1.CDS1Gchil2172.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 165675..165695 -
Gchil2172.t1.CDS2Gchil2172.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 165782..166150 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2172.t1.exon1Gchil2172.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 165675..165695 -
Gchil2172.t1.exon2Gchil2172.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 165782..166150 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2172.t1.intron1Gchil2172.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 165696..165781 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2172.t1.start1Gchil2172.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 166148..166150 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2172.t1 ID=Gchil2172.t1|Name=Gchil2172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=130bp
MELNPEDERPHIAMSPADKDKINAFSRHLARKNDLKRRIARRKKLIQLHD
DASDELLLLDDDAPVHYNIGDVFILDEKDAVDQSLQNTISQLNEDVEQYH
QQVSEIEQSMTELKAALYAKFGKTINLEE*
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spliced messenger RNA

>Gchil2172.t1 ID=Gchil2172.t1|Name=Gchil2172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=390bp|location=Sequence derived from alignment at tig00000228_pilon:165675..166150- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAGCTTAATCCCGAGGATGAGCGCCCACACATCGCCATGTCTCCAGC
GGACAAGGATAAGATAAACGCCTTTTCTCGTCATCTGGCTCGCAAGAATG
ATCTCAAACGGCGCATCGCACGGCGCAAAAAGTTGATCCAACTGCATGAC
GACGCCTCTGATGAGCTGCTTCTTCTTGACGATGATGCCCCTGTGCACTA
CAACATTGGAGACGTTTTCATTCTTGATGAAAAGGATGCAGTCGATCAAT
CATTGCAAAACACAATCTCCCAACTCAATGAAGACGTAGAGCAGTACCAT
CAACAAGTTTCTGAAATTGAGCAGTCTATGACGGAACTGAAGGCTGCACT
TTACGCCAAGTTTGGAAAGACTATTAACCTTGAAGAATAG
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protein sequence of Gchil2172.t1

>Gchil2172.t1 ID=Gchil2172.t1|Name=Gchil2172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=130bp
MELNPEDERPHIAMSPADKDKINAFSRHLARKNDLKRRIARRKKLIQLHD
DASDELLLLDDDAPVHYNIGDVFILDEKDAVDQSLQNTISQLNEDVEQYH
QQVSEIEQSMTELKAALYAKFGKTINLEE*
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mRNA from alignment at tig00000228_pilon:165675..166150-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2172.t1 ID=Gchil2172.t1|Name=Gchil2172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=476bp|location=Sequence derived from alignment at tig00000228_pilon:165675..166150- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCTTAATCCCGAGGATGAGCGCCCACACATCGCCATGTCTCCAGC
GGACAAGGATAAGATAAACGCCTTTTCTCGTCATCTGGCTCGCAAGAATG
ATCTCAAACGGCGCATCGCACGGCGCAAAAAGTTGATCCAACTGCATGAC
GACGCCTCTGATGAGCTGCTTCTTCTTGACGATGATGCCCCTGTGCACTA
CAACATTGGAGACGTTTTCATTCTTGATGAAAAGGATGCAGTCGATCAAT
CATTGCAAAACACAATCTCCCAACTCAATGAAGACGTAGAGCAGTACCAT
CAACAAGTTTCTGAAATTGAGCAGTCTATGACGGAACTGAAGGCTGCACT
TTACGCCAAGTTTGGAAAGGTCCGTCTCTTAATTTTTCTCACATTGTGCT
GCCTTTATGCGTAGACATGCGCTAACCACGTTCTCTCACTTTTCTACTGC
CACAGACTATTAACCTTGAAGAATAG
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Coding sequence (CDS) from alignment at tig00000228_pilon:165675..166150-

>Gchil2172.t1 ID=Gchil2172.t1|Name=Gchil2172.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=390bp|location=Sequence derived from alignment at tig00000228_pilon:165675..166150- (Gracilaria chilensis NLEC103_M9 male)
ATGGAGCTTAATCCCGAGGATGAGCGCCCACACATCGCCATGTCTCCAGC
GGACAAGGATAAGATAAACGCCTTTTCTCGTCATCTGGCTCGCAAGAATG
ATCTCAAACGGCGCATCGCACGGCGCAAAAAGTTGATCCAACTGCATGAC
GACGCCTCTGATGAGCTGCTTCTTCTTGACGATGATGCCCCTGTGCACTA
CAACATTGGAGACGTTTTCATTCTTGATGAAAAGGATGCAGTCGATCAAT
CATTGCAAAACACAATCTCCCAACTCAATGAAGACGTAGAGCAGTACCAT
CAACAAGTTTCTGAAATTGAGCAGTCTATGACGGAACTGAAGGCTGCACT
TTACGCCAAGTTTGGAAAGACTATTAACCTTGAAGAATAG
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