Gchil2144.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2144.t1
Unique NameGchil2144.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length571
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000228_piloncontigtig00000228_pilon:18796..20508 -
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog81824.XP_001744171.1
PFAMsGlycos_transf_2,Ricin_B_lectin
Max annot lvl33154|Opisthokonta
KEGG koko:K00710
KEGG ReactionR05907
KEGG Pathwayko00512,ko01100,map00512,map01100
KEGG ModuleM00056
Evalue2.24e-136
EggNOG OGsKOG3736@1|root,KOG3736@2759|Eukaryota,38FFX@33154|Opisthokonta
EC2.4.1.41
Descriptionpolypeptide N-acetylgalactosaminyltransferase activity
COG categoryO
CAZyGT27
BRITEko00000,ko00001,ko00002,ko01000,ko01003
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2144Gchil2144Gracilaria chilensis NLEC103_M9 malegenetig00000228_pilon 18796..20508 -


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2144.t1.stop1Gchil2144.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000228_pilon 18796..18798 -


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2144.t1.CDS1Gchil2144.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000228_pilon 18796..20508 -


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2144.t1.exon1Gchil2144.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000228_pilon 18796..20508 -


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2144.t1.start1Gchil2144.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000228_pilon 20506..20508 -


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2144.t1Gchil2144.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000228_pilon 18796..20508 -


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2144.t1 ID=Gchil2144.t1|Name=Gchil2144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=571bp
MITLPAMHVRKGGSRFRSGRRNGASDMEHMHGKRLGELNGMPHWVPTPLN
FSSQTDREKRLAHSNSSFNRMRSNSISLDRPLPDVRPKLCEKQWYYRSMV
ALPTTSVVIVFYNEPLSTLLRSVHSILNRTPRSLLHEIILVDDGSDEGAP
WLLEGADLDQHIALLPKIVLTRLKGRNGLMAARNSGASLASGGTITFLDC
HVEVGPGWAQPLMGRISEGWWKGVDHVVVPSIDNIDADTFAYTKGGIDVL
THTWGLTQTGLSTAFDKNNTEPVRTPIMAGGLLSLSTAYFDKLGFYDPEM
QMWGGEEMEISFRIWLCRGTIEWAPCSRVGHVFRSDKYWKGSLYTIPEGT
IARNRLRAAFWMGEYKPLYEISMAPLPAGMGIGDMGFYEDIKERLQCRPF
RWYLENVNTDLLRSATKLLGPDGVPHFQASGYMRNNASNGCLDHLHEKGD
HALYGVYPCHYLQGSQSAVYTSSKLLLSGEHLMDGCLTRGRDSRLYRKKC
DDSKVKSQTWDLNIAPDGVSVFMGREGNCLTVLNSGLEAGKSPLSLAMRP
CGEPYVANQKWEWKDLNVRI*
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spliced messenger RNA

