Gchil2157.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2157.t1
Unique Name	Gchil2157.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	758

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000228_pilon	contig	tig00000228_pilon:79881..82154 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Properties


Property Name	Value
Seed ortholog	130081.XP_005705062.1
Preferred name	YTM1
PFAMs	Dsl1_C,NLE,WD40,Zw10
Max annot lvl	2759\|Eukaryota
KEGG ko	ko:K11578,ko:K11790
Evalue	2.32e-20
EggNOG OGs	KOG2163@1\|root,KOG2163@2759\|Eukaryota
Description	spindle assembly checkpoint
COG category	S
BRITE	ko00000,ko03036,ko04121,ko04131

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2157	Gchil2157	Gracilaria chilensis NLEC103_M9 male	gene	tig00000228_pilon 79881..82154 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2157.t1.start1	Gchil2157.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000228_pilon 79881..79883 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2157.t1.CDS1	Gchil2157.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000228_pilon 79881..82154 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2157.t1.exon1	Gchil2157.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000228_pilon 79881..82154 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2157.t1.stop1	Gchil2157.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000228_pilon 82152..82154 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2157.t1	Gchil2157.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000228_pilon 79881..82154 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000228_pilon:79881..82154+
coding sequence from alignment at tig00000228_pilon:79881..82154+

mRNA sequence

>Gchil2157.t1 ID=Gchil2157.t1|Name=Gchil2157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=758bp
MVATRVLDEALRGGEPARLLEQRCLDSLRKAEENVKEAVATAPDFIADSK
AKHEILLTNSADINTMIEMLGESLDEVTQRTQEMNERSQLYAKKKEALDS
LAVELAPFVKVANALEVSDHIAEASFAQLQQAISLLQETVFIASESGYPQ
LTRMVSEFNERADEATALMKARYMDTFEVRFNSIIARGKVRSASSVSFIP
VGASSASLAKAGMLEEAIQGIVRELLRNQVTKGLAQATVFFESSTDHSVS
LEWSTGVEDSSELLEFDVDDLETVSEDEIDFMSQHLDISNTAARALRIYD
VFRDHVVGSDYSRPLAEAMQPWFSEHVLPSSIVVNSLRNSLHSTISPEML
RSRVMAVCACAKVLQEAMRARGATSFKLSLDKSTLEEATGAECRAQNVLK
ARKVIGSFSEARHDDNEMVECPLSATEYIPRSDRPPDYFAPCLVTRTAVT
VHDVFFSARRDAEKAVQSGSALIGESLNSAAIECLRAYREDIPIQHSSEI
RASLRLKALFYNDCLMLAHACHQSLKRFGHSTGVENQKRLLENAANKVMV
IVRRTAEQRLIENLNAACRNGSLGAYGTLTRIQRSSALSGAFNAMREVIH
VFAEIVPTELAEIAASTLLQKYLTILINEVMSLPEISADGCEQISAILQD
ANKNVGSLMTSVTSIEKLRGKANPPEIVSQLRRSQQKLETIREILNARME
DIVISFRAGKYSGLISRIEVEHLLKAIFEDTPLRSGFIADLDISLEQESQ
EWENSNW*

