Gchil2105.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview


Name	Gchil2105.t1
Unique Name	Gchil2105.t1
Type	mRNA
Organism	Gracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length	677

Alignments

The following features are aligned


Aligned Feature	Feature Type	Alignment Location
tig00000019_pilon	contig	tig00000019_pilon:1099263..1101293 +

Analyses

This mRNA is derived from or has results from the following analyses


Analysis Name	Date Performed
Gracilaria chilensis NLEC103_M9 male OGS1.0	2022-05-09

Relationships

This mRNA is a part of the following gene feature(s):


Feature Name	Unique Name	Species	Type	Position
Gchil2105	Gchil2105	Gracilaria chilensis NLEC103_M9 male	gene	tig00000019_pilon 1099263..1101293 +

The following start_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2105.t1.start1	Gchil2105.t1.start1	Gracilaria chilensis NLEC103_M9 male	start_codon	tig00000019_pilon 1099263..1099265 +

The following CDS feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2105.t1.CDS1	Gchil2105.t1.CDS1	Gracilaria chilensis NLEC103_M9 male	CDS	tig00000019_pilon 1099263..1101293 +

The following exon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2105.t1.exon1	Gchil2105.t1.exon1	Gracilaria chilensis NLEC103_M9 male	exon	tig00000019_pilon 1099263..1101293 +

The following stop_codon feature(s) are a part of this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2105.t1.stop1	Gchil2105.t1.stop1	Gracilaria chilensis NLEC103_M9 male	stop_codon	tig00000019_pilon 1101291..1101293 +

The following polypeptide feature(s) derives from this mRNA:


Feature Name	Unique Name	Species	Type	Position
Gchil2105.t1	Gchil2105.t1	Gracilaria chilensis NLEC103_M9 male	polypeptide	tig00000019_pilon 1099263..1101293 +

Sequences

The following sequences are available for this feature:

mRNA sequence
mRNA - spliced transcript sequence
protein sequence
mRNA from alignment at tig00000019_pilon:1099263..1101293+
coding sequence from alignment at tig00000019_pilon:1099263..1101293+

mRNA sequence

>Gchil2105.t1 ID=Gchil2105.t1|Name=Gchil2105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=677bp
MFSRWASNQALYPFFRASVGSQEHQNPLEKSDKLGDLPLDAIGGGNATPF
WVFSNIWDVKRQCWIIGTKGPGDGASSRANSRMPVRSWNDLPQFRMETTP
AELKRFFAGKVVRTGSEDEFTSATEAFARDCFVWSLAHDISKSECDIIPS
CWAATPVKTVVLNLSNQRKLNMSESVTEQILVLTELKQGDRIEVKSPRFL
VLNDVGYNKEVDEEGVIWQEGIDSCYVWRISSDSPFVRASAMNTESPERL
ADRILRGAVSLMNSIKCLLSLGEANEQDYGQMSMWLENEGRWLADMVLNG
SIEVNDGDYEVCVTKNPFDDGKMGKEGVEIEYVFSVAVQNNNVKNLQMSE
KGLKGGSDCRRNKLNKMLREVMQAKRDSNLRKWLSQKTYEYVISSLKEDK
VCYHRSPYRLLELIDAGLVDDHFNLFEKIFNGAIEIMSDEERSADHLGLV
KYDPSDKRVILGKCFKGQKVSWKNETFKLFRNGLSGIAVKRDGKVLRSAK
LGVLAAIHRVVHDTGALEGGLGALKWERADITREPETQIVLNSLLSGRLG
VSGFTWAVAFLRDSGIRLTSDSACYLKPFHAENGGDYTVKQILKSSVLRR
LEAVEFTVDGERCIGLDFDLPDLMLRLHENTNDATIVRRKNCSDVVKGRI
CSRFFVGGAPFPISDKGHLAHQFKEN*

