Gchil2166.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2166.t1
Unique NameGchil2166.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length373
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:106451..107773 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2166Gchil2166Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 106451..107773 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2166.t1Gchil2166.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 106451..107773 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2166.t1.stop1Gchil2166.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 106451..106453 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2166.t1.CDS1Gchil2166.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 106451..106636 -
Gchil2166.t1.CDS2Gchil2166.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 106762..107187 -
Gchil2166.t1.CDS3Gchil2166.t1.CDS3Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 107267..107773 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2166.t1.exon1Gchil2166.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 106451..106636 -
Gchil2166.t1.exon2Gchil2166.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 106762..107187 -
Gchil2166.t1.exon3Gchil2166.t1.exon3Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 107267..107773 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2166.t1.intron1Gchil2166.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 106637..106761 -
Gchil2166.t1.intron2Gchil2166.t1.intron2Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 107188..107266 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2166.t1.start1Gchil2166.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 107771..107773 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2166.t1 ID=Gchil2166.t1|Name=Gchil2166.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=373bp
MPGRNLYIVPTSSSFVLEDGSSPLHLGLDIKRYANTIHLSSPSHIELRRP
GDTKPRRFLTYLSQDKNDARLRLEIAPLAHSTAKSLLATFHGKADLLIAK
KGHGLTHAHADAEHRGHGEAAHELVVVEQHRPQGLPGLRDHVLAQVQEQV
HEDHEGHLLERQDLDRHLEGGDRELVHVVHQVAEHGLLPHRLRADVEPHV
VLLDLAEDHGEKLDERDDLLEEPLGRANLPGDGGAERAEELGDHVLERYR
EGQQVGQVRERVPRELLLDEVHRQVPVAQRRHDHGGDAAGRVHEVNLHEL
NLGELREEHLVNTFTMYIAWKYAINYCSTLGSTWMRHIEPATGCITRIRI
GITVLNFKKKLRRSQKNAFTTG*
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spliced messenger RNA

>Gchil2166.t1 ID=Gchil2166.t1|Name=Gchil2166.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1119bp|location=Sequence derived from alignment at tig00000228_pilon:106451..107773- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGCCTGGGCGTAATCTCTACATTGTACCGACTTCATCTTCATTCGTACT
