Gchil2154.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2154.t1
Unique NameGchil2154.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length510
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:65402..66999 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog3218.PP1S162_132V6.1
PFAMsANAPC4_WD40,WD40
Max annot lvl35493|Streptophyta
KEGG koko:K14003
KEGG Pathwayko04141,map04141
GOsGO:0002790,GO:0003400,GO:0003674,GO:0005085,GO:0005090,GO:0005096,GO:0005488,GO:0005515,GO:0005575,GO:0005622,GO:0005623,GO:0005737,GO:0005773,GO:0005774,GO:0005783,GO:0005789,GO:0005886,GO:0006810,GO:0006888,GO:0008047,GO:0008104,GO:0008150,GO:0009306,GO:0009987,GO:0012505,GO:0015031,GO:0015833,GO:0016020,GO:0016021,GO:0016192,GO:0019899,GO:0030176,GO:0030234,GO:0030695,GO:0031090,GO:0031224,GO:0031227,GO:0031984,GO:0032386,GO:0032879,GO:0032940,GO:0033036,GO:0033043,GO:0042175,GO:0042886,GO:0043085,GO:0043087,GO:0043226,GO:0043227,GO:0043229,GO:0043231,GO:0043254,GO:0043547,GO:0044087,GO:0044093,GO:0044422,GO:0044424,GO:0044425,GO:0044432,GO:0044437,GO:0044444,GO:0044446,GO:0044464,GO:0045184,GO:0046903,GO:0046907,GO:0048193,GO:0048209,GO:0050789,GO:0050790,GO:0050794,GO:0051020,GO:0051049,GO:0051128,GO:0051179,GO:0051234,GO:0051336,GO:0051345,GO:0051641,GO:0051649,GO:0060341,GO:0060589,GO:0060627,GO:0060628,GO:0065007,GO:0065009,GO:0071702,GO:0071705,GO:0071944,GO:0090113,GO:0098588,GO:0098772,GO:0098805,GO:0098827
Evalue1.58e-13
EggNOG OGsKOG0771@1|root,KOG0771@2759|Eukaryota,37IAV@33090|Viridiplantae,3GB5Y@35493|Streptophyta
DescriptionSec12-like protein 2
COG categoryU
BRITEko00000,ko00001,ko04131
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2154Gchil2154Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 65402..66999 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2154.t1Gchil2154.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 65402..66999 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2154.t1.stop1Gchil2154.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 65402..65404 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2154.t1.CDS1Gchil2154.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 65402..66808 -
Gchil2154.t1.CDS2Gchil2154.t1.CDS2Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 66877..66999 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2154.t1.exon1Gchil2154.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 65402..66808 -
Gchil2154.t1.exon2Gchil2154.t1.exon2Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 66877..66999 -