spliced messenger RNA

>Gchil2105.t1 ID=Gchil2105.t1|Name=Gchil2105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00000019_pilon:1099263..1101293+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGTTTTCGCGATGGGCATCAAATCAAGCGTTATATCCATTCTTTCGTGC
TTCCGTTGGGTCGCAGGAACACCAAAACCCTTTGGAAAAGTCTGACAAGC
TCGGCGACTTGCCATTGGATGCCATTGGTGGCGGAAATGCCACACCATTC
TGGGTTTTTTCGAACATATGGGATGTGAAAAGACAATGCTGGATCATTGG
CACTAAGGGTCCCGGCGACGGAGCTTCTTCACGCGCCAACTCGCGCATGC
CCGTTAGGTCCTGGAACGATCTACCTCAATTCAGGATGGAAACAACCCCG
GCCGAACTGAAGAGGTTTTTTGCCGGAAAGGTGGTCAGAACTGGATCAGA
AGATGAGTTCACATCGGCAACAGAGGCGTTTGCTCGCGACTGTTTTGTTT
GGAGTCTTGCTCATGATATAAGCAAAAGTGAATGCGACATAATACCTTCG
TGCTGGGCCGCCACTCCAGTAAAGACGGTGGTTCTAAATTTAAGCAACCA
GCGAAAACTAAACATGAGTGAGTCGGTGACCGAGCAGATCTTGGTCCTAA
CCGAGCTGAAACAGGGAGACAGGATAGAAGTCAAATCACCTCGCTTCCTC
GTCTTGAATGATGTGGGTTACAACAAGGAGGTAGATGAGGAAGGAGTCAT
TTGGCAGGAGGGTATAGATTCCTGTTACGTATGGAGGATAAGCAGTGATT
CTCCATTTGTAAGGGCCTCAGCAATGAACACCGAAAGTCCTGAGAGGCTT
GCAGATAGGATACTAAGAGGAGCAGTCAGTTTAATGAACAGTATCAAATG
TTTGCTAAGTCTTGGAGAAGCAAATGAGCAGGACTACGGGCAAATGTCTA
TGTGGCTAGAAAACGAAGGCCGATGGCTGGCTGACATGGTCTTGAACGGA
AGTATAGAAGTCAATGATGGTGATTATGAAGTGTGTGTCACGAAAAATCC
GTTTGATGATGGAAAGATGGGTAAAGAAGGGGTCGAAATTGAGTATGTCT
tttctgtagcagtgcaaaacaataatgtcaagaatctccagatgtctgaa
aaaggtctgaagggcggcagtgattgtcgcagaaaCAAATTGAACAAAAT
GTTACGAGAAGTAATGCAAGCCAAACGCGACAGCAACTTGCGTAAGTGGT
TGAGCCAGAAAACATACGAATATGTGATTTCAAGCCTTAAAGAAGATAAA
GTGTGTTACCATCGGTCACCGTACAGACTTTTGGAATTGATTGATGCCGG
GCTGGTCGATGATCACTTTAATCTATTTGAGAAGATATTCAACGGAGCCA
TAGAAATCATGAGTGATGAAGAACGATCGGCAGATCATTTGGGCCTAGTC
AAATACGATCCCTCGGACAAAAGAGTGATATTAGGCAAATGTTTTAAAGG
TCAGAAGGTCTCTTGGAAGAACGAGACATTCAAATTGTTCCGAAATGGGC
TGAGTGGTATAGCTGTGAAACGGGATGGGAAAGTCTTAAGGAGTGCCAAA
TTGGGCGTTCTGGCCGCGATCCATAGAGTGGTACATGACACGGGGGCCCT
TGAAGGTGGACTAGGTGCTTTGAAATGGGAACGGGCAGACATAACGAGAG
AACCGGAGACGCAAATCGTTCTTAACAGTCTGCTGTCTGGCAGACTGGGG
GTATCAGGATTCACCTGGGCTGTGGCCTTTCTTCGCGATAGTGGAATAAG
ACTCACATCAGATTCCGCCTGTTATTTGAAGCCGTTCCATGCCGAGAACG
GTGGCGACTACACAGTGAAGCAGATCCTCAAGAGTTCTGTGTTGCGTCGG
CTTGAGGCTGTTGAATTTACGGTGGACGGCGAGAGATGCATAGGACTTGA
TTTCGATTTGCCCGACTTGATGTTGCGTTTGCACGAGAATACTAACGACG
CGACAATTGTACGCAGAAAGAATTGCAGTGATGTTGTCAAAGGAAGAATA
TGTAGCAGATTTTTTGTAGGGGGTGCGCCTTTTCCTATCAGTGACAAGGG
CCACCTGGCTCATCAGTTCAAGGAAAATTGA