CGAGGATGGGTCGTCGCCGCTGCATTTGGGACTCGATATCAAGCGATACG
CCAACACCATCCACCTTAGTTCCCCTTCGCACATCGAACTAAGGCGACCC
GGAGATACCAAACCACGTAGATTCTTGACGTATTTGTCCCAGGATAAGAA
CGATGCACGCCTGCGACTCGAAATCGCCCCGCTTGCTCACTCTACTGCTA
AGAGTCTCTTAGCAACATTTCACGGAAAAGCGGATTTGTTGATTGCGAAA
AAGGGACATGGACTTACCCATGCACACGCGGATGCAGAGCATCGTGGACA
TGGCGAAGCAGCCCATGAACTTGTCGTTGTTGAACAGCATCGACCCCAAG
GACTACCTGGGCTTCGGGACCATGTCCTCGCACAAGTACAGGAGCAAGTT
CATGAGGATCATGAAGGACATCTCCTCGAACGCCAGGACCTGGATCGTCA
TCTGGAGGGAGGCGATCGCGAACTTGTTCATGTAGTACACCAGGTAGCAG
AGCACGGACTCCTTCCCCATCGTCTGCGTGCCGACGTCGAACCCCACGTT
GTGCTCCTTGATCTGGCTGAAGATCACGGAGAAAAACTCGACGAACGCGA
CGACCTTCTTGAGGAACCCCTTGGCCGCGCAAATCTCCCTGGCGACGGCG
GCGCAGAACGAGCAGAAGAACTGGGAGATCATGTTCTGGAACGATATCGC
GAGGGCCAGCAAGTCGGGCAAGTACGAGAGCGGGTTCCACGAGAGCTACT
ACTTGACGAAGTCCACCGACAAGTACCCGTTGCTCAACGCCGACATGACC
ACGGTGGCGATGCCGCCGGCCGGGTACACGAGGTCAATCTTCACGAACTG
AATCTCGGCGAACTCAGAGAAGAACATCTAGTGAATACTTTTACTATGTA
TATCGCATGGAAGTATGCAATAAATTACTGTAGTACTCTCGGGTCCACTT
GGATGCGACATATCGAACCCGCAACAGGTTGTATTACCAGAATCCGAATT
GGGATCACCGTCTTGAACTTCAAGAAGAAACTGAGAAGAAGTCAGAAGAA
CGCTTTCACGACAGGTTGA
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protein sequence of Gchil2166.t1

>Gchil2166.t1 ID=Gchil2166.t1|Name=Gchil2166.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=373bp
MPGRNLYIVPTSSSFVLEDGSSPLHLGLDIKRYANTIHLSSPSHIELRRP
GDTKPRRFLTYLSQDKNDARLRLEIAPLAHSTAKSLLATFHGKADLLIAK
KGHGLTHAHADAEHRGHGEAAHELVVVEQHRPQGLPGLRDHVLAQVQEQV
HEDHEGHLLERQDLDRHLEGGDRELVHVVHQVAEHGLLPHRLRADVEPHV
VLLDLAEDHGEKLDERDDLLEEPLGRANLPGDGGAERAEELGDHVLERYR
EGQQVGQVRERVPRELLLDEVHRQVPVAQRRHDHGGDAAGRVHEVNLHEL
NLGELREEHLVNTFTMYIAWKYAINYCSTLGSTWMRHIEPATGCITRIRI
GITVLNFKKKLRRSQKNAFTTG*
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mRNA from alignment at tig00000228_pilon:106451..107773-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2166.t1 ID=Gchil2166.t1|Name=Gchil2166.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1323bp|location=Sequence derived from alignment at tig00000228_pilon:106451..107773- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGGGCGTAATCTCTACATTGTACCGACTTCATCTTCATTCGTACT
CGAGGATGGGTCGTCGCCGCTGCATTTGGGACTCGATATCAAGCGATACG
CCAACACCATCCACCTTAGTTCCCCTTCGCACATCGAACTAAGGCGACCC
GGAGATACCAAACCACGTAGATTCTTGACGTATTTGTCCCAGGATAAGAA
CGATGCACGCCTGCGACTCGAAATCGCCCCGCTTGCTCACTCTACTGCTA
AGAGTCTCTTAGCAACATTTCACGGAAAAGCGGATTTGTTGATTGCGAAA
AAGGGACATGGACTTACCCATGCACACGCGGATGCAGAGCATCGTGGACA
