Gchil2103.t1 (mRNA) Gracilaria chilensis NLEC103_M9 male

You are viewing an mRNA, more information available on the corresponding polypeptide page

Overview
NameGchil2103.t1
Unique NameGchil2103.t1
TypemRNA
OrganismGracilaria chilensis NLEC103_M9 male (Gracilaria chilensis NLEC103_M9 male)
Sequence length180
Alignments
The following features are aligned
Aligned FeatureFeature TypeAlignment Location
tig00000019_piloncontigtig00000019_pilon:1095024..1095563 +
Analyses
This mRNA is derived from or has results from the following analyses
Analysis NameDate Performed
Gracilaria chilensis NLEC103_M9 male OGS1.02022-05-09
Properties
Property NameValue
Seed ortholog2880.D7FTR2
PFAMsGST_N_3,Glutaredoxin2_C
Max annot lvl2759|Eukaryota
Evalue9.61e-32
EggNOG OGsCOG2999@1|root,2RYF1@2759|Eukaryota
DescriptionGlutaredoxin 2, C terminal domain
COG categoryO
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesTypePosition
Gchil2103Gchil2103Gracilaria chilensis NLEC103_M9 malegenetig00000019_pilon 1095024..1095563 +


The following start_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2103.t1.start1Gchil2103.t1.start1Gracilaria chilensis NLEC103_M9 malestart_codontig00000019_pilon 1095024..1095026 +


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2103.t1.CDS1Gchil2103.t1.CDS1Gracilaria chilensis NLEC103_M9 maleCDStig00000019_pilon 1095024..1095563 +


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2103.t1.exon1Gchil2103.t1.exon1Gracilaria chilensis NLEC103_M9 maleexontig00000019_pilon 1095024..1095563 +


The following stop_codon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2103.t1.stop1Gchil2103.t1.stop1Gracilaria chilensis NLEC103_M9 malestop_codontig00000019_pilon 1095561..1095563 +


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesTypePosition
Gchil2103.t1Gchil2103.t1Gracilaria chilensis NLEC103_M9 malepolypeptidetig00000019_pilon 1095024..1095563 +


Sequences
The following sequences are available for this feature:

mRNA sequence

>Gchil2103.t1 ID=Gchil2103.t1|Name=Gchil2103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=180bp
MTTPPALPVRVVPTSLPNLLVYDHCPFCVRVRHLLGLKKVKYNLMWLASD
DERTPTSLVGRKIVPIFQPQGAHGPSQDESMDICAAIDSDARYRPPGLLK
RASGRIDLSQWIDDLDVTMRRLPLVRFVRAPLLKVVFADGRESFMTKYPL
SDPDGYQANMARSGSTLPRFSIEFMSLQT*
back to top

spliced messenger RNA

>Gchil2103.t1 ID=Gchil2103.t1|Name=Gchil2103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000019_pilon:1095024..1095563+ (Gracilaria chilensis NLEC103_M9 male)|Notes=Excludes all bases but those of type(s): exon.  
ATGACCACGCCGCCTGCGCTGCCCGTGCGCGTCGTGCCCACCTCGCTTCC
CAACCTGCTGGTGTACGATCACTGTCCATTTTGTGTGCGAGTGCGCCACC
TCCTTGGGCTCAAGAAAGTCAAGTACAACCTGATGTGGCTGGCCAGCGAC
GATGAGCGCACCCCCACCTCGCTGGTAGGCCGCAAGATCGTGCCTATCTT
CCAGCCACAAGGCGCCCACGGCCCCTCCCAAGACGAGAGCATGGACATCT
GCGCCGCCATCGATTCGGACGCTCGCTACAGACCGCCAGGCTTGCTCAAG
CGCGCATCCGGCCGCATAGATCTCTCTCAGTGGATCGACGACCTTGACGT
CACCATGCGTCGCCTCCCCCTTGTGCGCTTCGTGCGAGCGCCGCTTCTAA
AGGTAGTGTTTGCAGACGGCCGCGAGTCGTTCATGACCAAGTACCCGCTA
AGCGACCCGGATGGCTATCAAGCCAATATGGCAAGGTCCGGCAGTACATT
GCCGAGATTCAGCATAGAATTCATGAGCTTGCAGACATGA
back to top