protein sequence of Gchil2105.t1

>Gchil2105.t1 ID=Gchil2105.t1|Name=Gchil2105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=677bp
MFSRWASNQALYPFFRASVGSQEHQNPLEKSDKLGDLPLDAIGGGNATPF
WVFSNIWDVKRQCWIIGTKGPGDGASSRANSRMPVRSWNDLPQFRMETTP
AELKRFFAGKVVRTGSEDEFTSATEAFARDCFVWSLAHDISKSECDIIPS
CWAATPVKTVVLNLSNQRKLNMSESVTEQILVLTELKQGDRIEVKSPRFL
VLNDVGYNKEVDEEGVIWQEGIDSCYVWRISSDSPFVRASAMNTESPERL
ADRILRGAVSLMNSIKCLLSLGEANEQDYGQMSMWLENEGRWLADMVLNG
SIEVNDGDYEVCVTKNPFDDGKMGKEGVEIEYVFSVAVQNNNVKNLQMSE
KGLKGGSDCRRNKLNKMLREVMQAKRDSNLRKWLSQKTYEYVISSLKEDK
VCYHRSPYRLLELIDAGLVDDHFNLFEKIFNGAIEIMSDEERSADHLGLV
KYDPSDKRVILGKCFKGQKVSWKNETFKLFRNGLSGIAVKRDGKVLRSAK
LGVLAAIHRVVHDTGALEGGLGALKWERADITREPETQIVLNSLLSGRLG
VSGFTWAVAFLRDSGIRLTSDSACYLKPFHAENGGDYTVKQILKSSVLRR
LEAVEFTVDGERCIGLDFDLPDLMLRLHENTNDATIVRRKNCSDVVKGRI
CSRFFVGGAPFPISDKGHLAHQFKEN*

mRNA from alignment at tig00000019_pilon:1099263..1101293+

Legend: start_codonpolypeptideCDSexonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