>Gchil2144.t1 ID=Gchil2144.t1|Name=Gchil2144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1713bp|location=Sequence derived from alignment at tig00000228_pilon:18796..20508- (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGATAACACTCCCAGCAATGCACGTACGAAAAGGCGGCTCGAGGTTTCG
TTCTGGACGCCGAAATGGGGCGAGTGATATGGAGCATATGCATGGAAAGC
GCCTTGGAGAATTGAACGGAATGCCTCATTGGGTTCCTACTCCTTTGAAC
TTTTCCTCACAGACAGACAGAGAAAAGAGGCTTGCCCATTCAAACTCTAG
TTTCAATCGCATGCGTTCCAATTCCATTTCGTTGGACAGACCTCTTCCCG
ATGTTCGTCCAAAATTGTGTGAAAAGCAATGGTATTACAGATCAATGGTC
GCATTGCCGACAACCTCTGTTGTCATTGTGTTCTACAACGAACCACTATC
AACCCTGCTTCGCTCGGTTCACTCTATTCTCAATCGAACCCCACGCTCTT
TATTGCATGAAATAATTCTTGTCGACGATGGTAGTGATGAAGGTGCTCCT
TGGCTGCTTGAAGGTGCTGATCTGGACCAACATATTGCGCTGCTGCCAAA
AATTGTTTTGACTCGCTTGAAGGGGAGAAATGGCCTGATGGCCGCTCGAA
ACAGCGGCGCGAGTCTGGCATCTGGGGGCACAATAACATTTCTTGATTGT
CATGTGGAAGTCGGTCCTGGGTGGGCGCAGCCGTTGATGGGACGGATCTC
AGAGGGGTGGTGGAAAGGTGTAGACCACGTGGTGGTTCCCAGTATTGACA
ATATTGATGCTGATACTTTTGCCTACACAAAGGGTGGTATAGATGTTCTG
ACCCACACATGGGGTCTAACACAAACGGGATTGTCGACTGCCTTCGATAA
AAACAATACCGAGCCTGTCAGGACACCTATTATGGCTGGAGGCTTGTTAT
CACTATCCACTGCATATTTTGATAAGCTAGGGTTCTATGATCCAGAAATG
CAAATGTGGGGGGGAGAGGAGATGGAGATTTCATTCCGAATATGGCTTTG
CAGGGGCACCATCGAATGGGCCCCTTGTTCTCGAGTTGGCCATGTCTTCC
GCTCCGACAAATACTGGAAAGGAAGTCTTTACACAATTCCGGAAGGAACG
ATTGCACGAAACCGGCTGCGTGCTGCTTTCTGGATGGGGGAATATAAGCC
CCTATATGAGATCTCCATGGCTCCACTACCGGCTGGCATGGGAATTGGTG
ACATGGGTTTCTATGAGGACATTAAAGAACGATTGCAATGCCGTCCTTTC
AGGTGGTACTTGGAGAATGTTAATACGGATCTCCTGCGCTCTGCAACGAA
ACTACTAGGTCCTGATGGGGTTCCTCACTTCCAAGCATCAGGATATATGA
GAAATAACGCAAGCAACGGGTGTCTTGATCACCTGCATGAGAAGGGGGAT
CATGCATTATACGGTGTTTACCCCTGCCATTATCTTCAGGGCAGTCAATC
CGCGGTTTACACAAGCTCCAAACTCTTATTATCAGGTGAACACTTGATGG
ATGGGTGTTTAACTCGAGGCCGTGATTCCAGACTTTACCGTAAAAAATGC
GACGATTCGAAAGTGAAAAGTCAGACTTGGGACCTTAATATTGCTCCAGA
CGGCGTGAGTGTGTTTATGGGGCGCGAAGGAAATTGTTTGACTGTTTTAA
ATAGCGGGCTCGAAGCGGGAAAGAGTCCCTTGTCTTTAGCGATGAGGCCA
TGCGGTGAACCGTACGTAGCAAATCAGAAATGGGAATGGAAAGATCTTAA
TGTGAGAATATGA
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protein sequence of Gchil2144.t1

>Gchil2144.t1 ID=Gchil2144.t1|Name=Gchil2144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=571bp
MITLPAMHVRKGGSRFRSGRRNGASDMEHMHGKRLGELNGMPHWVPTPLN
FSSQTDREKRLAHSNSSFNRMRSNSISLDRPLPDVRPKLCEKQWYYRSMV
ALPTTSVVIVFYNEPLSTLLRSVHSILNRTPRSLLHEIILVDDGSDEGAP
WLLEGADLDQHIALLPKIVLTRLKGRNGLMAARNSGASLASGGTITFLDC
HVEVGPGWAQPLMGRISEGWWKGVDHVVVPSIDNIDADTFAYTKGGIDVL
THTWGLTQTGLSTAFDKNNTEPVRTPIMAGGLLSLSTAYFDKLGFYDPEM
QMWGGEEMEISFRIWLCRGTIEWAPCSRVGHVFRSDKYWKGSLYTIPEGT
IARNRLRAAFWMGEYKPLYEISMAPLPAGMGIGDMGFYEDIKERLQCRPF
RWYLENVNTDLLRSATKLLGPDGVPHFQASGYMRNNASNGCLDHLHEKGD
HALYGVYPCHYLQGSQSAVYTSSKLLLSGEHLMDGCLTRGRDSRLYRKKC
DDSKVKSQTWDLNIAPDGVSVFMGREGNCLTVLNSGLEAGKSPLSLAMRP
CGEPYVANQKWEWKDLNVRI*
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mRNA from alignment at tig00000228_pilon:18796..20508-