The following intron feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2154.t1.intron1Gchil2154.t1.intron1Gracilaria chilensis NLEC103_M9 maleintrontig00000228_pilon 66809..66876 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2154.t1.start1Gchil2154.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 66997..66999 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2154.t1 ID=Gchil2154.t1|Name=Gchil2154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=510bp
MEPLDRVVFTFPIYGLDLLPGAGIVVAGGGGRMKSGIPNVCQVLTFDEKK
IALTPTAMVEISDAAVALSTHENVIHLAIGPGVKDYSFVHDKLVPVSSFQ
HDLQVSTSVEQTAIAASEDASTLIIASDDGSVVVLRLERFEPVFSGRIHT
NGINDLCVSSDGSLVATTGRDKAAHIWRSRDGEILQTLKPVMPISHRTHI
RAIRFCSMQSDIVFSAESNPRKGAWIAAWRKPSPSETTLYSPVAKIRASN
DALTAMSVNTDGSLVASSSAEGHVSLFSWNGTAFSRMWSTETRTNFFRTP
KPPHILPVTGMRFSVSGKHVFAASADYTVSVWPTRLPTRWSRCVRVFFWI
TSILVLVLAMLIVEDEHLHEEVRKRRAMVVPYMEPHLSEVQRAVRPLLQE
GNTAIQPHLTELKKRTVEYTSRLSQQTSPLLQSMEKGYRNLVVKIHDYRY
AQESGHSTSLDSESTILSADDQNEKENCERAQEGKQIILHVYKAEKSSDS
SDESFSIHP*
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spliced messenger RNA

>Gchil2154.t1 ID=Gchil2154.t1|Name=Gchil2154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1530bp|location=Sequence derived from alignment at tig00000228_pilon:65402..66999- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGGAACCGCTCGACCGCGTTGTTTTTACCTTTCCAATTTATGGTCTCGA
TCTTCTGCCAGGTGCAGGTATTGTCGTCGCCGGCGGTGGCGGACGTATGA
AGAGCGGTATTCCAAATGTTTGTCAAGTCTTGACCTTCGATGAAAAGAAG
ATTGCTTTGACCCCAACTGCAATGGTGGAGATTTCAGATGCCGCTGTAGC
TCTTTCCACGCATGAAAATGTTATCCATCTTGCCATCGGTCCTGGGGTAA
AGGATTACAGTTTTGTGCATGATAAGTTGGTACCTGTGTCTTCTTTCCAA
CACGATTTGCAGGTATCCACGAGCGTAGAACAAACAGCAATTGCAGCTTC
TGAAGATGCATCAACTCTCATCATAGCCTCCGATGATGGTAGCGTGGTTG
TTCTTCGCTTGGAACGCTTCGAACCCGTTTTCAGTGGTCGAATCCATACG
AATGGAATCAATGATCTTTGCGTCAGTTCTGATGGGTCCTTGGTGGCCAC
TACTGGTCGAGATAAGGCAGCCCATATATGGAGAAGTCGAGACGGAGAAA
TCTTGCAGACTTTGAAACCTGTAATGCCCATCTCGCATCGCACCCACATC
CGAGCAATTCGCTTTTGTTCAATGCAATCCGATATAGTCTTCTCAGCAGA
GAGTAATCCCCGAAAAGGCGCATGGATTGCAGCTTGGCGCAAACCGAGTC
CATCTGAGACTACTCTTTATTCACCTGTGGCCAAAATCAGAGCTTCGAAC
GACGCTTTAACAGCCATGAGCGTCAATACAGACGGATCGCTTGTGGCCAG
CAGTTCTGCTGAGGGTCACGTTTCTCTGTTTTCCTGGAACGGGACTGCAT
TCTCAAGAATGTGGAGCACGGAGACTCGAACTAATTTTTTTAGGACACCA
AAACCGCCGCATATTCTTCCAGTGACAGGAATGCGTTTCTCGGTCTCTGG
GAAGCACGTCTTTGCGGCTTCTGCAGACTACACGGTTTCAGTCTGGCCAA
CTAGGTTGCCAACAAGATGGAGCAGGTGCGTTCGTGTCTTTTTCTGGATC
ACAAGCATCCTAGTGTTGGTGCTTGCGATGTTAATTGTCGAAGATGAGCA
TCTTCACGAGGAGGTTCGCAAGCGGCGAGCCATGGTTGTACCATACATGG
AACCACACTTATCGGAAGTACAGCGGGCTGTGCGGCCGCTTCTGCAGGAG