protein sequence of Gchil2103.t1

>Gchil2103.t1 ID=Gchil2103.t1|Name=Gchil2103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=polypeptide|length=180bp
MTTPPALPVRVVPTSLPNLLVYDHCPFCVRVRHLLGLKKVKYNLMWLASD
DERTPTSLVGRKIVPIFQPQGAHGPSQDESMDICAAIDSDARYRPPGLLK
RASGRIDLSQWIDDLDVTMRRLPLVRFVRAPLLKVVFADGRESFMTKYPL
SDPDGYQANMARSGSTLPRFSIEFMSLQT*
back to top

mRNA from alignment at tig00000019_pilon:1095024..1095563+

Legend: start_codonpolypeptideCDSexonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
>Gchil2103.t1 ID=Gchil2103.t1|Name=Gchil2103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=mRNA|length=540bp|location=Sequence derived from alignment at tig00000019_pilon:1095024..1095563+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCACGCCGCCTGCGCTGCCCGTGCGCGTCGTGCCCACCTCGCTTCC
CAACCTGCTGGTGTACGATCACTGTCCATTTTGTGTGCGAGTGCGCCACC
TCCTTGGGCTCAAGAAAGTCAAGTACAACCTGATGTGGCTGGCCAGCGAC
GATGAGCGCACCCCCACCTCGCTGGTAGGCCGCAAGATCGTGCCTATCTT
CCAGCCACAAGGCGCCCACGGCCCCTCCCAAGACGAGAGCATGGACATCT
GCGCCGCCATCGATTCGGACGCTCGCTACAGACCGCCAGGCTTGCTCAAG
CGCGCATCCGGCCGCATAGATCTCTCTCAGTGGATCGACGACCTTGACGT
CACCATGCGTCGCCTCCCCCTTGTGCGCTTCGTGCGAGCGCCGCTTCTAA
AGGTAGTGTTTGCAGACGGCCGCGAGTCGTTCATGACCAAGTACCCGCTA
AGCGACCCGGATGGCTATCAAGCCAATATGGCAAGGTCCGGCAGTACATT
GCCGAGATTCAGCATAGAATTCATGAGCTTGCAGACATGA
back to top

Coding sequence (CDS) from alignment at tig00000019_pilon:1095024..1095563+

>Gchil2103.t1 ID=Gchil2103.t1|Name=Gchil2103.t1|organism=Gracilaria chilensis NLEC103_M9 male|type=CDS|length=540bp|location=Sequence derived from alignment at tig00000019_pilon:1095024..1095563+ (Gracilaria chilensis NLEC103_M9 male)
ATGACCACGCCGCCTGCGCTGCCCGTGCGCGTCGTGCCCACCTCGCTTCC
CAACCTGCTGGTGTACGATCACTGTCCATTTTGTGTGCGAGTGCGCCACC
TCCTTGGGCTCAAGAAAGTCAAGTACAACCTGATGTGGCTGGCCAGCGAC
GATGAGCGCACCCCCACCTCGCTGGTAGGCCGCAAGATCGTGCCTATCTT
CCAGCCACAAGGCGCCCACGGCCCCTCCCAAGACGAGAGCATGGACATCT
GCGCCGCCATCGATTCGGACGCTCGCTACAGACCGCCAGGCTTGCTCAAG
CGCGCATCCGGCCGCATAGATCTCTCTCAGTGGATCGACGACCTTGACGT
CACCATGCGTCGCCTCCCCCTTGTGCGCTTCGTGCGAGCGCCGCTTCTAA
AGGTAGTGTTTGCAGACGGCCGCGAGTCGTTCATGACCAAGTACCCGCTA
AGCGACCCGGATGGCTATCAAGCCAATATGGCAAGGTCCGGCAGTACATT
GCCGAGATTCAGCATAGAATTCATGAGCTTGCAGACATGA
back to top