TGGCGAAGCAGCCCATGAACTTGTCGTTGTTGAACAGCATCGACCCCAAG
GACTACCTGGGCTTCGGGACCATGTCCTCGCACAAGTACAGGAGCAAGTT
CATGAGGATCATGAAGGACATCTCCTCGAACGCCAGGACCTGGATCGTCA
TCTGGAGGTGGCGTTCAAAAACAAGAACAGGATCTTGTCGGCGACCAGGG
ACATAAAACTCTGAACGACGACATGAACGAGGCCAGGGAGGCGATCGCGA
ACTTGTTCATGTAGTACACCAGGTAGCAGAGCACGGACTCCTTCCCCATC
GTCTGCGTGCCGACGTCGAACCCCACGTTGTGCTCCTTGATCTGGCTGAA
GATCACGGAGAAAAACTCGACGAACGCGACGACCTTCTTGAGGAACCCCT
TGGCCGCGCAAATCTCCCTGGCGACGGCGGCGCAGAACGAGCAGAAGAAC
TGGGAGATCATGTTCTGGAACGATATCGCGAGGGCCAGCAAGTCGGGCAA
GTACGAGAGCGGGTTCCACGAGAGCTACTACTTGACGAAGTCCACCGACA
AGTACCCGTTGCTCAACGCCGACATGACCACGGTGGCGATGCCGCCGGCC
GGGTACACGAGGTCAATCTTCACGAACTGAATCTCGGCGAACTCAGAGAA
GAACATCTAGTGGTACGTGGCTTATCCATGAGTATGTAGGTCTCTAACTT
CTAGTTGTTGATTCACGATCGACCTGATCCGGCAGTTCAGGCTGGCGTGT
GTTGGTCATCTAACATATCACAACTGTACCTGATCAGAATACTTTTACTA
TGTATATCGCATGGAAGTATGCAATAAATTACTGTAGTACTCTCGGGTCC
ACTTGGATGCGACATATCGAACCCGCAACAGGTTGTATTACCAGAATCCG
AATTGGGATCACCGTCTTGAACTTCAAGAAGAAACTGAGAAGAAGTCAGA
AGAACGCTTTCACGACAGGTTGA
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Coding sequence (CDS) from alignment at tig00000228_pilon:106451..107773-

>Gchil2166.t1 ID=Gchil2166.t1|Name=Gchil2166.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1119bp|location=Sequence derived from alignment at tig00000228_pilon:106451..107773- (Gracilaria chilensis NLEC103_M9 male)
ATGCCTGGGCGTAATCTCTACATTGTACCGACTTCATCTTCATTCGTACT
CGAGGATGGGTCGTCGCCGCTGCATTTGGGACTCGATATCAAGCGATACG
CCAACACCATCCACCTTAGTTCCCCTTCGCACATCGAACTAAGGCGACCC
GGAGATACCAAACCACGTAGATTCTTGACGTATTTGTCCCAGGATAAGAA
CGATGCACGCCTGCGACTCGAAATCGCCCCGCTTGCTCACTCTACTGCTA
AGAGTCTCTTAGCAACATTTCACGGAAAAGCGGATTTGTTGATTGCGAAA
AAGGGACATGGACTTACCCATGCACACGCGGATGCAGAGCATCGTGGACA
TGGCGAAGCAGCCCATGAACTTGTCGTTGTTGAACAGCATCGACCCCAAG
GACTACCTGGGCTTCGGGACCATGTCCTCGCACAAGTACAGGAGCAAGTT
CATGAGGATCATGAAGGACATCTCCTCGAACGCCAGGACCTGGATCGTCA
TCTGGAGGGAGGCGATCGCGAACTTGTTCATGTAGTACACCAGGTAGCAG
AGCACGGACTCCTTCCCCATCGTCTGCGTGCCGACGTCGAACCCCACGTT
GTGCTCCTTGATCTGGCTGAAGATCACGGAGAAAAACTCGACGAACGCGA
CGACCTTCTTGAGGAACCCCTTGGCCGCGCAAATCTCCCTGGCGACGGCG
GCGCAGAACGAGCAGAAGAACTGGGAGATCATGTTCTGGAACGATATCGC
GAGGGCCAGCAAGTCGGGCAAGTACGAGAGCGGGTTCCACGAGAGCTACT
ACTTGACGAAGTCCACCGACAAGTACCCGTTGCTCAACGCCGACATGACC
ACGGTGGCGATGCCGCCGGCCGGGTACACGAGGTCAATCTTCACGAACTG
AATCTCGGCGAACTCAGAGAAGAACATCTAGTGAATACTTTTACTATGTA
TATCGCATGGAAGTATGCAATAAATTACTGTAGTACTCTCGGGTCCACTT
GGATGCGACATATCGAACCCGCAACAGGTTGTATTACCAGAATCCGAATT
GGGATCACCGTCTTGAACTTCAAGAAGAAACTGAGAAGAAGTCAGAAGAA
CGCTTTCACGACAGGTTGA
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