GGTAACACAGCAATTCAACCACATTTAACGGAGTTGAAAAAAAGAACGGT
CGAATATACTTCTCGCCTTTCCCAACAGACAAGCCCTCTTCTTCAGAGCA
TGGAAAAGGGTTACCGAAATCTAGTCGTCAAGATCCATGACTACAGATAT
GCCCAGGAGTCTGGACATTCGACATCGCTCGACAGCGAGTCTACCATTTT
GTCAGCAGATGACCAAAACGAAAAAGAGAACTGCGAGCGCGCGCAAGAGG
GAAAGCAAATTATACTGCACGTATACAAAGCTGAAAAGTCAAGCGATTCG
TCGGACGAGTCTTTCAGTATTCATCCATGA
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protein sequence of Gchil2154.t1

>Gchil2154.t1 ID=Gchil2154.t1|Name=Gchil2154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=510bp
MEPLDRVVFTFPIYGLDLLPGAGIVVAGGGGRMKSGIPNVCQVLTFDEKK
IALTPTAMVEISDAAVALSTHENVIHLAIGPGVKDYSFVHDKLVPVSSFQ
HDLQVSTSVEQTAIAASEDASTLIIASDDGSVVVLRLERFEPVFSGRIHT
NGINDLCVSSDGSLVATTGRDKAAHIWRSRDGEILQTLKPVMPISHRTHI
RAIRFCSMQSDIVFSAESNPRKGAWIAAWRKPSPSETTLYSPVAKIRASN
DALTAMSVNTDGSLVASSSAEGHVSLFSWNGTAFSRMWSTETRTNFFRTP
KPPHILPVTGMRFSVSGKHVFAASADYTVSVWPTRLPTRWSRCVRVFFWI
TSILVLVLAMLIVEDEHLHEEVRKRRAMVVPYMEPHLSEVQRAVRPLLQE
GNTAIQPHLTELKKRTVEYTSRLSQQTSPLLQSMEKGYRNLVVKIHDYRY
AQESGHSTSLDSESTILSADDQNEKENCERAQEGKQIILHVYKAEKSSDS
SDESFSIHP*
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mRNA from alignment at tig00000228_pilon:65402..66999-

Legend: polypeptideCDSexonstart_codonintronstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2154.t1 ID=Gchil2154.t1|Name=Gchil2154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1598bp|location=Sequence derived from alignment at tig00000228_pilon:65402..66999- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACCGCTCGACCGCGTTGTTTTTACCTTTCCAATTTATGGTCTCGA
TCTTCTGCCAGGTGCAGGTATTGTCGTCGCCGGCGGTGGCGGACGTATGA
AGAGCGGTATTCCAAATGTTTGTGTAAGTTGAATCCATGTTTACATACCA
AGTCTGTCAGTAAGAGCGTTCTAACAACGTGCAAAGCGCAGCAAGTCTTG
ACCTTCGATGAAAAGAAGATTGCTTTGACCCCAACTGCAATGGTGGAGAT
TTCAGATGCCGCTGTAGCTCTTTCCACGCATGAAAATGTTATCCATCTTG
CCATCGGTCCTGGGGTAAAGGATTACAGTTTTGTGCATGATAAGTTGGTA
CCTGTGTCTTCTTTCCAACACGATTTGCAGGTATCCACGAGCGTAGAACA
AACAGCAATTGCAGCTTCTGAAGATGCATCAACTCTCATCATAGCCTCCG
ATGATGGTAGCGTGGTTGTTCTTCGCTTGGAACGCTTCGAACCCGTTTTC
AGTGGTCGAATCCATACGAATGGAATCAATGATCTTTGCGTCAGTTCTGA
TGGGTCCTTGGTGGCCACTACTGGTCGAGATAAGGCAGCCCATATATGGA
GAAGTCGAGACGGAGAAATCTTGCAGACTTTGAAACCTGTAATGCCCATC
TCGCATCGCACCCACATCCGAGCAATTCGCTTTTGTTCAATGCAATCCGA
TATAGTCTTCTCAGCAGAGAGTAATCCCCGAAAAGGCGCATGGATTGCAG
CTTGGCGCAAACCGAGTCCATCTGAGACTACTCTTTATTCACCTGTGGCC
AAAATCAGAGCTTCGAACGACGCTTTAACAGCCATGAGCGTCAATACAGA
CGGATCGCTTGTGGCCAGCAGTTCTGCTGAGGGTCACGTTTCTCTGTTTT
CCTGGAACGGGACTGCATTCTCAAGAATGTGGAGCACGGAGACTCGAACT
AATTTTTTTAGGACACCAAAACCGCCGCATATTCTTCCAGTGACAGGAAT
GCGTTTCTCGGTCTCTGGGAAGCACGTCTTTGCGGCTTCTGCAGACTACA
