Gchil2159.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2159.t1
Unique NameGchil2159.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length483
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:85150..86598 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog159749.K0S3S8
PFAMsGlyco_transf_7C,Glycos_transf_2
Max annot lvl2836|Bacillariophyta
KEGG koko:K00710
KEGG ReactionR05907
KEGG Pathwayko00512,ko01100,map00512,map01100
KEGG ModuleM00056
Evalue2.35e-137
EggNOG OGsKOG3736@1|root,KOG3736@2759|Eukaryota,KOG3737@2759|Eukaryota,2XFQJ@2836|Bacillariophyta
EC2.4.1.41
DescriptionN-terminal domain of galactosyltransferase
COG categoryO
CAZyGT27
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2159Gchil2159Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 85150..86598 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2159.t1.stop1Gchil2159.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 85150..85152 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2159.t1.CDS1Gchil2159.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 85150..86598 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2159.t1.exon1Gchil2159.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 85150..86598 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2159.t1.start1Gchil2159.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 86596..86598 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2159.t1Gchil2159.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 85150..86598 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2159.t1 ID=Gchil2159.t1|Name=Gchil2159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=483bp
MDQLSPSKTRANSLERAIFSPFKHTLSHLLLALFMAAFGWFAHVLTCSTN
VNTINGFEDPPWWLEDTVDDFFSRMYVPGLPAVRKLNVSAYFTGMCGHYR
FNESAMPTASVIVTTQNEQDGMLSLTVQTIIARSPPSLLKDIIIVDDNGL
PPYRDAINETELEQLKLVSPKVKILTNAEREGVARCRMRGSKVATGDVLV
FVDSHVEMLSATWLQHLLLPIIEKPKTIAAQTLDIINDLDWSYGPGSGDL
LLGVISDKFWFSYQRSRFGGPDENGPEKEKPGRRLPYETPFAAGSLFAVR
SDVFTELGGYDEGMYVWGGENTDFALKMWCCGGRVVMVPCSRVGHMYRQH
IKDTGRWPPQLPQKLTDSLHLGQPGPFLVDGMPSSNFSKITTRNNIRVME
RWAKHSTARTGYYKKVLGSETLPEEWKIFANEMKTDKYALQQQEVIDKNQ
CRDFDWFDKHVMVKYAGVHHPWHPATQGRTWI*
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spliced messenger RNA

>Gchil2159.t1 ID=Gchil2159.t1|Name=Gchil2159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000228_pilon:85150..86598- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGATCAGCTATCTCCATCGAAGACACGCGCAAATTCGCTTGAAAGAGC
AATCTTTAGCCCCTTCAAGCACACTCTATCTCATTTGCTTCTCGCGCTAT
TTATGGCCGCGTTCGGCTGGTTTGCTCACGTTCTGACGTGTTCAACAAAT
GTCAACACAATCAACGGCTTTGAGGATCCGCCGTGGTGGCTAGAGGACAC
CGTTGATGACTTCTTTTCTCGGATGTACGTTCCTGGACTGCCAGCAGTGC
GTAAGCTGAACGTGTCAGCTTACTTTACGGGCATGTGCGGTCACTATCGC
TTCAATGAGAGCGCCATGCCCACAGCGAGTGTCATTGTTACCACTCAAAA