Legend: polypeptideCDSexonstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2144.t1 ID=Gchil2144.t1|Name=Gchil2144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=1713bp|location=Sequence derived from alignment at tig00000228_pilon:18796..20508- (Gracilaria chilensis NLEC103_M9 male)
ATGATAACACTCCCAGCAATGCACGTACGAAAAGGCGGCTCGAGGTTTCG
TTCTGGACGCCGAAATGGGGCGAGTGATATGGAGCATATGCATGGAAAGC
GCCTTGGAGAATTGAACGGAATGCCTCATTGGGTTCCTACTCCTTTGAAC
TTTTCCTCACAGACAGACAGAGAAAAGAGGCTTGCCCATTCAAACTCTAG
TTTCAATCGCATGCGTTCCAATTCCATTTCGTTGGACAGACCTCTTCCCG
ATGTTCGTCCAAAATTGTGTGAAAAGCAATGGTATTACAGATCAATGGTC
GCATTGCCGACAACCTCTGTTGTCATTGTGTTCTACAACGAACCACTATC
AACCCTGCTTCGCTCGGTTCACTCTATTCTCAATCGAACCCCACGCTCTT
TATTGCATGAAATAATTCTTGTCGACGATGGTAGTGATGAAGGTGCTCCT
TGGCTGCTTGAAGGTGCTGATCTGGACCAACATATTGCGCTGCTGCCAAA
AATTGTTTTGACTCGCTTGAAGGGGAGAAATGGCCTGATGGCCGCTCGAA
ACAGCGGCGCGAGTCTGGCATCTGGGGGCACAATAACATTTCTTGATTGT
CATGTGGAAGTCGGTCCTGGGTGGGCGCAGCCGTTGATGGGACGGATCTC
AGAGGGGTGGTGGAAAGGTGTAGACCACGTGGTGGTTCCCAGTATTGACA
ATATTGATGCTGATACTTTTGCCTACACAAAGGGTGGTATAGATGTTCTG
ACCCACACATGGGGTCTAACACAAACGGGATTGTCGACTGCCTTCGATAA
AAACAATACCGAGCCTGTCAGGACACCTATTATGGCTGGAGGCTTGTTAT
CACTATCCACTGCATATTTTGATAAGCTAGGGTTCTATGATCCAGAAATG
CAAATGTGGGGGGGAGAGGAGATGGAGATTTCATTCCGAATATGGCTTTG
CAGGGGCACCATCGAATGGGCCCCTTGTTCTCGAGTTGGCCATGTCTTCC
GCTCCGACAAATACTGGAAAGGAAGTCTTTACACAATTCCGGAAGGAACG
ATTGCACGAAACCGGCTGCGTGCTGCTTTCTGGATGGGGGAATATAAGCC
CCTATATGAGATCTCCATGGCTCCACTACCGGCTGGCATGGGAATTGGTG
ACATGGGTTTCTATGAGGACATTAAAGAACGATTGCAATGCCGTCCTTTC
AGGTGGTACTTGGAGAATGTTAATACGGATCTCCTGCGCTCTGCAACGAA
ACTACTAGGTCCTGATGGGGTTCCTCACTTCCAAGCATCAGGATATATGA
GAAATAACGCAAGCAACGGGTGTCTTGATCACCTGCATGAGAAGGGGGAT
CATGCATTATACGGTGTTTACCCCTGCCATTATCTTCAGGGCAGTCAATC
CGCGGTTTACACAAGCTCCAAACTCTTATTATCAGGTGAACACTTGATGG
ATGGGTGTTTAACTCGAGGCCGTGATTCCAGACTTTACCGTAAAAAATGC
GACGATTCGAAAGTGAAAAGTCAGACTTGGGACCTTAATATTGCTCCAGA
CGGCGTGAGTGTGTTTATGGGGCGCGAAGGAAATTGTTTGACTGTTTTAA
ATAGCGGGCTCGAAGCGGGAAAGAGTCCCTTGTCTTTAGCGATGAGGCCA
TGCGGTGAACCGTACGTAGCAAATCAGAAATGGGAATGGAAAGATCTTAA
TGTGAGAATATGA
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Coding sequence (CDS) from alignment at tig00000228_pilon:18796..20508-