spliced messenger RNA

>Gchil2157.t1 ID=Gchil2157.t1|Name=Gchil2157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2274bp|location=Sequence derived from alignment at tig00000228_pilon:79881..82154+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGTTGCCACGCGGGTTCTTGATGAGGCGTTGCGCGGTGGTGAACCAGC
TCGATTACTCGAACAGCGCTGTTTGGACTCCTTGCGAAAAGCAGAAGAAA
ATGTCAAAGAAGCAGTGGCTACGGCACCAGATTTCATCGCAGATTCGAAA
GCTAAACATGAAATACTTCTTACCAATTCTGCTGATATCAATACTATGAT
CGAGATGCTTGGTGAATCTCTGGACGAGGTCACACAGAGAACACAGGAAA
TGAACGAGAGGTCCCAGTTGTATGCTAAGAAGAAAGAGGCTCTGGATAGT
CTTGCGGTGGAACTCGCCCCATTCGTCAAAGTGGCCAACGCCCTCGAGGT
TTCTGACCACATCGCCGAAGCCTCGTTCGCGCAGCTTCAGCAAGCTATAT
CTCTGCTGCAAGAGACGGTCTTCATCGCCTCTGAATCTGGTTATCCCCAA
TTGACACGGATGGTGAGCGAATTTAATGAACGAGCAGATGAAGCAACTGC
GTTGATGAAGGCGCGTTACATGGACACCTTTGAAGTTCGCTTTAATTCAA
TTATTGCTCGCGGTAAAGTACGTTCGGCTTCAAGTGTAAGTTTCATTCCT
GTTGGCGCTTCATCTGCTTCCCTTGCCAAAGCTGGTATGCTGGAGGAGGC
CATCCAAGGTATTGTGAGAGAATTGTTGCGTAATCAGGTGACCAAAGGTC
TTGCGCAAGCCACTGTCTTCTTTGAAAGTTCCACCGATCACAGTGTCAGT
TTAGAATGGTCGACAGGTGTTGAAGATTCTTCAGAGCTCCTAGAATTTGA
TGTAGACGACCTGGAAACTGTGTCTGAAGACGAAATTGATTTTATGTCAC
AACACCTGGACATCTCAAATACAGCAGCTAGAGCACTTAGGATTTACGAT
GTGTTTCGCGATCATGTGGTCGGCTCCGACTACTCAAGACCACTTGCCGA
AGCCATGCAACCGTGGTTTTCCGAGCACGTCTTGCCTTCCTCTATTGTGG
TCAATAGTCTTCGAAACTCCCTTCACAGCACTATTTCGCCAGAAATGCTT
AGATCTAGAGTAATGGCTGTTTGTGCTTGTGCTAAAGTACTCCAAGAAGC
TATGCGAGCTCGTGGAGCTACTTCCTTCAAACTATCGTTGGATAAGAGCA
CCCTAGAGGAAGCAACTGGGGCGGAATGCAGAGCCCAAAATGTCTTGAAA
GCTAGGAAGGTAATCGGATCCTTTTCAGAAGCCAGGCATGATGACAACGA
AATGGTTGAATGCCCCCTTTCTGCTACCGAGTACATTCCTCGCAGTGATC
GTCCACCAGATTATTTTGCTCCCTGCCTTGTAACTCGTACCGCAGTAACC
GTTCACGACGTGTTTTTTTCGGCAAGAAGAGACGCGGAGAAAGCTGTTCA
AAGCGGCTCCGCATTGATTGGAGAATCTCTCAACTCCGCCGCAATAGAAT
GTTTACGAGCGTACCGAGAAGACATTCCAATACAACATAGTTCTGAGATT
CGTGCAAGTCTCAGATTAAAGGCATTGTTCTACAATGACTGCTTGATGCT
TGCTCACGCTTGTCATCAATCGTTGAAAAGATTTGGGCATTCCACAGGCG
TGGAGAACCAAAAGCGTCTACTGGAAAATGCGGCCAATAAAGTGATGGTC
ATCGTTCGCCGTACAGCTGAGCAAAGACTGATCGAAAATCTAAACGCTGC
ATGTCGAAACGGATCATTAGGAGCGTATGGGACTCTAACCCGCATTCAAA
GAAGCTCAGCCTTGTCTGGGGCATTTAACGCAATGCGCGAGGTTATTCAC
GTCTTCGCAGAAATCGTTCCCACCGAGCTTGCCGAAATCGCTGCCAGTAC
ACTGCTGCAGAAATACTTGACAATCCTGATTAACGAAGTCATGTCCTTAC
CGGAGATAAGTGCGGATGGATGTGAACAGATAAGTGCTATTTTGCAAGAT
GCCAACAAGAACGTGGGTAGTCTGATGACTTCAGTTACGAGCATAGAGAA
ATTAAGAGGAAAAGCTAACCCCCCGGAAATTGTTTCTCAATTGCGTCGCT
CCCAGCAGAAGCTGGAAACGATCCGAGAAATTCTTAACGCTCGTATGGAA
GACATAGTCATATCATTTCGAGCTGGGAAGTATAGCGGGTTGatcagtcg
aatagaggtcgaacatttgctgaaagcaatctttgaagataccccgctgc
gttctggatttattgcagacttggatattagcttagagcaAGAATCGCAG
GAATGGGAGAACAGCAACTGGTGA