CGAGCAGGATGGAATGCTATCGCTAACTGTGCAAACTATTATAGCTCGCA
GTCCACCTTCATTGTTAAAAGACATCATCATTGTGGATGACAATGGATTG
CCGCCATATCGAGACGCTATCAACGAAACAGAGTTGGAGCAACTAAAACT
TGTAAGCCCAAAGGTGAAGATTTTGACAAATGCTGAGAGAGAAGGCGTCG
CCAGATGTCGAATGCGGGGTTCAAAGGTTGCAACGGGCGATGTCCTTGTC
TTTGTTGATAGTCATGTAGAAATGCTCAGCGCAACATGGCTGCAACATCT
TTTACTGCCAATAATTGAGAAACCAAAAACGATTGCAGCTCAAACGCTTG
ACATCATCAACGACCTTGATTGGTCGTATGGACCAGGAAGCGGAGATCTG
CTGTTGGGTGTGATCTCTGACAAATTCTGGTTCAGTTATCAACGATCCCG
TTTTGGTGGCCCAGATGAGAATGGACCTGAAAAGGAAAAGCCAGGTAGAA
GGCTTCCGTATGAAACCCCATTCGCTGCAGGAAGTTTGTTCGCTGTGCGG
AGTGATGTTTTCACGGAGCTAGGTGGGTACGATGAAGGCATGTACGTCTG
GGGTGGAGAAAATACGGACTTTGCTTTAAAGATGTGGTGCTGTGGAGGTC
GGGTGGTAATGGTTCCGTGTTCAAGAGTCGGTCACATGTACCGACAACAT
ATCAAGGACACAGGCCGATGGCCGCCCCAACTTCCCCAAAAGCTCACCGA
CAGTCTTCACCTTGGCCAACCCGGACCATTTCTTGTGGACGGGATGCCGT
CCAGTAATTTCTCAAAGATCACCACGAGAAACAACATTCGTGTTATGGAA
CGGTGGGCAAAGCACTCTACTGCGAGAACAGGGTACTACAAAAAAGTGCT
GGGGTCCGAAACGCTGCCCGAAGAGTGGAAAATATTTGCAAATGAGATGA
AGACGGACAAGTATGCGCTACAGCAGCAAGAAGTAATTGATAAGAACCAA
TGCAGGGATTTCGACTGGTTTGATAAACACGTAATGGTCAAATATGCTGG
TGTTCATCACCCATGGCACCCAGCAACGCAGGGAAGGACATGGATCTGA
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protein sequence of Gchil2159.t1

>Gchil2159.t1 ID=Gchil2159.t1|Name=Gchil2159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=483bp
MDQLSPSKTRANSLERAIFSPFKHTLSHLLLALFMAAFGWFAHVLTCSTN
VNTINGFEDPPWWLEDTVDDFFSRMYVPGLPAVRKLNVSAYFTGMCGHYR
FNESAMPTASVIVTTQNEQDGMLSLTVQTIIARSPPSLLKDIIIVDDNGL
PPYRDAINETELEQLKLVSPKVKILTNAEREGVARCRMRGSKVATGDVLV
FVDSHVEMLSATWLQHLLLPIIEKPKTIAAQTLDIINDLDWSYGPGSGDL
LLGVISDKFWFSYQRSRFGGPDENGPEKEKPGRRLPYETPFAAGSLFAVR
SDVFTELGGYDEGMYVWGGENTDFALKMWCCGGRVVMVPCSRVGHMYRQH
IKDTGRWPPQLPQKLTDSLHLGQPGPFLVDGMPSSNFSKITTRNNIRVME
RWAKHSTARTGYYKKVLGSETLPEEWKIFANEMKTDKYALQQQEVIDKNQ
CRDFDWFDKHVMVKYAGVHHPWHPATQGRTWI*
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mRNA from alignment at tig00000228_pilon:85150..86598-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2159.t1 ID=Gchil2159.t1|Name=Gchil2159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1449bp|location=Sequence derived from alignment at tig00000228_pilon:85150..86598- (Gracilaria chilensis NLEC103_M9 male)
ATGGATCAGCTATCTCCATCGAAGACACGCGCAAATTCGCTTGAAAGAGC
AATCTTTAGCCCCTTCAAGCACACTCTATCTCATTTGCTTCTCGCGCTAT
TTATGGCCGCGTTCGGCTGGTTTGCTCACGTTCTGACGTGTTCAACAAAT
GTCAACACAATCAACGGCTTTGAGGATCCGCCGTGGTGGCTAGAGGACAC
CGTTGATGACTTCTTTTCTCGGATGTACGTTCCTGGACTGCCAGCAGTGC
GTAAGCTGAACGTGTCAGCTTACTTTACGGGCATGTGCGGTCACTATCGC
TTCAATGAGAGCGCCATGCCCACAGCGAGTGTCATTGTTACCACTCAAAA
CGAGCAGGATGGAATGCTATCGCTAACTGTGCAAACTATTATAGCTCGCA
GTCCACCTTCATTGTTAAAAGACATCATCATTGTGGATGACAATGGATTG
CCGCCATATCGAGACGCTATCAACGAAACAGAGTTGGAGCAACTAAAACT
TGTAAGCCCAAAGGTGAAGATTTTGACAAATGCTGAGAGAGAAGGCGTCG
CCAGATGTCGAATGCGGGGTTCAAAGGTTGCAACGGGCGATGTCCTTGTC