>Gchil2144.t1 ID=Gchil2144.t1|Name=Gchil2144.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=1713bp|location=Sequence derived from alignment at tig00000228_pilon:18796..20508- (Gracilaria chilensis NLEC103_M9 male)
ATGATAACACTCCCAGCAATGCACGTACGAAAAGGCGGCTCGAGGTTTCG
TTCTGGACGCCGAAATGGGGCGAGTGATATGGAGCATATGCATGGAAAGC
GCCTTGGAGAATTGAACGGAATGCCTCATTGGGTTCCTACTCCTTTGAAC
TTTTCCTCACAGACAGACAGAGAAAAGAGGCTTGCCCATTCAAACTCTAG
TTTCAATCGCATGCGTTCCAATTCCATTTCGTTGGACAGACCTCTTCCCG
ATGTTCGTCCAAAATTGTGTGAAAAGCAATGGTATTACAGATCAATGGTC
GCATTGCCGACAACCTCTGTTGTCATTGTGTTCTACAACGAACCACTATC
AACCCTGCTTCGCTCGGTTCACTCTATTCTCAATCGAACCCCACGCTCTT
TATTGCATGAAATAATTCTTGTCGACGATGGTAGTGATGAAGGTGCTCCT
TGGCTGCTTGAAGGTGCTGATCTGGACCAACATATTGCGCTGCTGCCAAA
AATTGTTTTGACTCGCTTGAAGGGGAGAAATGGCCTGATGGCCGCTCGAA
ACAGCGGCGCGAGTCTGGCATCTGGGGGCACAATAACATTTCTTGATTGT
CATGTGGAAGTCGGTCCTGGGTGGGCGCAGCCGTTGATGGGACGGATCTC
AGAGGGGTGGTGGAAAGGTGTAGACCACGTGGTGGTTCCCAGTATTGACA
ATATTGATGCTGATACTTTTGCCTACACAAAGGGTGGTATAGATGTTCTG
ACCCACACATGGGGTCTAACACAAACGGGATTGTCGACTGCCTTCGATAA
AAACAATACCGAGCCTGTCAGGACACCTATTATGGCTGGAGGCTTGTTAT
CACTATCCACTGCATATTTTGATAAGCTAGGGTTCTATGATCCAGAAATG
CAAATGTGGGGGGGAGAGGAGATGGAGATTTCATTCCGAATATGGCTTTG
CAGGGGCACCATCGAATGGGCCCCTTGTTCTCGAGTTGGCCATGTCTTCC
GCTCCGACAAATACTGGAAAGGAAGTCTTTACACAATTCCGGAAGGAACG
ATTGCACGAAACCGGCTGCGTGCTGCTTTCTGGATGGGGGAATATAAGCC
CCTATATGAGATCTCCATGGCTCCACTACCGGCTGGCATGGGAATTGGTG
ACATGGGTTTCTATGAGGACATTAAAGAACGATTGCAATGCCGTCCTTTC
AGGTGGTACTTGGAGAATGTTAATACGGATCTCCTGCGCTCTGCAACGAA
ACTACTAGGTCCTGATGGGGTTCCTCACTTCCAAGCATCAGGATATATGA
GAAATAACGCAAGCAACGGGTGTCTTGATCACCTGCATGAGAAGGGGGAT
CATGCATTATACGGTGTTTACCCCTGCCATTATCTTCAGGGCAGTCAATC
CGCGGTTTACACAAGCTCCAAACTCTTATTATCAGGTGAACACTTGATGG
ATGGGTGTTTAACTCGAGGCCGTGATTCCAGACTTTACCGTAAAAAATGC
GACGATTCGAAAGTGAAAAGTCAGACTTGGGACCTTAATATTGCTCCAGA
CGGCGTGAGTGTGTTTATGGGGCGCGAAGGAAATTGTTTGACTGTTTTAA
ATAGCGGGCTCGAAGCGGGAAAGAGTCCCTTGTCTTTAGCGATGAGGCCA
TGCGGTGAACCGTACGTAGCAAATCAGAAATGGGAATGGAAAGATCTTAA
TGTGAGAATATGA
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