protein sequence of Gchil2157.t1

>Gchil2157.t1 ID=Gchil2157.t1|Name=Gchil2157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=758bp
MVATRVLDEALRGGEPARLLEQRCLDSLRKAEENVKEAVATAPDFIADSK
AKHEILLTNSADINTMIEMLGESLDEVTQRTQEMNERSQLYAKKKEALDS
LAVELAPFVKVANALEVSDHIAEASFAQLQQAISLLQETVFIASESGYPQ
LTRMVSEFNERADEATALMKARYMDTFEVRFNSIIARGKVRSASSVSFIP
VGASSASLAKAGMLEEAIQGIVRELLRNQVTKGLAQATVFFESSTDHSVS
LEWSTGVEDSSELLEFDVDDLETVSEDEIDFMSQHLDISNTAARALRIYD
VFRDHVVGSDYSRPLAEAMQPWFSEHVLPSSIVVNSLRNSLHSTISPEML
RSRVMAVCACAKVLQEAMRARGATSFKLSLDKSTLEEATGAECRAQNVLK
ARKVIGSFSEARHDDNEMVECPLSATEYIPRSDRPPDYFAPCLVTRTAVT
VHDVFFSARRDAEKAVQSGSALIGESLNSAAIECLRAYREDIPIQHSSEI
RASLRLKALFYNDCLMLAHACHQSLKRFGHSTGVENQKRLLENAANKVMV
IVRRTAEQRLIENLNAACRNGSLGAYGTLTRIQRSSALSGAFNAMREVIH
VFAEIVPTELAEIAASTLLQKYLTILINEVMSLPEISADGCEQISAILQD
ANKNVGSLMTSVTSIEKLRGKANPPEIVSQLRRSQQKLETIREILNARME
DIVISFRAGKYSGLISRIEVEHLLKAIFEDTPLRSGFIADLDISLEQESQ
EWENSNW*