TTTGTTGATAGTCATGTAGAAATGCTCAGCGCAACATGGCTGCAACATCT
TTTACTGCCAATAATTGAGAAACCAAAAACGATTGCAGCTCAAACGCTTG
ACATCATCAACGACCTTGATTGGTCGTATGGACCAGGAAGCGGAGATCTG
CTGTTGGGTGTGATCTCTGACAAATTCTGGTTCAGTTATCAACGATCCCG
TTTTGGTGGCCCAGATGAGAATGGACCTGAAAAGGAAAAGCCAGGTAGAA
GGCTTCCGTATGAAACCCCATTCGCTGCAGGAAGTTTGTTCGCTGTGCGG
AGTGATGTTTTCACGGAGCTAGGTGGGTACGATGAAGGCATGTACGTCTG
GGGTGGAGAAAATACGGACTTTGCTTTAAAGATGTGGTGCTGTGGAGGTC
GGGTGGTAATGGTTCCGTGTTCAAGAGTCGGTCACATGTACCGACAACAT
ATCAAGGACACAGGCCGATGGCCGCCCCAACTTCCCCAAAAGCTCACCGA
CAGTCTTCACCTTGGCCAACCCGGACCATTTCTTGTGGACGGGATGCCGT
CCAGTAATTTCTCAAAGATCACCACGAGAAACAACATTCGTGTTATGGAA
CGGTGGGCAAAGCACTCTACTGCGAGAACAGGGTACTACAAAAAAGTGCT
GGGGTCCGAAACGCTGCCCGAAGAGTGGAAAATATTTGCAAATGAGATGA
AGACGGACAAGTATGCGCTACAGCAGCAAGAAGTAATTGATAAGAACCAA
TGCAGGGATTTCGACTGGTTTGATAAACACGTAATGGTCAAATATGCTGG
TGTTCATCACCCATGGCACCCAGCAACGCAGGGAAGGACATGGATCTGA
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Coding sequence (CDS) from alignment at tig00000228_pilon:85150..86598-

>Gchil2159.t1 ID=Gchil2159.t1|Name=Gchil2159.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1449bp|location=Sequence derived from alignment at tig00000228_pilon:85150..86598- (Gracilaria chilensis NLEC103_M9 male)
ATGGATCAGCTATCTCCATCGAAGACACGCGCAAATTCGCTTGAAAGAGC
AATCTTTAGCCCCTTCAAGCACACTCTATCTCATTTGCTTCTCGCGCTAT
TTATGGCCGCGTTCGGCTGGTTTGCTCACGTTCTGACGTGTTCAACAAAT
GTCAACACAATCAACGGCTTTGAGGATCCGCCGTGGTGGCTAGAGGACAC
CGTTGATGACTTCTTTTCTCGGATGTACGTTCCTGGACTGCCAGCAGTGC
GTAAGCTGAACGTGTCAGCTTACTTTACGGGCATGTGCGGTCACTATCGC
TTCAATGAGAGCGCCATGCCCACAGCGAGTGTCATTGTTACCACTCAAAA
CGAGCAGGATGGAATGCTATCGCTAACTGTGCAAACTATTATAGCTCGCA
GTCCACCTTCATTGTTAAAAGACATCATCATTGTGGATGACAATGGATTG
CCGCCATATCGAGACGCTATCAACGAAACAGAGTTGGAGCAACTAAAACT
TGTAAGCCCAAAGGTGAAGATTTTGACAAATGCTGAGAGAGAAGGCGTCG
CCAGATGTCGAATGCGGGGTTCAAAGGTTGCAACGGGCGATGTCCTTGTC
TTTGTTGATAGTCATGTAGAAATGCTCAGCGCAACATGGCTGCAACATCT
TTTACTGCCAATAATTGAGAAACCAAAAACGATTGCAGCTCAAACGCTTG
ACATCATCAACGACCTTGATTGGTCGTATGGACCAGGAAGCGGAGATCTG
CTGTTGGGTGTGATCTCTGACAAATTCTGGTTCAGTTATCAACGATCCCG
TTTTGGTGGCCCAGATGAGAATGGACCTGAAAAGGAAAAGCCAGGTAGAA
GGCTTCCGTATGAAACCCCATTCGCTGCAGGAAGTTTGTTCGCTGTGCGG
AGTGATGTTTTCACGGAGCTAGGTGGGTACGATGAAGGCATGTACGTCTG
GGGTGGAGAAAATACGGACTTTGCTTTAAAGATGTGGTGCTGTGGAGGTC
GGGTGGTAATGGTTCCGTGTTCAAGAGTCGGTCACATGTACCGACAACAT
ATCAAGGACACAGGCCGATGGCCGCCCCAACTTCCCCAAAAGCTCACCGA
CAGTCTTCACCTTGGCCAACCCGGACCATTTCTTGTGGACGGGATGCCGT
CCAGTAATTTCTCAAAGATCACCACGAGAAACAACATTCGTGTTATGGAA
CGGTGGGCAAAGCACTCTACTGCGAGAACAGGGTACTACAAAAAAGTGCT
GGGGTCCGAAACGCTGCCCGAAGAGTGGAAAATATTTGCAAATGAGATGA
AGACGGACAAGTATGCGCTACAGCAGCAAGAAGTAATTGATAAGAACCAA
TGCAGGGATTTCGACTGGTTTGATAAACACGTAATGGTCAAATATGCTGG
TGTTCATCACCCATGGCACCCAGCAACGCAGGGAAGGACATGGATCTGA
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