CGGTTTCAGTCTGGCCAACTAGGTTGCCAACAAGATGGAGCAGGTGCGTT
CGTGTCTTTTTCTGGATCACAAGCATCCTAGTGTTGGTGCTTGCGATGTT
AATTGTCGAAGATGAGCATCTTCACGAGGAGGTTCGCAAGCGGCGAGCCA
TGGTTGTACCATACATGGAACCACACTTATCGGAAGTACAGCGGGCTGTG
CGGCCGCTTCTGCAGGAGGGTAACACAGCAATTCAACCACATTTAACGGA
GTTGAAAAAAAGAACGGTCGAATATACTTCTCGCCTTTCCCAACAGACAA
GCCCTCTTCTTCAGAGCATGGAAAAGGGTTACCGAAATCTAGTCGTCAAG
ATCCATGACTACAGATATGCCCAGGAGTCTGGACATTCGACATCGCTCGA
CAGCGAGTCTACCATTTTGTCAGCAGATGACCAAAACGAAAAAGAGAACT
GCGAGCGCGCGCAAGAGGGAAAGCAAATTATACTGCACGTATACAAAGCT
GAAAAGTCAAGCGATTCGTCGGACGAGTCTTTCAGTATTCATCCATGA
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Coding sequence (CDS) from alignment at tig00000228_pilon:65402..66999-

>Gchil2154.t1 ID=Gchil2154.t1|Name=Gchil2154.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1530bp|location=Sequence derived from alignment at tig00000228_pilon:65402..66999- (Gracilaria chilensis NLEC103_M9 male)
ATGGAACCGCTCGACCGCGTTGTTTTTACCTTTCCAATTTATGGTCTCGA
TCTTCTGCCAGGTGCAGGTATTGTCGTCGCCGGCGGTGGCGGACGTATGA
AGAGCGGTATTCCAAATGTTTGTCAAGTCTTGACCTTCGATGAAAAGAAG
ATTGCTTTGACCCCAACTGCAATGGTGGAGATTTCAGATGCCGCTGTAGC
TCTTTCCACGCATGAAAATGTTATCCATCTTGCCATCGGTCCTGGGGTAA
AGGATTACAGTTTTGTGCATGATAAGTTGGTACCTGTGTCTTCTTTCCAA
CACGATTTGCAGGTATCCACGAGCGTAGAACAAACAGCAATTGCAGCTTC
TGAAGATGCATCAACTCTCATCATAGCCTCCGATGATGGTAGCGTGGTTG
TTCTTCGCTTGGAACGCTTCGAACCCGTTTTCAGTGGTCGAATCCATACG
AATGGAATCAATGATCTTTGCGTCAGTTCTGATGGGTCCTTGGTGGCCAC
TACTGGTCGAGATAAGGCAGCCCATATATGGAGAAGTCGAGACGGAGAAA
TCTTGCAGACTTTGAAACCTGTAATGCCCATCTCGCATCGCACCCACATC
CGAGCAATTCGCTTTTGTTCAATGCAATCCGATATAGTCTTCTCAGCAGA
GAGTAATCCCCGAAAAGGCGCATGGATTGCAGCTTGGCGCAAACCGAGTC
CATCTGAGACTACTCTTTATTCACCTGTGGCCAAAATCAGAGCTTCGAAC
GACGCTTTAACAGCCATGAGCGTCAATACAGACGGATCGCTTGTGGCCAG
CAGTTCTGCTGAGGGTCACGTTTCTCTGTTTTCCTGGAACGGGACTGCAT
TCTCAAGAATGTGGAGCACGGAGACTCGAACTAATTTTTTTAGGACACCA
AAACCGCCGCATATTCTTCCAGTGACAGGAATGCGTTTCTCGGTCTCTGG
GAAGCACGTCTTTGCGGCTTCTGCAGACTACACGGTTTCAGTCTGGCCAA
CTAGGTTGCCAACAAGATGGAGCAGGTGCGTTCGTGTCTTTTTCTGGATC
ACAAGCATCCTAGTGTTGGTGCTTGCGATGTTAATTGTCGAAGATGAGCA
TCTTCACGAGGAGGTTCGCAAGCGGCGAGCCATGGTTGTACCATACATGG
AACCACACTTATCGGAAGTACAGCGGGCTGTGCGGCCGCTTCTGCAGGAG
GGTAACACAGCAATTCAACCACATTTAACGGAGTTGAAAAAAAGAACGGT
CGAATATACTTCTCGCCTTTCCCAACAGACAAGCCCTCTTCTTCAGAGCA
TGGAAAAGGGTTACCGAAATCTAGTCGTCAAGATCCATGACTACAGATAT
GCCCAGGAGTCTGGACATTCGACATCGCTCGACAGCGAGTCTACCATTTT
GTCAGCAGATGACCAAAACGAAAAAGAGAACTGCGAGCGCGCGCAAGAGG
GAAAGCAAATTATACTGCACGTATACAAAGCTGAAAAGTCAAGCGATTCG
TCGGACGAGTCTTTCAGTATTCATCCATGA
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