mRNA from alignment at tig00000228_pilon:79881..82154+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2157.t1 ID=Gchil2157.t1|Name=Gchil2157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2274bp|location=Sequence derived from alignment at tig00000228_pilon:79881..82154+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGCCACGCGGGTTCTTGATGAGGCGTTGCGCGGTGGTGAACCAGC
TCGATTACTCGAACAGCGCTGTTTGGACTCCTTGCGAAAAGCAGAAGAAA
ATGTCAAAGAAGCAGTGGCTACGGCACCAGATTTCATCGCAGATTCGAAA
GCTAAACATGAAATACTTCTTACCAATTCTGCTGATATCAATACTATGAT
CGAGATGCTTGGTGAATCTCTGGACGAGGTCACACAGAGAACACAGGAAA
TGAACGAGAGGTCCCAGTTGTATGCTAAGAAGAAAGAGGCTCTGGATAGT
CTTGCGGTGGAACTCGCCCCATTCGTCAAAGTGGCCAACGCCCTCGAGGT
TTCTGACCACATCGCCGAAGCCTCGTTCGCGCAGCTTCAGCAAGCTATAT
CTCTGCTGCAAGAGACGGTCTTCATCGCCTCTGAATCTGGTTATCCCCAA
TTGACACGGATGGTGAGCGAATTTAATGAACGAGCAGATGAAGCAACTGC
GTTGATGAAGGCGCGTTACATGGACACCTTTGAAGTTCGCTTTAATTCAA
TTATTGCTCGCGGTAAAGTACGTTCGGCTTCAAGTGTAAGTTTCATTCCT
GTTGGCGCTTCATCTGCTTCCCTTGCCAAAGCTGGTATGCTGGAGGAGGC
CATCCAAGGTATTGTGAGAGAATTGTTGCGTAATCAGGTGACCAAAGGTC
TTGCGCAAGCCACTGTCTTCTTTGAAAGTTCCACCGATCACAGTGTCAGT
TTAGAATGGTCGACAGGTGTTGAAGATTCTTCAGAGCTCCTAGAATTTGA
TGTAGACGACCTGGAAACTGTGTCTGAAGACGAAATTGATTTTATGTCAC
AACACCTGGACATCTCAAATACAGCAGCTAGAGCACTTAGGATTTACGAT
GTGTTTCGCGATCATGTGGTCGGCTCCGACTACTCAAGACCACTTGCCGA
AGCCATGCAACCGTGGTTTTCCGAGCACGTCTTGCCTTCCTCTATTGTGG
TCAATAGTCTTCGAAACTCCCTTCACAGCACTATTTCGCCAGAAATGCTT
AGATCTAGAGTAATGGCTGTTTGTGCTTGTGCTAAAGTACTCCAAGAAGC
TATGCGAGCTCGTGGAGCTACTTCCTTCAAACTATCGTTGGATAAGAGCA
CCCTAGAGGAAGCAACTGGGGCGGAATGCAGAGCCCAAAATGTCTTGAAA
GCTAGGAAGGTAATCGGATCCTTTTCAGAAGCCAGGCATGATGACAACGA
AATGGTTGAATGCCCCCTTTCTGCTACCGAGTACATTCCTCGCAGTGATC
GTCCACCAGATTATTTTGCTCCCTGCCTTGTAACTCGTACCGCAGTAACC
GTTCACGACGTGTTTTTTTCGGCAAGAAGAGACGCGGAGAAAGCTGTTCA
AAGCGGCTCCGCATTGATTGGAGAATCTCTCAACTCCGCCGCAATAGAAT
GTTTACGAGCGTACCGAGAAGACATTCCAATACAACATAGTTCTGAGATT
CGTGCAAGTCTCAGATTAAAGGCATTGTTCTACAATGACTGCTTGATGCT
TGCTCACGCTTGTCATCAATCGTTGAAAAGATTTGGGCATTCCACAGGCG
TGGAGAACCAAAAGCGTCTACTGGAAAATGCGGCCAATAAAGTGATGGTC
ATCGTTCGCCGTACAGCTGAGCAAAGACTGATCGAAAATCTAAACGCTGC
ATGTCGAAACGGATCATTAGGAGCGTATGGGACTCTAACCCGCATTCAAA
GAAGCTCAGCCTTGTCTGGGGCATTTAACGCAATGCGCGAGGTTATTCAC
GTCTTCGCAGAAATCGTTCCCACCGAGCTTGCCGAAATCGCTGCCAGTAC
ACTGCTGCAGAAATACTTGACAATCCTGATTAACGAAGTCATGTCCTTAC
CGGAGATAAGTGCGGATGGATGTGAACAGATAAGTGCTATTTTGCAAGAT
GCCAACAAGAACGTGGGTAGTCTGATGACTTCAGTTACGAGCATAGAGAA
ATTAAGAGGAAAAGCTAACCCCCCGGAAATTGTTTCTCAATTGCGTCGCT
CCCAGCAGAAGCTGGAAACGATCCGAGAAATTCTTAACGCTCGTATGGAA
GACATAGTCATATCATTTCGAGCTGGGAAGTATAGCGGGTTGatcagtcg
aatagaggtcgaacatttgctgaaagcaatctttgaagataccccgctgc
gttctggatttattgcagacttggatattagcttagagcaAGAATCGCAG
GAATGGGAGAACAGCAACTGGTGA