>Gchil2105.t1 ID=Gchil2105.t1|Name=Gchil2105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=2031bp|location=Sequence derived from alignment at tig00000019_pilon:1099263..1101293+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTTCGCGATGGGCATCAAATCAAGCGTTATATCCATTCTTTCGTGC
TTCCGTTGGGTCGCAGGAACACCAAAACCCTTTGGAAAAGTCTGACAAGC
TCGGCGACTTGCCATTGGATGCCATTGGTGGCGGAAATGCCACACCATTC
TGGGTTTTTTCGAACATATGGGATGTGAAAAGACAATGCTGGATCATTGG
CACTAAGGGTCCCGGCGACGGAGCTTCTTCACGCGCCAACTCGCGCATGC
CCGTTAGGTCCTGGAACGATCTACCTCAATTCAGGATGGAAACAACCCCG
GCCGAACTGAAGAGGTTTTTTGCCGGAAAGGTGGTCAGAACTGGATCAGA
AGATGAGTTCACATCGGCAACAGAGGCGTTTGCTCGCGACTGTTTTGTTT
GGAGTCTTGCTCATGATATAAGCAAAAGTGAATGCGACATAATACCTTCG
TGCTGGGCCGCCACTCCAGTAAAGACGGTGGTTCTAAATTTAAGCAACCA
GCGAAAACTAAACATGAGTGAGTCGGTGACCGAGCAGATCTTGGTCCTAA
CCGAGCTGAAACAGGGAGACAGGATAGAAGTCAAATCACCTCGCTTCCTC
GTCTTGAATGATGTGGGTTACAACAAGGAGGTAGATGAGGAAGGAGTCAT
TTGGCAGGAGGGTATAGATTCCTGTTACGTATGGAGGATAAGCAGTGATT
CTCCATTTGTAAGGGCCTCAGCAATGAACACCGAAAGTCCTGAGAGGCTT
GCAGATAGGATACTAAGAGGAGCAGTCAGTTTAATGAACAGTATCAAATG
TTTGCTAAGTCTTGGAGAAGCAAATGAGCAGGACTACGGGCAAATGTCTA
TGTGGCTAGAAAACGAAGGCCGATGGCTGGCTGACATGGTCTTGAACGGA
AGTATAGAAGTCAATGATGGTGATTATGAAGTGTGTGTCACGAAAAATCC
GTTTGATGATGGAAAGATGGGTAAAGAAGGGGTCGAAATTGAGTATGTCT
tttctgtagcagtgcaaaacaataatgtcaagaatctccagatgtctgaa
aaaggtctgaagggcggcagtgattgtcgcagaaaCAAATTGAACAAAAT
GTTACGAGAAGTAATGCAAGCCAAACGCGACAGCAACTTGCGTAAGTGGT
TGAGCCAGAAAACATACGAATATGTGATTTCAAGCCTTAAAGAAGATAAA
GTGTGTTACCATCGGTCACCGTACAGACTTTTGGAATTGATTGATGCCGG
GCTGGTCGATGATCACTTTAATCTATTTGAGAAGATATTCAACGGAGCCA
TAGAAATCATGAGTGATGAAGAACGATCGGCAGATCATTTGGGCCTAGTC
AAATACGATCCCTCGGACAAAAGAGTGATATTAGGCAAATGTTTTAAAGG
TCAGAAGGTCTCTTGGAAGAACGAGACATTCAAATTGTTCCGAAATGGGC
TGAGTGGTATAGCTGTGAAACGGGATGGGAAAGTCTTAAGGAGTGCCAAA
TTGGGCGTTCTGGCCGCGATCCATAGAGTGGTACATGACACGGGGGCCCT
TGAAGGTGGACTAGGTGCTTTGAAATGGGAACGGGCAGACATAACGAGAG
AACCGGAGACGCAAATCGTTCTTAACAGTCTGCTGTCTGGCAGACTGGGG
GTATCAGGATTCACCTGGGCTGTGGCCTTTCTTCGCGATAGTGGAATAAG
ACTCACATCAGATTCCGCCTGTTATTTGAAGCCGTTCCATGCCGAGAACG
GTGGCGACTACACAGTGAAGCAGATCCTCAAGAGTTCTGTGTTGCGTCGG
CTTGAGGCTGTTGAATTTACGGTGGACGGCGAGAGATGCATAGGACTTGA
TTTCGATTTGCCCGACTTGATGTTGCGTTTGCACGAGAATACTAACGACG
CGACAATTGTACGCAGAAAGAATTGCAGTGATGTTGTCAAAGGAAGAATA
TGTAGCAGATTTTTTGTAGGGGGTGCGCCTTTTCCTATCAGTGACAAGGG
CCACCTGGCTCATCAGTTCAAGGAAAATTGA