Coding sequence (CDS) from alignment at tig00000228_pilon:79881..82154+

>Gchil2157.t1 ID=Gchil2157.t1|Name=Gchil2157.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2274bp|location=Sequence derived from alignment at tig00000228_pilon:79881..82154+ (Gracilaria chilensis NLEC103_M9 male)
ATGGTTGCCACGCGGGTTCTTGATGAGGCGTTGCGCGGTGGTGAACCAGC
TCGATTACTCGAACAGCGCTGTTTGGACTCCTTGCGAAAAGCAGAAGAAA
ATGTCAAAGAAGCAGTGGCTACGGCACCAGATTTCATCGCAGATTCGAAA
GCTAAACATGAAATACTTCTTACCAATTCTGCTGATATCAATACTATGAT
CGAGATGCTTGGTGAATCTCTGGACGAGGTCACACAGAGAACACAGGAAA
TGAACGAGAGGTCCCAGTTGTATGCTAAGAAGAAAGAGGCTCTGGATAGT
CTTGCGGTGGAACTCGCCCCATTCGTCAAAGTGGCCAACGCCCTCGAGGT
TTCTGACCACATCGCCGAAGCCTCGTTCGCGCAGCTTCAGCAAGCTATAT
CTCTGCTGCAAGAGACGGTCTTCATCGCCTCTGAATCTGGTTATCCCCAA
TTGACACGGATGGTGAGCGAATTTAATGAACGAGCAGATGAAGCAACTGC
GTTGATGAAGGCGCGTTACATGGACACCTTTGAAGTTCGCTTTAATTCAA
TTATTGCTCGCGGTAAAGTACGTTCGGCTTCAAGTGTAAGTTTCATTCCT
GTTGGCGCTTCATCTGCTTCCCTTGCCAAAGCTGGTATGCTGGAGGAGGC
CATCCAAGGTATTGTGAGAGAATTGTTGCGTAATCAGGTGACCAAAGGTC
TTGCGCAAGCCACTGTCTTCTTTGAAAGTTCCACCGATCACAGTGTCAGT
TTAGAATGGTCGACAGGTGTTGAAGATTCTTCAGAGCTCCTAGAATTTGA
TGTAGACGACCTGGAAACTGTGTCTGAAGACGAAATTGATTTTATGTCAC
AACACCTGGACATCTCAAATACAGCAGCTAGAGCACTTAGGATTTACGAT
GTGTTTCGCGATCATGTGGTCGGCTCCGACTACTCAAGACCACTTGCCGA
AGCCATGCAACCGTGGTTTTCCGAGCACGTCTTGCCTTCCTCTATTGTGG
TCAATAGTCTTCGAAACTCCCTTCACAGCACTATTTCGCCAGAAATGCTT
AGATCTAGAGTAATGGCTGTTTGTGCTTGTGCTAAAGTACTCCAAGAAGC
TATGCGAGCTCGTGGAGCTACTTCCTTCAAACTATCGTTGGATAAGAGCA
CCCTAGAGGAAGCAACTGGGGCGGAATGCAGAGCCCAAAATGTCTTGAAA
GCTAGGAAGGTAATCGGATCCTTTTCAGAAGCCAGGCATGATGACAACGA
AATGGTTGAATGCCCCCTTTCTGCTACCGAGTACATTCCTCGCAGTGATC
GTCCACCAGATTATTTTGCTCCCTGCCTTGTAACTCGTACCGCAGTAACC
GTTCACGACGTGTTTTTTTCGGCAAGAAGAGACGCGGAGAAAGCTGTTCA
AAGCGGCTCCGCATTGATTGGAGAATCTCTCAACTCCGCCGCAATAGAAT
GTTTACGAGCGTACCGAGAAGACATTCCAATACAACATAGTTCTGAGATT
CGTGCAAGTCTCAGATTAAAGGCATTGTTCTACAATGACTGCTTGATGCT
TGCTCACGCTTGTCATCAATCGTTGAAAAGATTTGGGCATTCCACAGGCG
TGGAGAACCAAAAGCGTCTACTGGAAAATGCGGCCAATAAAGTGATGGTC
ATCGTTCGCCGTACAGCTGAGCAAAGACTGATCGAAAATCTAAACGCTGC
ATGTCGAAACGGATCATTAGGAGCGTATGGGACTCTAACCCGCATTCAAA
GAAGCTCAGCCTTGTCTGGGGCATTTAACGCAATGCGCGAGGTTATTCAC
GTCTTCGCAGAAATCGTTCCCACCGAGCTTGCCGAAATCGCTGCCAGTAC
ACTGCTGCAGAAATACTTGACAATCCTGATTAACGAAGTCATGTCCTTAC
CGGAGATAAGTGCGGATGGATGTGAACAGATAAGTGCTATTTTGCAAGAT
GCCAACAAGAACGTGGGTAGTCTGATGACTTCAGTTACGAGCATAGAGAA
ATTAAGAGGAAAAGCTAACCCCCCGGAAATTGTTTCTCAATTGCGTCGCT
CCCAGCAGAAGCTGGAAACGATCCGAGAAATTCTTAACGCTCGTATGGAA
GACATAGTCATATCATTTCGAGCTGGGAAGTATAGCGGGTTGatcagtcg
aatagaggtcgaacatttgctgaaagcaatctttgaagataccccgctgc
gttctggatttattgcagacttggatattagcttagagcaAGAATCGCAG
GAATGGGAGAACAGCAACTGGTGA