Coding sequence (CDS) from alignment at tig00000019_pilon:1099263..1101293+

>Gchil2105.t1 ID=Gchil2105.t1|Name=Gchil2105.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=2031bp|location=Sequence derived from alignment at tig00000019_pilon:1099263..1101293+ (Gracilaria chilensis NLEC103_M9 male)
ATGTTTTCGCGATGGGCATCAAATCAAGCGTTATATCCATTCTTTCGTGC
TTCCGTTGGGTCGCAGGAACACCAAAACCCTTTGGAAAAGTCTGACAAGC
TCGGCGACTTGCCATTGGATGCCATTGGTGGCGGAAATGCCACACCATTC
TGGGTTTTTTCGAACATATGGGATGTGAAAAGACAATGCTGGATCATTGG
CACTAAGGGTCCCGGCGACGGAGCTTCTTCACGCGCCAACTCGCGCATGC
CCGTTAGGTCCTGGAACGATCTACCTCAATTCAGGATGGAAACAACCCCG
GCCGAACTGAAGAGGTTTTTTGCCGGAAAGGTGGTCAGAACTGGATCAGA
AGATGAGTTCACATCGGCAACAGAGGCGTTTGCTCGCGACTGTTTTGTTT
GGAGTCTTGCTCATGATATAAGCAAAAGTGAATGCGACATAATACCTTCG
TGCTGGGCCGCCACTCCAGTAAAGACGGTGGTTCTAAATTTAAGCAACCA
GCGAAAACTAAACATGAGTGAGTCGGTGACCGAGCAGATCTTGGTCCTAA
CCGAGCTGAAACAGGGAGACAGGATAGAAGTCAAATCACCTCGCTTCCTC
GTCTTGAATGATGTGGGTTACAACAAGGAGGTAGATGAGGAAGGAGTCAT
TTGGCAGGAGGGTATAGATTCCTGTTACGTATGGAGGATAAGCAGTGATT
CTCCATTTGTAAGGGCCTCAGCAATGAACACCGAAAGTCCTGAGAGGCTT
GCAGATAGGATACTAAGAGGAGCAGTCAGTTTAATGAACAGTATCAAATG
TTTGCTAAGTCTTGGAGAAGCAAATGAGCAGGACTACGGGCAAATGTCTA
TGTGGCTAGAAAACGAAGGCCGATGGCTGGCTGACATGGTCTTGAACGGA
AGTATAGAAGTCAATGATGGTGATTATGAAGTGTGTGTCACGAAAAATCC
GTTTGATGATGGAAAGATGGGTAAAGAAGGGGTCGAAATTGAGTATGTCT
tttctgtagcagtgcaaaacaataatgtcaagaatctccagatgtctgaa
aaaggtctgaagggcggcagtgattgtcgcagaaaCAAATTGAACAAAAT
GTTACGAGAAGTAATGCAAGCCAAACGCGACAGCAACTTGCGTAAGTGGT
TGAGCCAGAAAACATACGAATATGTGATTTCAAGCCTTAAAGAAGATAAA
GTGTGTTACCATCGGTCACCGTACAGACTTTTGGAATTGATTGATGCCGG
GCTGGTCGATGATCACTTTAATCTATTTGAGAAGATATTCAACGGAGCCA
TAGAAATCATGAGTGATGAAGAACGATCGGCAGATCATTTGGGCCTAGTC
AAATACGATCCCTCGGACAAAAGAGTGATATTAGGCAAATGTTTTAAAGG
TCAGAAGGTCTCTTGGAAGAACGAGACATTCAAATTGTTCCGAAATGGGC
TGAGTGGTATAGCTGTGAAACGGGATGGGAAAGTCTTAAGGAGTGCCAAA
TTGGGCGTTCTGGCCGCGATCCATAGAGTGGTACATGACACGGGGGCCCT
TGAAGGTGGACTAGGTGCTTTGAAATGGGAACGGGCAGACATAACGAGAG
AACCGGAGACGCAAATCGTTCTTAACAGTCTGCTGTCTGGCAGACTGGGG
GTATCAGGATTCACCTGGGCTGTGGCCTTTCTTCGCGATAGTGGAATAAG
ACTCACATCAGATTCCGCCTGTTATTTGAAGCCGTTCCATGCCGAGAACG
GTGGCGACTACACAGTGAAGCAGATCCTCAAGAGTTCTGTGTTGCGTCGG
CTTGAGGCTGTTGAATTTACGGTGGACGGCGAGAGATGCATAGGACTTGA
TTTCGATTTGCCCGACTTGATGTTGCGTTTGCACGAGAATACTAACGACG
CGACAATTGTACGCAGAAAGAATTGCAGTGATGTTGTCAAAGGAAGAATA
TGTAGCAGATTTTTTGTAGGGGGTGCGCCTTTTCCTATCAGTGACAAGGG
CCACCTGGCTCATCAGTTCAAGGAAAATTGA